mRNA_Ecto-sp13_S_contig9970.21616.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: A0A6H5JK68_9PHAE (Cysteine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK68_9PHAE) HSP 1 Score: 157 bits (396), Expect = 5.590e-43 Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1 Query: 1 AVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPIVKDK 255
AVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKG+DGKA YTQFDDNGVPTHDAAGEPIVKDK
Sbjct: 557 AVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGEDGKALYTQFDDNGVPTHDAAGEPIVKDK 641
BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: A0A812UK10_SYMMI (Cysteine--tRNA ligase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UK10_SYMMI) HSP 1 Score: 64.7 bits (156), Expect = 2.980e-10 Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 1 Query: 1 AVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPIVK 249
+VWKL+DPA L ER+Q+E + + E +AE +RK E+E + K+P + FR + ++ FDDNG+PTHD G PI K
Sbjct: 529 SVWKLDDPATLRLEREQKEAVKRAKEEQRAEARRKQLEREEKAKVPPQDMFRSMIDQ-----FSAFDDNGMPTHDTQGVPISK 606
BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: L1K2A7_GUITC (Cysteine--tRNA ligase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K2A7_GUITC) HSP 1 Score: 58.2 bits (139), Expect = 6.030e-8 Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 4 VWKLEDPAVLARERQQR----EQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPIVK 249
+WKL+DP VLARERQQ+ + Q +++E K E RK EK + + A E F+ L Y++FDD G+PTH+AAGE + K
Sbjct: 578 LWKLDDPEVLARERQQKLMQAAEAQKKKVENKLEKVRKELEKWSGCSVAAGEMFKPLTDK-----YSKFDDQGIPTHNAAGEELSK 658
BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: A0A7S0T994_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0T994_9CHLO) HSP 1 Score: 57.8 bits (138), Expect = 7.990e-8 Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1 Query: 1 AVWKLEDP----AVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPIVK 249
A+WKL D L R+R+ + ++ + EAKAE RKAAEKEA+ KIP SE F K + + Y+++DD G+PTHD GE + K
Sbjct: 323 ALWKLYDADELKKELERDREAKALKEAKAAEAKAELARKAAEKEAKAKIPPSEMF---KIGEYEGLYSKYDDEGLPTHDKDGEELPK 406
BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: A0A7S0T8V7_9CHLO (Cysteine--tRNA ligase n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0T8V7_9CHLO) HSP 1 Score: 57.8 bits (138), Expect = 8.280e-8 Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1 Query: 1 AVWKLEDP----AVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPIVK 249
A+WKL D L R+R+ + ++ + EAKAE RKAAEKEA+ KIP SE F K + + Y+++DD G+PTHD GE + K
Sbjct: 632 ALWKLYDADELKKELERDREAKALKEAKAAEAKAELARKAAEKEAKAKIPPSEMF---KIGEYEGLYSKYDDEGLPTHDKDGEELPK 715
BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: A0A090M3R1_OSTTA (Cysteinyl-tRNA synthetase/mycothiol ligase (Fragment) n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M3R1_OSTTA) HSP 1 Score: 53.5 bits (127), Expect = 2.450e-7 Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1 Query: 40 ERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPIVK 249
ER+ +E+++ + AK E RK EKEA+ K+P SE F+ ++ Y++F D+GVPTHDA GEP+ K
Sbjct: 2 EREPKEEKERAKAAAKDEAARKXXEKEAKAKVPPSEMFKTF--EEYAGLYSKFGDDGVPTHDAEGEPLQK 69
BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: A0A1Y1I5L6_KLENI (Cysteine--tRNA ligase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I5L6_KLENI) HSP 1 Score: 54.7 bits (130), Expect = 1.010e-6 Identity = 31/85 (36.47%), Postives = 51/85 (60.00%), Query Frame = 1 Query: 1 AVWKLEDPAVLARERQQREQEQ----LRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPI 243
+VWKL+DP + +ER +++ ++LE K ++K+K EK + +P FR + G+ Y+ F+D GVPTHDAAG+ +
Sbjct: 676 SVWKLDDPETMRKERDAKKEAADAAAKQKLERKRDSKKKDIEKWTKASVPPEGLFRNARDAQGQPKYSAFNDEGVPTHDAAGKEL 760
BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: A0A6U1C2P7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1C2P7_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 3.390e-6 Identity = 40/85 (47.06%), Postives = 50/85 (58.82%), Query Frame = 1 Query: 7 WKLEDPAVLARERQQREQEQLRRLEAKAET---KRKAAEKEARKK-IPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPIVK 249
WKL+DPAVL RE ++R Q QL + AK E KR+A K A+ IP E + D KAF D+ G+PT DAAGEP+ K
Sbjct: 113 WKLDDPAVLVREIEERRQAQLEQQRAKREKEIGKRRAELKSAQDAAIPPQELLPRTRAADFKAF----DEKGMPTLDAAGEPVAK 193
BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: M4BXK3_HYAAE (DALR_2 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXK3_HYAAE) HSP 1 Score: 52.0 bits (123), Expect = 8.830e-6 Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1 Query: 1 AVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGD---DGKAFYTQFDDNGVPTHDAAGEPIVK 249
AVWKL + L E ++++QE+++ K E E EARKK +E + L D + K Y++FDDNG+PTHDAAGEP+ K
Sbjct: 446 AVWKLANKDELLEEIEKKKQEKIK----KEELXXXRLEDEARKKAELAEKAKILPNDMFLELKDKYSKFDDNGLPTHDAAGEPLSK 527
BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: B7FUX6_PHATC (Cysteine--tRNA ligase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FUX6_PHATC) HSP 1 Score: 52.0 bits (123), Expect = 8.920e-6 Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 1 Query: 1 AVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAF-YTQFDDNGVPTHDAAGEPIVKDK 255
+VWKL DPA L RE +Q+E E ++P EY R L +D Y+QFD++G+PTHDA GEP+ K++
Sbjct: 536 SVWKLADPAELLREMEQKEAEAXXXXXXXXXXXXXXXXXXXLNRLPPVEYMRQLTLEDNVTLMYSQFDEDGIPTHDATGEPVNKNQ 621 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9970.21616.1 >prot_Ecto-sp13_S_contig9970.21616.1 ID=prot_Ecto-sp13_S_contig9970.21616.1|Name=mRNA_Ecto-sp13_S_contig9970.21616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp AVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYback to top mRNA from alignment at Ecto-sp13_S_contig9970:158..1972- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9970.21616.1 ID=mRNA_Ecto-sp13_S_contig9970.21616.1|Name=mRNA_Ecto-sp13_S_contig9970.21616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1815bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9970:158..1972- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9970:158..1972- >mRNA_Ecto-sp13_S_contig9970.21616.1 ID=mRNA_Ecto-sp13_S_contig9970.21616.1|Name=mRNA_Ecto-sp13_S_contig9970.21616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9970:158..1972- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |