mRNA_Ecto-sp13_S_contig9972.21621.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: A0A6H5J947_9PHAE (PAP2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J947_9PHAE) HSP 1 Score: 694 bits (1792), Expect = 7.550e-243 Identity = 339/355 (95.49%), Postives = 342/355 (96.34%), Query Frame = 1 Query: 1 QYVCPHVGNADPGRRVGKTALPLWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRPPLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSAYDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLPRRHPPRPASGAPSPNGIGANGSINGGTGYGHQRHRPHSNAYVYHNLHQQPHGNGTGINGGSGSVRPHRQHKRKLTAEAAEDLMPSGPS 1065 QYVCPHVGNADP RRVGKTALPLWLLWVLGFQHIRRHIL MLQPPLARVMLNGEIFISVSVLMTICANFSTMVH PR PLFDVGFYL+PAQGVDSPWRPLSDILTLALPGLAF RTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALS YDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFR+APRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLPRRHPPRPASGAPSPNG+G GSINGG GYGHQRHRPHSNAY Y NLHQQPHGNGTGINGGSGSVRPHRQHKRKLTAEAAEDLM GPS Sbjct: 272 QYVCPHVGNADPDRRVGKTALPLWLLWVLGFQHIRRHILGMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHQPRLPLFDVGFYLVPAQGVDSPWRPLSDILTLALPGLAFLRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSEYDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRRAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLPRRHPPRPASGAPSPNGVGVIGSINGGMGYGHQRHRPHSNAYGYQNLHQQPHGNGTGINGGSGSVRPHRQHKRKLTAEAAEDLMLPGPS 626
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: D8LG44_ECTSI (PAP2_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG44_ECTSI) HSP 1 Score: 343 bits (881), Expect = 6.860e-115 Identity = 166/172 (96.51%), Postives = 168/172 (97.67%), Query Frame = 1 Query: 271 QGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSAYDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQ 786 QGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALS YD PRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFR+APRLVYA VK+ GFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQ Sbjct: 30 QGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSGYDRPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRRAPRLVYALVKSTGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQ 201
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: D7FRP1_ECTSI (PAP2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP1_ECTSI) HSP 1 Score: 280 bits (716), Expect = 3.650e-87 Identity = 131/246 (53.25%), Postives = 171/246 (69.51%), Query Frame = 1 Query: 55 TALPLWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRPPLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSAYDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDG 792 ALPLW LWV G RR I + P + + N E+ V + MT+ NF+T VH P PLFD+GF +IP Q +DSPWRP+SD LT LPG+A R+LF DR+ R + WFRL+S+ Y++RCL + LTSLPGPAPHC + Y+PP WH++ATR+G ++GDF +CGDLLFSGH A+TT++ML+ KS+R Y KA G +YLLTM T IAGRKHYTVD+ L +++A LTFFRF++G Sbjct: 121 VALPLWGLWVAGLFCYRRMIYKRIPPDMVALFRNAEVLALVVLFMTVTVNFATYVHTPAEPLFDIGFLVIPEQTLDSPWRPVSDTLTALLPGIALLRSLFMDRKQRVTLVTSWFRLVSIVYMLRCLTIGLTSLPGPAPHCRDKALYNPPVSWHEIATRMGVMVGDFSSCGDLLFSGHAAFTTLTMLIFVKSWRG--HATYRVWKALGVVYLLTMCTLAIAGRKHYTVDITLGILVASLTFFRFENG 364
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: A0A7S3K1H4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1H4_9STRA) HSP 1 Score: 214 bits (544), Expect = 1.200e-60 Identity = 124/264 (46.97%), Postives = 160/264 (60.61%), Query Frame = 1 Query: 40 RRVGKT------ALPLWLLWVLGFQHIRRHILA--MLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRPPLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAF-FRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCE----ALSAYDPPRGWHDVATRLGP-LMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQD 789 RRV K A W W+ + R +L ++ P+ +V + E+F + +LMTIC NF++ +H P LFD+GFYLIP + + PLSD LT ALP LAF + L DRR RCR I DWFR+M+V YL RC+ T+TSLPGPAPHC A AY PP WH++AT L L G TCGDLLFSGH A TT++ LLL + R+ + V KA G Y+L + +A RKHYTVD+AL +I LT+FRF+D Sbjct: 150 RRVAKNTASHAAAFAAWTGWLAFILILERPLLKRRLMPAPIFQVCRHAELFATAGLLMTICTNFASYLHSPGHRLFDLGFYLIPQ--ISKKFYPLSDALTGALPVLAFSYLCLVLDRRRRCRAITDWFRMMTVVYLFRCITSTMTSLPGPAPHCAPSAYAKGAYLPPSTWHEIATSLSTGLTGG--TCGDLLFSGHAAMTTITTLLLVRQQRRHGQKVERVAKAIGCTYILIVCIFALASRKHYTVDLALGTLIGSLTYFRFRD 409
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: A0A5D6Y3E4_9STRA (PAP2_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3E4_9STRA) HSP 1 Score: 212 bits (540), Expect = 1.230e-60 Identity = 121/271 (44.65%), Postives = 163/271 (60.15%), Query Frame = 1 Query: 31 DPGRRVGKTALPLWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRP-PLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSA-YDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKS----FRQAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLPR-RHPPRP 822 +P R+ AL W L H+R + A + + + EIFI+VS+ M N + +H P PL D+GF L+P Q +DS WRPLSD+LT +P L +TLF R RCR IA +FR+ SV+Y +R L V+LTSLPGPAPHC SA Y PP+ W D+ TR+GP+ G F +CGDL+FSGH A+T ++LL ++ F + RL + AG +LL +A +AGRKHYTVDV L VV++ L +F F+ LP HP P Sbjct: 88 EPRARLQNGAL--WSALTLALLHVRSAVRARCGADVRALADHLEIFIAVSLAMVFSTNIAFYLHAPAAAPLRDLGFMLVPEQALDSKWRPLSDVLTAVVPVLGLLQTLFMTRANRCRVIATFFRVASVSYALRLLTVSLTSLPGPAPHCRPGSALYAPPQTWIDIVTRVGPMYGQFNSCGDLIFSGHMAYTNSALLLYLRTMDRYFARFSRLRWL----AGTAFLLALALLCVAGRKHYTVDVVLGVVVSSLVYFHFEYSWLPACAHPQHP 352
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: K3X811_GLOUD (PAP2_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X811_GLOUD) HSP 1 Score: 210 bits (534), Expect = 1.570e-59 Identity = 108/247 (43.72%), Postives = 156/247 (63.16%), Query Frame = 1 Query: 67 LWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRP-PLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSA-YDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLP 801 LW ++ + R + A + + + EIFI+VS+ M N + +H P PL D+GF L+PAQ VDSPWRP+SD+LT +P +A +T F R RCR I+ +FR+ +V+Y +R L V+LTSLPGPAPHC S Y PP+ W D+ TR+GP+ G+F +CGDL+FSGH A+T ++LL ++ Q G ++LLT+AT ++GRKHY+VDV L ++I+ L FF F+ G +P Sbjct: 135 LWSMFTVSLLSFRSAVRAKCGDDVRALADHAEIFIAVSLAMVFSTNIAFYLHAPSDTPLRDLGFMLVPAQAVDSPWRPVSDVLTAVMPVVAMVQTYFMTRANRCRVISTFFRVATVSYALRMLTVSLTSLPGPAPHCRPGSGLYFPPQTWIDIVTRVGPMYGNFNSCGDLIFSGHMAYTNSALLLYLRTMDQHFVRFSKLRWTLGAVFLLTLATLCVSGRKHYSVDVMLGIMISTLVFFHFEHGWVP 381
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: H3GCQ3_PHYRM (PAP2_C domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GCQ3_PHYRM) HSP 1 Score: 207 bits (526), Expect = 1.210e-58 Identity = 107/249 (42.97%), Postives = 157/249 (63.05%), Query Frame = 1 Query: 67 LWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPR-PPLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSA-YDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQ--APRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLP 801 +WLL+ F ++RR + + + L +M + EIF+++S++M N + +H P PL D+GF LIP QG+ S WRP+SDILT +P +T+ R RCR ++ +FR+ ++ Y +R L V++TSLPGPAPHC A S Y PP+ W D+ TR+GP+ G++ +CGDL+FSGH A+T ++LL ++ + A R A G YL T+A IAGRKHYTVDV L ++I+ L FF F+ P Sbjct: 108 IWLLFAGTFFYVRRLVRSRVDVHLRGMMDHAEIFVAMSLVMVFSVNIAFYLHVPAVTPLKDLGFMLIPEQGLHSAWRPVSDILTAGVPVTFLLQTMVMTRPNRCRIVSSFFRIATICYFLRMLSVSVTSLPGPAPHCRAGSPDYFPPKTWIDIVTRVGPIYGNYNSCGDLIFSGHMAYTNSAVLLYLRTLDRNFAGRTASKIRWACGMAYLATLAALCIAGRKHYTVDVVLGLIISALVFFHFEHSWTP 356
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: A0A6A3DVY3_9STRA (PAP2_C domain-containing protein n=15 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DVY3_9STRA) HSP 1 Score: 206 bits (524), Expect = 2.390e-58 Identity = 106/249 (42.57%), Postives = 159/249 (63.86%), Query Frame = 1 Query: 67 LWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRP-PLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSA-YDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQ--APRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLP 801 +WLL+ F ++RR + + + L +M + EIF+++S++M N + +H P PL D+GF LIP QG+ S WRP+SDILT +P + +T+F R RCR ++ +FR+ ++ Y +R L V++TSLPGPAPHC A S Y PP+ W D+ TR+GP+ G++ +CGDL+FSGH A+T ++LL ++ + A R A G +L+ +A IAGRKHYTVDV L ++I+ L FF F+ P Sbjct: 108 IWLLFAGTFFYVRRLVRSRVDVHLRGMMDHAEIFVAMSLVMVFSVNVAFYLHVPATTPLKDLGFMLIPEQGLHSKWRPVSDILTAGVPVVFLLQTIFMTRPNRCRIVSSFFRIATICYFLRMLTVSVTSLPGPAPHCRAGSPDYFPPQTWIDIVTRVGPIYGNYNSCGDLIFSGHMAYTNSAVLLYLRTLDRNFAGRTASKIRWACGMTHLMVLAALCIAGRKHYTVDVVLGLIISTLVFFHFEHSWTP 356
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: A0A6A3N5Y1_9STRA (PAP2_C domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3N5Y1_9STRA) HSP 1 Score: 206 bits (524), Expect = 2.390e-58 Identity = 106/249 (42.57%), Postives = 159/249 (63.86%), Query Frame = 1 Query: 67 LWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRP-PLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSA-YDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQ--APRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLP 801 +WLL+ F ++RR + + + L +M + EIF+++S++M N + +H P PL D+GF LIP QG+ S WRP+SDILT +P + +T+F R RCR ++ +FR+ ++ Y +R L V++TSLPGPAPHC A S Y PP+ W D+ TR+GP+ G++ +CGDL+FSGH A+T ++LL ++ + A R A G +L+ +A IAGRKHYTVDV L ++I+ L FF F+ P Sbjct: 108 IWLLFAGTFFYVRRLVRSRVDVHLRGMMDHAEIFVAMSLVMVFSVNVAFYLHVPATTPLKDLGFMLIPEQGLHSKWRPVSDILTAGVPVVFLLQTIFMTRPNRCRIVSSFFRIATICYFLRMLTVSVTSLPGPAPHCRAGSPDYFPPQTWIDIVTRVGPIYGNYNSCGDLIFSGHMAYTNSAVLLYLRTLDRNFAGRTASKIRWACGMTHLMVLAALCIAGRKHYTVDVVLGLIISTLVFFHFEHSWTP 356
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: A0A0P1APX3_PLAHL (Transmembrane protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APX3_PLAHL) HSP 1 Score: 204 bits (519), Expect = 3.320e-58 Identity = 106/249 (42.57%), Postives = 159/249 (63.86%), Query Frame = 1 Query: 67 LWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRP-PLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSA-YDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSF-RQAPRLVYAFVK-AAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLP 801 +WLL+ F +IRR + + + L VM + EIF+++S++M N S +H P PL D+GF +IP Q + S WRP+SDILT +P + +T R RCR ++ +FR++++ Y +R L V++TSLPGPAPHC S Y PP W D+ATR+GP+ G++ +CGDL+FSGH A+T ++LL ++ R P + + ++ A G YL+ +A IAGRKHYTVDV L ++++ L FF F+ P Sbjct: 55 IWLLFAGTFFYIRRLVRSRVDANLRGVMDHAEIFVAMSLVMVFSVNISFYLHVPATTPLKDLGFMIIPEQKLHSKWRPVSDILTAGMPVIFLLQTAVMTRPNRCRVVSSFFRIVTICYFLRMLTVSVTSLPGPAPHCRVGSHDYFPPTSWIDIATRVGPIYGNYNSCGDLIFSGHMAYTVSAVLLYLRTLDRNFPGRMASKIRWACGLTYLIILAVLCIAGRKHYTVDVVLGLIVSTLVFFHFEHSWTP 303 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9972.21621.1 >prot_Ecto-sp13_S_contig9972.21621.1 ID=prot_Ecto-sp13_S_contig9972.21621.1|Name=mRNA_Ecto-sp13_S_contig9972.21621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=434bp QYVCPHVGNADPGRRVGKTALPLWLLWVLGFQHIRRHILAMLQPPLARVMback to top mRNA from alignment at Ecto-sp13_S_contig9972:1..5119- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9972.21621.1 ID=mRNA_Ecto-sp13_S_contig9972.21621.1|Name=mRNA_Ecto-sp13_S_contig9972.21621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9972:1..5119- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9972:1..5119- >mRNA_Ecto-sp13_S_contig9972.21621.1 ID=mRNA_Ecto-sp13_S_contig9972.21621.1|Name=mRNA_Ecto-sp13_S_contig9972.21621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1302bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9972:1..5119- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |