mRNA_Ecto-sp13_S_contig9969.21614.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig9969.21614.1
Unique Name	mRNA_Ecto-sp13_S_contig9969.21614.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: D8LGK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGK2_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 5.590e-35
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 2

Query:  149 YDPSTRPRTPVPSPAGPRRSGSGGGRAMEGNMADAMEHCKFALRALEKKDVDLAVQKLHDALQQL 343
            YDPSTRPRTPVPS AGPRRSGSGGGRAMEGNMADAMEHCKFALRALEKKDVDLAVQKLH+ALQQL
Sbjct:   78 YDPSTRPRTPVPSAAGPRRSGSGGGRAMEGNMADAMEHCKFALRALEKKDVDLAVQKLHEALQQL 142

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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: G4YHA5_PHYSP (Vta1 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YHA5_PHYSP)

HSP 1 Score: 69.3 bits (168), Expect = 1.650e-11
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1

Query:    1 GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGA-GEDVRSVDT 165
            G FFD+L QFG   E++  +R YCK+KA+ ILKA+KEGK+PTPG   G D++SV T
Sbjct:  124 GTFFDILNQFGDVSEDVVEKRRYCKYKAATILKAIKEGKVPTPGPPEGLDLKSVST 179

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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: A0A397D5Y7_9STRA (Vta1 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D5Y7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.480e-11
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1

Query:    1 GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGAGEDVRSVDTP 168
            G FFD+L+QFG P E++  +  Y K+KA+ ILKA+KEG+ PTPG   E VR   +P
Sbjct:  120 GSFFDILKQFGPPSEDVLEKTKYSKFKAADILKAIKEGRTPTPGAPSEQVRLSPSP 175

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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: A0A8J5JH99_9STRA (Vta1 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JH99_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 8.400e-11
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1

Query:    1 GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGA-GEDVRSV 159
            G FFD+L QFG   E++  +R YCK+KA+ ILKA+KEGK PTPG   G D++SV
Sbjct:  122 GTFFDILSQFGDISEDVAEKRRYCKYKAATILKAIKEGKTPTPGPPEGLDMKSV 175

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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: D8LGK1_ECTSI (Vta1_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGK1_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.560e-10
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 2

Query:  218 GGRAMEGNMADAMEHCKFALRALEKKDVDLAVQKLHDALQQL 343
            G RAMEG +ADAMEHC+FA+RALE +D D A QKL +ALQ+L
Sbjct:   29 GSRAMEGKLADAMEHCRFAIRALEFRDADSAAQKLREALQKL 70

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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: A0A3R6W3I3_9STRA (Vta1 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6W3I3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.190e-10
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1

Query:    1 GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGAGEDVR 153
            G FFD+L+QFG P E++  +  Y K+KA+ ILKA+KEG+ PTPG   E V+
Sbjct:   78 GSFFDILKQFGTPSEDVLEKTKYSKFKAADILKAIKEGRTPTPGAPSEQVQ 128

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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: A0A024TGV6_9STRA (Vta1 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TGV6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.670e-10
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1

Query:    1 GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGAGEDVRSVDTPEDARAVP 189
            G FFD+L+QFG P E++  +  Y K+KA+ ILKA+KEG+ PTPG   E +   +TP+D    P
Sbjct:  120 GSFFDILKQFGTPSEDVLEKTKYSKFKAADILKAIKEGRTPTPGAPSEQI--PNTPDDDGVAP 180

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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: A0A329T423_9STRA (Vta1 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T423_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.640e-10
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1

Query:    1 GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGA-GEDVRSVDTPEDARA 183
            G FFD+L QFG   E++  +R YCK+KA+ ILKA+KEGK PTPG   G D++S +   D  A
Sbjct:  122 GTFFDILSQFGDISEDVAEKRRYCKYKAATILKAIKEGKTPTPGPPEGLDMKSAEDGSDDAA 183

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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: A0A7S4D8M6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8M6_HETAK)

HSP 1 Score: 63.9 bits (154), Expect = 6.650e-10
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 1

Query:    7 FFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGAGEDVRSVDTPEDARA 183
            F+D L QFG    E  +++ Y KWKA++ILKA+KEG+ P PGG GE+   V TP  A A
Sbjct:  121 FYDALAQFGDLAPEPLQKKKYAKWKAAEILKAVKEGRDPAPGGFGEETAKVVTPRSAEA 179

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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: A0A0W8AZU1_PHYNI (Vacuolar protein sorting-associated protein VTA1 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8AZU1_PHYNI)

HSP 1 Score: 64.3 bits (155), Expect = 6.900e-10
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1

Query:    1 GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGA-GEDVRSV 159
            G FFD+L QFG   E++  +R YCK+KA+ ILKA+KEGK PTPG   G D+++V
Sbjct:  124 GTFFDILNQFGDISEDVVEKRRYCKYKAATILKAIKEGKTPTPGPPEGLDMKNV 177

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
D8LGK2_ECTSI	5.590e-35	96.92	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
G4YHA5_PHYSP	1.650e-11	57.14	Vta1 domain-containing protein n=1 Tax=Phytophthor...	[more]
A0A397D5Y7_9STRA	5.480e-11	51.79	Vta1 domain-containing protein n=2 Tax=Aphanomyces...	[more]
A0A8J5JH99_9STRA	8.400e-11	57.41	Vta1 domain-containing protein n=1 Tax=Phytophthor...	[more]
D8LGK1_ECTSI	1.560e-10	69.05	Vta1_C domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A3R6W3I3_9STRA	2.190e-10	52.94	Vta1 domain-containing protein n=1 Tax=Aphanomyces...	[more]
A0A024TGV6_9STRA	2.670e-10	47.62	Vta1 domain-containing protein n=1 Tax=Aphanomyces...	[more]
A0A329T423_9STRA	5.640e-10	51.61	Vta1 domain-containing protein n=1 Tax=Phytophthor...	[more]
A0A7S4D8M6_HETAK	6.650e-10	50.85	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A0W8AZU1_PHYNI	6.900e-10	55.56	Vacuolar protein sorting-associated protein VTA1 n...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	67.0
Seed ortholog evalue	6.5e-09
Seed eggNOG ortholog	157072.XP_008878884.1
Preferred name	VTA1
Model size	348
KEGG rclass	RC00069,RC03004
KEGG ko	ko:K03260,ko:K05954,ko:K12199,ko:K20182
KEGG Reaction	R09844
KEGG Pathway	ko00900,ko01130,ko03013,ko04138,ko04144,ko05416,map00900,map01130,map03013,map04138,map04144,map05416
KEGG Module	M00428
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0001671,GO:0002376,GO:0002831,GO:0002833,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005829,GO:0006810,GO:0006914,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007032,GO:0007034,GO:0007275,GO:0008022,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009605,GO:0009607,GO:0009791,GO:0009814,GO:0009845,GO:0009987,GO:0010008,GO:0010154,GO:0010256,GO:0012505,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019058,GO:0019068,GO:0022411,GO:0022414,GO:0022607,GO:0030234,GO:0031090,GO:0031347,GO:0031349,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032101,GO:0032103,GO:0032501,GO:0032502,GO:0032504,GO:0032509,GO:0032511,GO:0032781,GO:0032879,GO:0032984,GO:0032991,GO:0036257,GO:0036258,GO:0036452,GO:0042802,GO:0042803,GO:0043085,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043462,GO:0043900,GO:0043902,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045324,GO:0046755,GO:0046907,GO:0046983,GO:0048316,GO:0048518,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0051049,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060589,GO:0060590,GO:0061458,GO:0061919,GO:0065007,GO:0065009,GO:0070013,GO:0070925,GO:0071840,GO:0071985,GO:0080001,GO:0080134,GO:0090351,GO:0097708,GO:0098542,GO:0098588,GO:0098772,GO:0098796,GO:0098805,GO:1900424,GO:1900426,GO:1902494,GO:1903335,GO:1904896,GO:1904903,GO:1904949,GO:1990621
Exons	2
EggNOG free text desc.	multivesicular body sorting pathway
EggNOG OGs	KOG0917@1,KOG0917@2759
EC	2.5.1.58
Cds size	345
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko01006,ko03012,ko03019,ko04131

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig9969:3853..5390+
coding sequence from alignment at Ecto-sp13_S_contig9969:3853..5390+

protein sequence of mRNA_Ecto-sp13_S_contig9969.21614.1

>prot_Ecto-sp13_S_contig9969.21614.1 ID=prot_Ecto-sp13_S_contig9969.21614.1|Name=mRNA_Ecto-sp13_S_contig9969.21614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGAGEDV
RSVDTPEDARAVPGGAAEIGQRRRQGDGGQHGGRDGALQVRSAGAGEEGC
GPCGAETARCPAAAH

mRNA from alignment at Ecto-sp13_S_contig9969:3853..5390+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig9969.21614.1 ID=mRNA_Ecto-sp13_S_contig9969.21614.1|Name=mRNA_Ecto-sp13_S_contig9969.21614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1538bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9969:3853..5390+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGTGTTCTTCGACGTGCTTCGTCAGTTCGGCGCCCCCGATGAGGAGAT
GGACCGAAGACGCATCTACTGCAAGTGGAAGGCCTCGCAGATCCTCAAGG
CTCTCAAGGAGGGGAAGATACCAACTCCCGGGGGGGCTGGGGAGGACGTG
AGTACTGCTGTTGTTGCTGATGTTGTTGCTGCTGTTGTGTTGCTGACGTT
TATTTGTCCCTCGCGCTGATCCCGGTTGAAGAGAGGCCGGTGGCCTATGT
GCGAGCGTGTTTTCTGGGGGGGGTGTTCCTTGGGACAGTCGTAGTGGATT
TACACAGTTGGCCTGTTTTTTGTTGTCGTTGTTGCTTTTTTTCTAAGGGG
CGGGGGCGGAACACTCAGGTGGGGGGGCTTGTTCTCTTCGGCACCTGCTA
AGAGAGAAGAAAGAACGGGAGTAAGGGAGTGCACGTGCGGGCGCGCGCGC
GAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAAAGAGACCTCTTCACGCCGAAGGGGGCACAGCTACAGCACGGCACTTC
ATGCGACCCGCGTCCACCCCCCACCAACCCTGTGCCATCGGTGTACATGT
GCATCTTCGCATCTTCGTCTTCTTCTTGTCATGCTGATCTACACAAGTCA
AGTTCTGCACGTTCGCAAGGACTATCGCGTCGTGCATTGCTGTCAGTTCA
TGACGAATGTTGCCGTGTGGTTACGTGCCGCTTGACTGTTCCCATCGCAT
CACCTCGACAAAAGCTGACCCAGCACAACGAAAATTCTGCCACATTTTTT
TCCCTCGGGGGGTCACCCACCACCACCTTACCTCCTCACCAGGTCGACAC
AGGAATGCCTTCCGGCAACGATGCAGCAGCACCGGCGCCGGCTCCGGAGG
CAACAGGAATGCCTTCTTCGAGCGGAGGCGGAGGCGGCGGCGGCGGCGGC
GGCGGGTACGGCGGTGGCACCGACGAATCGAAGCAGAACGACCCCCTAGC
CGGACTGATCCCCGAAGCCCCGAGGGACAACCCTTTCCTCAGCCCCTCGC
CCACCCACGAAGAAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCC
GCTGACGCCACGCCACCAGCTTCATCACCGTACCACCAGCCTCAGCCGTA
CGGGGGCGGCGGCGGAGCCCCCGGCCCGGAAGCCGCCGCAGCAGCGGGGT
ACCCGGGCGTGGCCGCCCCGTCCCCGTACGCAAGACCAGGGCCGCCGGCC
CCCGCGCCCGCTCCGTACGTGGCCCCCGTGGCCCCGGCCCCCTCTCCCTA
TGCGGCGCCGGCACCGGCGCCTGCGGCGCCGCGGCCGAGGTACGATCCGT
CGACACGCCCGAGGACGCCCGTGCCGTCCCCGGCGGGGCCGCGGAGATCG
GGCAGCGGCGGCGGCAGGGCGATGGAGGGCAACATGGCGGACGCGATGGA
GCACTGCAAGTTCGCTCTGCGGGCGCTGGAGAAGAAGGATGTGGACCTTG
CGGTGCAGAAACTGCACGATGCCCTGCAGCAGCTCACA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9969:3853..5390+

>mRNA_Ecto-sp13_S_contig9969.21614.1 ID=mRNA_Ecto-sp13_S_contig9969.21614.1|Name=mRNA_Ecto-sp13_S_contig9969.21614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9969:3853..5390+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGTGTTCTTCGACGTGCTTCGTCAGTTCGGCGCCCCCGATGAGGAGAT
GGACCGAAGACGCATCTACTGCAAGTGGAAGGCCTCGCAGATCCTCAAGG
CTCTCAAGGAGGGGAAGATACCAACTCCCGGGGGGGCTGGGGAGGACGTA
CGATCCGTCGACACGCCCGAGGACGCCCGTGCCGTCCCCGGCGGGGCCGC
GGAGATCGGGCAGCGGCGGCGGCAGGGCGATGGAGGGCAACATGGCGGAC
GCGATGGAGCACTGCAAGTTCGCTCTGCGGGCGCTGGAGAAGAAGGATGT
GGACCTTGCGGTGCAGAAACTGCACGATGCCCTGCAGCAGCTCAC