Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Model size | 260 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Cds size | 195 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681464258.7461267-CDS-Ecto-sp13_S_contig9996:3060..3138 | 1681464258.7461267-CDS-Ecto-sp13_S_contig9996:3060..3138 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9996 3061..3138 + |
| 1681464258.7587574-CDS-Ecto-sp13_S_contig9996:4663..4763 | 1681464258.7587574-CDS-Ecto-sp13_S_contig9996:4663..4763 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9996 4664..4763 + |
| 1681464258.7702458-CDS-Ecto-sp13_S_contig9996:5170..5187 | 1681464258.7702458-CDS-Ecto-sp13_S_contig9996:5170..5187 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9996 5171..5187 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681464258.7813373-UTR-Ecto-sp13_S_contig9996:5187..5250 | 1681464258.7813373-UTR-Ecto-sp13_S_contig9996:5187..5250 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig9996 5188..5250 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9996.21641.1 >prot_Ecto-sp13_S_contig9996.21641.1 ID=prot_Ecto-sp13_S_contig9996.21641.1|Name=mRNA_Ecto-sp13_S_contig9996.21641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
PAKGEGLNSWRERIRLEQGTKQQTLKETNQALCPNTWLQHQPTWLPFSCI
GRVDEGHYASPPAV* back to topmRNA from alignment at Ecto-sp13_S_contig9996:3061..5250+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig9996.21641.1 ID=mRNA_Ecto-sp13_S_contig9996.21641.1|Name=mRNA_Ecto-sp13_S_contig9996.21641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2190bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9996:3061..5250+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGCGAAGGGCGAAGGACTAAACTCGTGGAGGGAACGAATAAGGCTCGA
ACAGGGCACGAAACAGCAGACGCTCAAGGTAAACGAAATGGAGGAGGACG
CTCCCGTACCTCCCCCTTCTACCCCTCCGGCCTTGCTACCACAGCAGCAG
GTGGAAGGCGAGGATACGGTCTGTCCTGTGCATGACACGATCCCCTCAGG
ATGCAGCAGCAATGGCTAGAGAAGCGTTGCGATGAGAAGTTGATGTCAAA
ATGGAATGTGGGAAGTCGACTAATGTAATGGCCAATCACGCAATGCTGCC
CGTGTGCGCGCTGAGGCACACCGAGGACATGGACGTCCAGCGGAATAAGC
TAGCCTTGCCTCCGTTTTCGAAGGCGTACTACACCAACGTCAGAAGTGTT
TTATGCAAGGCCTACCTCGTAGATTCCCAGAGCATCCTTTTCCTCTTTGT
CTCTCTGTACTGCTGTGTGTTGCACAAGGCCAGTGTGTACTCCTTCGGTG
CCCCTGTTTACAAACGTGTCACCACACGGACCGCACGAACACATGCACTA
TCCTTATTTTTTGTCTTGAAAAAGGTATCGAAGCTCTCCCAGAAGAAGTA
TGCTCTCGTTATTGAAGAAAACACTTCCAATGACTAGCACACGTGGGAAA
GGAAAACAATATACAAATGTAGAAAAAGGACACTCCCGCGACCTTCCTCC
TGCCTAGGCCTATTCCCTACTCCACCGGTTGGTGAGAAGTCAGGCCATCG
TGGTCGAGGTTGGGTGGTACTGTACTGTACTGTACTGTACTGTACCATGG
GTGGTACTGTTTTCCTGCGACCTCCGGCTGACGTGCATCTAACGGCGTGT
AGATTGCCGCCAGTATACATTGAGCACCAGCCACAATGCAAGGGGGGCAG
AAACGAACACGAGCACAAAGCTGCAGCCAAGGTGGAACCTTGCGGTTTGT
TTCTTTTGCTCCTGTACCGTTTCTGTCTTTTATATCCGGATAGGAGCAGC
TAAGCCCTCGCCATGACGCCTTCCCAGGTCATTTTCGGAAGCATGTTCTG
GTTTTTGCCGCACTGAGAGTGACATATTTTCGTTGGTCAGCCACTTTTTG
CGATACCACTATCAATAAAGACATCGAAAAGCACCAACAACAGCTACCCC
GCAAGAATAAGCCACAAACGGTGCCTAGAAATGTGGCGGAGGTTTGGTTT
GGATCCAGAGTTGAGGAGTTTTATGTTGCAGTGGCACCTTTCCATGTGAG
AGCCCCATTAATAGATCTGAACGTGCCGACGCACCCGCCGCTGGTCCATG
ATGTCCTTTTCCGGCTTAGCGCCTGAGATAGAAGTTAACGTTGTGTGAAA
CGAAATGCCGCCTTTGAACTCTCCGATTGGATTTACGTATAATCCGATAC
CGCCCTTTTCCGCACCCGCCTAATTATTGTCCTAGGAGGGTGGCGAGAAT
AGAGGCACGAAATTGGCCGTATGGCCGAGTGGTCAGAGAAACATGGTTTA
CTTGCTTGTGCCGCAAGTAGGTCGCGCGCACACACTTCGGGGAAATCTGT
GGGTTGAGTTGTCCTTCTTCATGACACACAAACTACCGATGTATTCATTG
CAGGAGACAAACCAAGCTCTATGCCCAAATACTTGGCTGCAGCACCAGCC
GACTTGGCTGCCATTTTCGTGTATCGGACGCGTCGATGAGGGACATTATG
CATGTGGGTTTACTCTCATGCGCTGCCTAAACTTCATCTGCTGCTGTCGG
TGCAGAAGCTTGGGTCAACTGTTTATCGTATGGTGTACACACGAGCCTGC
TGTAGGTTAACGTAGCGCACTGTACATGTTACCGCATCAACAAGAGAAAC
CCAATGTTCAAAGGTCGCACGCGCTTACTGAATGGATTTGATTGTCGTTT
CGAACACCCCGGAGCCATGTGTGTGTCCGTATTGAATTTCACACATTCCG
TTGCTTGGAAACTCTCAGACATTTGAACACCTTGGAATACCTCCTACGAC
GTGCTGCCAGTTTATTGCATTTTAGCTTGTACTTTTCTGCGTTTCCATCC
AGTCGTCACGTCTGGCACCTACATGTATGCATATCCCGCAATCTCTGCCT
CGCTTTGCAGCCCCCCCCGCAGTTTGAAATGGCGTCTGAGGATCGTGCGG
CACTGGTGGCCCTGTTTCGCTCCACCGGCGGTATTCGTTG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig9996:3061..5250+ >mRNA_Ecto-sp13_S_contig9996.21641.1 ID=mRNA_Ecto-sp13_S_contig9996.21641.1|Name=mRNA_Ecto-sp13_S_contig9996.21641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9996:3061..5250+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGCGAAGGGCGAAGGACTAAACTCGTGGAGGGAACGAATAAGGCTCGA
ACAGGGCACGAAACAGCAGACGCTCAAGGAGACAAACCAAGCTCTATGCC
CAAATACTTGGCTGCAGCACCAGCCGACTTGGCTGCCATTTTCGTGTATC
GGACGCGTCGATGAGGGACATTATGCATCCCCCCCCGCAGTTTGA back to top
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