mRNA_Ecto-sp13_S_contig9970.21618.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9970.21618.1 vs. uniprot
Match: A0A6H5JK68_9PHAE (Cysteine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK68_9PHAE) HSP 1 Score: 303 bits (776), Expect = 8.210e-97 Identity = 156/169 (92.31%), Postives = 158/169 (93.49%), Query Frame = 1
Query: 1 QDPARTKEPELALMSSLSDAKKEVKKCLCDDFDTPGAVGALQELVKKVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKVFGLASPGPALGFSQGGDARGGGDAGGEGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDQA 507
+DPARTKEPEL LMSSLSDAKKEVKKCLCDDFDTPGA+GALQELVKKVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKVFGLASPGPALGFSQGGDA G EASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDQA
Sbjct: 389 RDPARTKEPELTLMSSLSDAKKEVKKCLCDDFDTPGAMGALQELVKKVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKVFGLASPGPALGFSQGGDAGGXXXXXXXXXEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDQA 557
BLAST of mRNA_Ecto-sp13_S_contig9970.21618.1 vs. uniprot
Match: A0A835Z463_9STRA (Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z463_9STRA) HSP 1 Score: 150 bits (380), Expect = 2.200e-39 Identity = 88/168 (52.38%), Postives = 106/168 (63.10%), Query Frame = 1
Query: 4 DPARTKEPELALMSSLSDAKKEVKKCLCDDFDTPGAVGAL-QELVKKVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKVFGLASPGPALGFSQGGDARGGGDAGGEGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDQ 504
D R E E+AL L + K V+ LCDDFDTP A+ L +LV+ VNKYI+ K AG VR A EYVT+IFKVFGL + G +GF D EGG SRE +GPVLD LS FR +VR C RAGD+ GV++ACD VR++ LP +GVRLEDKGDQ
Sbjct: 383 DELRLGEGEIALYRKLEECKSGVRAALCDDFDTPTAIKLLASDLVRTVNKYIQEKTDAGLKSHYIVVRTAGEYVTRIFKVFGLVTSGVDMGF----------DVEQEGG-ISREEAMGPVLDALSTFRTQVRTCARAGDSAGVISACDQVRDDALPPLGVRLEDKGDQ 539
BLAST of mRNA_Ecto-sp13_S_contig9970.21618.1 vs. uniprot
Match: A0A7S1XX51_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX51_9STRA) HSP 1 Score: 122 bits (306), Expect = 4.470e-30 Identity = 72/160 (45.00%), Postives = 98/160 (61.25%), Query Frame = 1
Query: 19 KEPELALMSSLSDAKKEVKKCLCDDFDTPGAVGALQELVKKVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKVFGLASPGPALGFSQGGDARGGGDAGGEGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKG 498
++ E+A S+L K++V LCDDFDTP + L LV+ N Y + E A P V ++ +A Y+TK+F+VFGL +GF G +AG GG ASRE LGP+LDVL+ FR+KVR R+GD+ VL+ACD +R+ L +GVRLED G
Sbjct: 137 RQKEIAFESALLAIKQQVHDALCDDFDTPTVLQILLRLVRITNVYSKVFEPA--PPVPLIIKESARYITKMFRVFGLVEGDADMGF--------GSEAGAAGGGASREETLGPLLDVLTAFREKVRAAARSGDSAEVLSACDALRDVDLVELGVRLEDAG 286
BLAST of mRNA_Ecto-sp13_S_contig9970.21618.1 vs. uniprot
Match: A0A7S3L6K9_9STRA (Cysteine--tRNA ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6K9_9STRA) HSP 1 Score: 122 bits (307), Expect = 2.320e-29 Identity = 73/157 (46.50%), Postives = 94/157 (59.87%), Query Frame = 1
Query: 31 LALMSSLSDAKKEVKKCLCDDFDTPGAVGALQELVKKVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKVFGLASPGPALGFSQGGDARGGGDAGGEGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGD 501
+ L +L+D + +V L DDFDTP A+ L +LVK N Y+E + +V VR A Y+TK+FKVFGL P ++GF + G GGE +E IL PVLDVL FR VR RAGDT+ +L CD R+ELLP +GVRLEDKG+
Sbjct: 393 VTLQQTLTDVQAKVGAALRDDFDTPTAMTKLGDLVKATNVYLETETTQ---VVGLVVRSVASYITKMFKVFGLI-PNDSIGFGL--------EDGSSGGEG-KEEILSPVLDVLMAFRSSVREQARAGDTQAILKLCDKFRDELLPPLGVRLEDKGE 536
BLAST of mRNA_Ecto-sp13_S_contig9970.21618.1 vs. uniprot
Match: D8M9S2_BLAHO (Cysteine--tRNA ligase n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M9S2_BLAHO) HSP 1 Score: 118 bits (296), Expect = 6.280e-28 Identity = 65/162 (40.12%), Postives = 96/162 (59.26%), Query Frame = 1
Query: 7 PARTKEPELALMSSLSDAKKEVKKCLCDDFDTPGAVGALQELVKKVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKVFGLASPGPALGFSQGGDARGGGDAGGEGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLED 492
P R + E+ L + L A+ V CLCDDFDT GA+ AL+ LV+ V +Y+E + P+V C A +V+++F+VFGL P P +GF+ G +A A REA+L PV+++LS+FR V+ D +L CD +R+++LP VG+RLED
Sbjct: 340 PQRWDDAEVQLNAQLDAARTSVHTCLCDDFDTAGAMEALEGLVRAVYRYLETAKHIVAPLVLSC----AGFVSQMFRVFGLIEPEPKIGFAAGEEA------------ADREAVLSPVVEILSKFRTVVKK--NRADPAALLKLCDEIRDDILPFVGIRLED 483
BLAST of mRNA_Ecto-sp13_S_contig9970.21618.1 vs. uniprot
Match: A0A7S3XKM0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKM0_HETAK) HSP 1 Score: 114 bits (285), Expect = 8.960e-28 Identity = 73/161 (45.34%), Postives = 91/161 (56.52%), Query Frame = 1
Query: 28 ELALMSSLSDAKKEVKKCLCDDFDTPGAVGALQELVKKVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKVFGLASPGPA-LGFSQGGDARGGGDAGGEGGEASREAILGPVLDVLSEFRDKVRGCGRAGD---TKGVLAACDHVREELLPGVGVRLEDKG 498
E+AL +LS+AK V LCDDFD P A+ LQ+LV+ N Y+E +V R AA+YVTKIF+ FGL G A +GF G A G +E +L PVLD L FRD+VR +AG + VL ACD VR+ LP +GVRLED G
Sbjct: 148 EVALGRALSEAKAGVHAALCDDFDCPSALKELQKLVRASNVYLEGNAAPATLLV----RAAAQYVTKIFRTFGLVPDGGADIGFPVEGAAEGXXX------XXXKEEVLSPVLDALVAFRDRVRAAAKAGGDGAARAVLDACDEVRDMALPPLGVRLEDGG 298
BLAST of mRNA_Ecto-sp13_S_contig9970.21618.1 vs. uniprot
Match: A0A7S0C423_9STRA (Cysteine--tRNA ligase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C423_9STRA) HSP 1 Score: 116 bits (290), Expect = 4.150e-27 Identity = 70/159 (44.03%), Postives = 92/159 (57.86%), Query Frame = 1
Query: 28 ELALMSSLSDAKKEVKKCLCDDFDTPGAVGALQELVKKVNKYIEAKERAG-EPIVADCVRGAAEYVTKIFKVFGLA--SPGPALGFSQGGDARGGGDAGGEGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDK 495
E AL ++ + K+V K DDFDTPG + AL +L+K +NKY+EA E + ++A VR A +VTKI KV GL + G +GF G + +RE L P+LDVL FR VR RA D KGVL ACD R++ LP +G+RLEDK
Sbjct: 329 EFALDAATTACMKKVDKAFRDDFDTPGVLTALSDLIKDMNKYLEAVEISDTHKVIALVVRRAGLFVTKILKVLGLIPDNSGVEMGFPFDGTD-----------DVNREEALAPILDVLMSFRSTVRDAARAKDMKGVLTACDEFRDDDLPPLGIRLEDK 476
BLAST of mRNA_Ecto-sp13_S_contig9970.21618.1 vs. uniprot
Match: A0A196SMU0_BLAHN (Cysteine--tRNA ligase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SMU0_BLAHN) HSP 1 Score: 116 bits (290), Expect = 4.610e-27 Identity = 64/162 (39.51%), Postives = 93/162 (57.41%), Query Frame = 1
Query: 7 PARTKEPELALMSSLSDAKKEVKKCLCDDFDTPGAVGALQELVKKVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKVFGLASPGPALGFSQGGDARGGGDAGGEGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLED 492
P R E E+A+ ++L +++V KCLCDDFDT GA+ AL+ LV+ +Y+E +VA V A YVT +FKVFGL P ++GF Q GG E +L PV+++LSEFR +V+ + +L CD +R+++LP G+RLED
Sbjct: 374 PERWDEKEVAMNAALMKCREDVHKCLCDDFDTEGAMAALEALVRAYYQYVEGASH----VVAPLVTSVAAYVTSMFKVFGLIDPEVSIGFGQ------------TGGSVDEETVLTPVVNILSEFRTRVKLA--RNNPAELLRLCDELRDDILPFAGIRLED 517
BLAST of mRNA_Ecto-sp13_S_contig9970.21618.1 vs. uniprot
Match: A0A812UK10_SYMMI (Cysteine--tRNA ligase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UK10_SYMMI) HSP 1 Score: 115 bits (289), Expect = 6.300e-27 Identity = 67/164 (40.85%), Postives = 99/164 (60.37%), Query Frame = 1
Query: 7 PARTKEPELALMSSLSDAKKEVKKCLCDDFDTPGAVGALQELVKKVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKVFGLASPGPALGFSQGGDARGGGDAGGEGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKG 498
P + ++ALM K+ V+ LCDDFDTP AVG L++L+++VNKYIE+ G +++ R Y+T + + FGL +GFS ++ GG AG ++E +L P LD L++FR+ VR GDT VLAA D +R+++LP +GVR+EDKG
Sbjct: 372 PQHVGQRDVALMQFQEATKENVRAALCDDFDTPTAVGHLKDLIREVNKYIESGV-VGSAVLSSTAR----YITSVLRTFGLVQDDNDIGFSL--ESSGGESAG------NKEELLAPYLDALTKFRETVRIAAINGDTAAVLAAADCLRDDVLPPLGVRMEDKG 522
BLAST of mRNA_Ecto-sp13_S_contig9970.21618.1 vs. uniprot
Match: A0A7S3H856_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H856_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.110e-25 Identity = 68/168 (40.48%), Postives = 89/168 (52.98%), Query Frame = 1
Query: 34 ALMSSLSDAKKEVKKCLCDDFDTPGAVGALQELVKKVNKYIEAKERAGEPIVADC------------VRGAAEYVTKIFKVFGLASPGPALGFS-QGGDARGGGDAGGEGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKG 498
AL L +AK V+ CL DDFDTP AV L EL+++ NKY+E D + A Y+T I FGL G +GF A G G A G S+E +L P LDVL+ FR +VR +GDTK VL+ D +R+++LP +GVR+EDKG
Sbjct: 269 ALQQKLEEAKTNVRACLLDDFDTPRAVSVLTELIRECNKYVETGTATPISAATDLGPLPENGLSSVVLSSVARYITSILSTFGLVPSGSDIGFPLMESGAAGEGAADG----FSKEVLLTPFLDVLTAFRQEVRLAAMSGDTKAVLSIADKLRDDILPTLGVRMEDKG 432 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9970.21618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9970.21618.1 >prot_Ecto-sp13_S_contig9970.21618.1 ID=prot_Ecto-sp13_S_contig9970.21618.1|Name=mRNA_Ecto-sp13_S_contig9970.21618.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=169bp QDPARTKEPELALMSSLSDAKKEVKKCLCDDFDTPGAVGALQELVKKVNKback to top mRNA from alignment at Ecto-sp13_S_contig9970:2721..5450- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9970.21618.1 ID=mRNA_Ecto-sp13_S_contig9970.21618.1|Name=mRNA_Ecto-sp13_S_contig9970.21618.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2730bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9970:2721..5450- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9970:2721..5450- >mRNA_Ecto-sp13_S_contig9970.21618.1 ID=mRNA_Ecto-sp13_S_contig9970.21618.1|Name=mRNA_Ecto-sp13_S_contig9970.21618.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9970:2721..5450- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |