mRNA_Ecto-sp13_S_contig999.21636.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: D7FX72_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX72_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 2.420e-13 Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 Query: 1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 120 S IDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS Sbjct: 108 SPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 147
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: A0A6H5L1H9_9PHAE (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H9_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 4.890e-13 Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 Query: 1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 120 S IDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS Sbjct: 212 SPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 251
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: A0A2Z7CY40_9LAMI (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CY40_9LAMI) HSP 1 Score: 50.8 bits (120), Expect = 1.880e-6 Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 1 Query: 1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 120 S +D+IPE L+G+ GLLDDL++V+ +LH+ S+YR VLLS Sbjct: 141 SPVDIIPEGLLGVIGLLDDLIIVLICVLHVASLYRAVLLS 180
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: A0A830B9J8_9LAMI (RING-type E3 ubiquitin transferase n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830B9J8_9LAMI) HSP 1 Score: 49.3 bits (116), Expect = 6.780e-6 Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1 Query: 1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 120 S +D+IPE LVG+ GLLDDL++V LH+ ++YR VLLS Sbjct: 136 SPVDIIPEGLVGVFGLLDDLIIVFICFLHVAALYRAVLLS 175
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: A0A7N0UW41_KALFE (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UW41_KALFE) HSP 1 Score: 48.9 bits (115), Expect = 1.010e-5 Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1 Query: 1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLL 117 S +D+IPE L G+ GLLDDL+VV+ + LH+ +VYR+VLL Sbjct: 137 SPVDIIPEGLFGVVGLLDDLIVVLTVFLHVAAVYRSVLL 175
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: A0A6A5PAC4_LUPAL (RING-type E3 ubiquitin transferase n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5PAC4_LUPAL) HSP 1 Score: 46.6 bits (109), Expect = 1.050e-5 Identity = 21/38 (55.26%), Postives = 31/38 (81.58%), Query Frame = 1 Query: 1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVL 114 S ID+IPE ++GI GLLDDL++V+ LH+ ++YR+VL Sbjct: 22 SPIDIIPEGILGIVGLLDDLLIVLICFLHVATLYRSVL 59
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: UPI001CC346A4 (E3 ubiquitin-protein ligase RNF170-like isoform X1 n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC346A4) HSP 1 Score: 48.5 bits (114), Expect = 1.390e-5 Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1 Query: 1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 120 S ID+IPE +VG+ G+LDDLV+ + LH+ ++YRT LLS Sbjct: 141 SPIDIIPEGVVGLIGILDDLVIALIFFLHIAAMYRTALLS 180
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: A0A1R3I8E8_9ROSI (RING-type E3 ubiquitin transferase n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3I8E8_9ROSI) HSP 1 Score: 45.8 bits (107), Expect = 1.620e-5 Identity = 20/38 (52.63%), Postives = 31/38 (81.58%), Query Frame = 1 Query: 1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVL 114 S ID+IPE+++GI GLLDDL++ + LH+ ++YR+VL Sbjct: 10 SPIDIIPEAILGIVGLLDDLLIALVCFLHVAAIYRSVL 47
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: A0A8J5LDX6_ZINOF (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LDX6_ZINOF) HSP 1 Score: 48.1 bits (113), Expect = 1.700e-5 Identity = 20/39 (51.28%), Postives = 33/39 (84.62%), Query Frame = 1 Query: 1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLL 117 S +D+IPE + G+ GLLDDL++++ +LLH+ ++YR+VLL Sbjct: 128 SPVDIIPEGIFGLVGLLDDLIILLIVLLHVATIYRSVLL 166
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: UPI0020095D38 (E3 ubiquitin-protein ligase RNF170-like n=3 Tax=Salvia TaxID=21880 RepID=UPI0020095D38) HSP 1 Score: 48.1 bits (113), Expect = 1.860e-5 Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 1 Query: 1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 120 S +D+IPE+L+GI GLLDDL+VV L++ ++YRTVL+S Sbjct: 137 SPVDIIPEALLGIIGLLDDLIVVFMCFLYVAALYRTVLVS 176 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig999.21636.1 >prot_Ecto-sp13_S_contig999.21636.1 ID=prot_Ecto-sp13_S_contig999.21636.1|Name=mRNA_Ecto-sp13_S_contig999.21636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=40bp SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLSback to top mRNA from alignment at Ecto-sp13_S_contig999:19817..19936- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig999.21636.1 ID=mRNA_Ecto-sp13_S_contig999.21636.1|Name=mRNA_Ecto-sp13_S_contig999.21636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig999:19817..19936- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig999:19817..19936- >mRNA_Ecto-sp13_S_contig999.21636.1 ID=mRNA_Ecto-sp13_S_contig999.21636.1|Name=mRNA_Ecto-sp13_S_contig999.21636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig999:19817..19936- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |