mRNA_Ecto-sp13_S_contig9967.21612.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A6H5JWS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS9_9PHAE) HSP 1 Score: 495 bits (1275), Expect = 7.660e-175 Identity = 264/287 (91.99%), Postives = 273/287 (95.12%), Query Frame = 1 Query: 76 MGKACALIMAVVGSCAMGVTSCFVIFAPGQSCPSVAASSPAVAVRATTCKRRQHHLQAKRKKSDRGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSRDVMDSLFEQADAVAAELEAPLVELELELAGGAEDAGETTADAAASFAGESAQRDQENAGTEKAIEDDELGEGVEEEEEWTGDPNNRPIWKFPVVSRVYRCDSRKQAKDVAVALASVR 936 MGKACA I+AVVGSCAMG+TSCFVIF PGQSCPSVAASSPAVAVRATTCKR KSDRGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSR+VMDSLFEQADAVAAELEAP VELELELAGGAE+AGETTADAAASFAGESAQR+Q++AGTEKA EDDELGEGVEEEEEWTGDPNNRPIWKFPVVSRVYRC+SRKQAKDVAVAL+SVR Sbjct: 1 MGKACAFIVAVVGSCAMGITSCFVIFTPGQSCPSVAASSPAVAVRATTCKRXXXXXXXXXXKSDRGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSREVMDSLFEQADAVAAELEAPWVELELELAGGAEEAGETTADAAASFAGESAQRNQDDAGTEKAKEDDELGEGVEEEEEWTGDPNNRPIWKFPVVSRVYRCNSRKQAKDVAVALSSVR 287
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: D7FPZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPZ2_ECTSI) HSP 1 Score: 368 bits (945), Expect = 1.530e-125 Identity = 211/287 (73.52%), Postives = 214/287 (74.56%), Query Frame = 1 Query: 76 MGKACALIMAVVGSCAMGVTSCFVIFAPGQSCPSVAASSPAVAVRATTCKRRQHHLQAKRKKSDRGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSRDVMDSLFEQADAVAAELEAPLVELELELAGGAEDAGETTADAAASFAGESAQRDQENAGTEKAIEDDELGEGVEEEEEWTGDPNNRPIWKFPVVSRVYRCDSRKQAKDVAVALASVR 936 MGKAC IMAVVGSCAMGVTSCFVIF PGQSCPSVAASSPAVAVRATTCKR KSDRGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKA+PCTSVLTGQGPDAVDEVEIDFSPLRTSR+VMDSL EQADAVAAELEAP VELELELAGGAEDAGET VYRCDSRKQAKDVAVAL+SVR Sbjct: 1 MGKACVFIMAVVGSCAMGVTSCFVIFTPGQSCPSVAASSPAVAVRATTCKRXXXXXXXXXXKSDRGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAMPCTSVLTGQGPDAVDEVEIDFSPLRTSREVMDSLSEQADAVAAELEAPRVELELELAGGAEDAGET----------------------------------------------------------VYRCDSRKQAKDVAVALSSVR 229
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A4D9CX39_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX39_9STRA) HSP 1 Score: 164 bits (414), Expect = 1.550e-44 Identity = 113/236 (47.88%), Postives = 138/236 (58.47%), Query Frame = 1 Query: 238 HLQAKRKKSD--------RGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSRDV-MDSLFEQADAVAAELEAPLVELELELAGGAEDAGETTADAAASFAGESAQRDQENAGTEKAIEDDELGEGVEEEEEWTGDPNNRPIWKFPVVSRVYRCDS-RKQAKDVA 915 HL ++ +SD +GRPSLDDVERLS GQAAKKRGTGSR +CHRLNE ERK +DLAKK G+V LRGTGYRRERKGSPL NI RQ CDA PC V G G DAVDEV +D SP R + V +DS +E A+ E + A G+ TA+A++ E ++ A E+ E EEE+W +PIW+ PV++ VY C R AK VA Sbjct: 67 HLPSQHARSDLLRRHAYAKGRPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEVHRGLGTDAVDEVVVDLSPYRPVQPVELDSAWEVCVALEEEFLSAA-------ASAVSQEGDGTANASSLGEQEGSKVPSLRAKWERMRESF-------EEEDW----EKKPIWELPVLAYVYNCTGDRGLAKKVA 284
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: W7TT87_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TT87_9STRA) HSP 1 Score: 163 bits (412), Expect = 2.050e-43 Identity = 109/225 (48.44%), Postives = 133/225 (59.11%), Query Frame = 1 Query: 238 HLQAKRKKSD--------RGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSRDV-MDSLFEQADAVAAELEAPLVELELELAGGAEDAGETTADAAASFAGESAQRDQENAGTEKAIEDDELGEGVEEEEEWTGDPNNRPIWKFPVVSRVYRC 885 HL ++ +SD +GRPSLDDVERLS GQAAKKRGTGSR +CHRLNE ERK +DLAKK G+V LRGTGYRRERKGSPL NI RQ CDA PC V G G DAVDEV +D SP R + V +DS +E A+ E L A A + TA+A++ E ++ A E+ E EEE+W +PIW+ PV++ VY C Sbjct: 67 HLPSQHARSDLLRRHAYAKGRPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEVHRGLGTDAVDEVVVDLSPYRPVQPVELDSAWEVCVALEEEF--------LSAAASAVSQEDGTANASSLGEQEGSEVPSLRAKWERMRESF-------EEEDW----EKKPIWELPVLAYVYNC 272
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A836CH55_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH55_9STRA) HSP 1 Score: 157 bits (398), Expect = 1.900e-42 Identity = 83/128 (64.84%), Postives = 99/128 (77.34%), Query Frame = 1 Query: 271 GRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSRDVMDSLFEQADAVAAELEAPLVE 654 GRPSLDDVER+S G+AAKKRGTGSRGVCHRLN ER ++LAKK+GY+VLRGTGYR+ERKGSPL NIFRQ+CDAKA+P S+ G +AVDEV +D SPLR +D + + DA+A E A VE Sbjct: 68 GRPSLDDVERISFGKAAKKRGTGSRGVCHRLNADERAEWELAKKRGYLVLRGTGYRKERKGSPLGNIFRQYCDAKAVPFVSLEQAVGINAVDEVHVDLSPLRQRE--LDDVKREIDALAMEFGASRVE 193
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A0G4EX23_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EX23_VITBC) HSP 1 Score: 135 bits (340), Expect = 5.600e-34 Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 1 Query: 271 GRPSLDDVERLSRGQAAKK--RGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLR--TSRDVMDSLFEQADAVAAELEAPLVE 654 GR +LDDVER+SRGQAA+K RGTGSR V HRLN+ ERK YD+AK + Y+V G+ YRRERKGSPL NI+RQ+CDA+A PC ++ G GP+ D V +D SPLR S VM L E ++ + L +VE Sbjct: 72 GRAALDDVERISRGQAARKKRRGTGSRNVPHRLNQEERKLYDIAKGRRYLVTSGSAYRRERKGSPLANIYRQWCDAQATPCINIQKGLGPEGSDLVVVDLSPLRRPASHPVMQQLLESLCSLLSSLGCTVVE 203
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A7S1BHJ3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BHJ3_9STRA) HSP 1 Score: 122 bits (305), Expect = 2.820e-29 Identity = 65/105 (61.90%), Postives = 74/105 (70.48%), Query Frame = 1 Query: 274 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSRD 588 RP+LDDVERLS G +KRGTGS+ VCHRLN+ ERK YDLAKK GY+ +RGTGYR++RKGSPL N FRQ CDA PC V + D V IDFS LR D Sbjct: 7 RPNLDDVERLSYGNGTRKRGTGSKYVCHRLNQEERKLYDLAKKAGYLSIRGTGYRKQRKGSPLCNTFRQRCDALEKPCLIVEKRKDGD---RVLIDFSTLRVKDD 108
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A2P6TIU8_CHLSO (Phosphate transporter n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TIU8_CHLSO) HSP 1 Score: 125 bits (314), Expect = 5.090e-28 Identity = 64/101 (63.37%), Postives = 79/101 (78.22%), Query Frame = 1 Query: 274 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLR 576 RPSLDDV+R+S G AAK RGTGSR V HRLN ERKAYDLAK++G++ + G+GYRRERKGSPL NI+RQ+CDA+ P +VL +GP D V +D+S LR Sbjct: 563 RPSLDDVQRISTGDAAKHRGTGSRAVPHRLNAEERKAYDLAKQKGFLTIAGSGYRRERKGSPLANIWRQWCDAQGRP--AVLLTKGPTGEDAVLVDYSTLR 661
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A7S2E7L9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E7L9_9STRA) HSP 1 Score: 115 bits (288), Expect = 5.680e-27 Identity = 67/106 (63.21%), Postives = 75/106 (70.75%), Query Frame = 1 Query: 274 RPSLDDVERLSRGQAAKK-RGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSRD 588 RP LDDVERLS GQ AKK RGTGSR VCHRLN ERK YDLAK+ GY+ +RGTGYR+ERKGSP+ N FRQ CDA C V+ + D D + IDFS LR D Sbjct: 7 RPFLDDVERLSYGQGAKKQRGTGSRFVCHRLNRDERKLYDLAKQAGYLTVRGTGYRKERKGSPVCNTFRQRCDALEEIC--VIVEKRADT-DTLIIDFSTLRVRDD 109
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A7S2BKI8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKI8_9STRA) HSP 1 Score: 117 bits (293), Expect = 6.700e-27 Identity = 56/104 (53.85%), Postives = 80/104 (76.92%), Query Frame = 1 Query: 274 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSR 585 RP+LDDVER+S G+ AKK+GTGSRGV HRLN+ ERK+YD+A+++G++ + G+G+R+ER+G+PL N +R +CDA A+P V G D D V +D SPLR ++ Sbjct: 41 RPTLDDVERISWGKPAKKKGTGSRGVPHRLNDDERKSYDIARRKGFLEVAGSGWRKERRGTPLLNTYRLWCDASAVPAIFVQKSAGGDE-DGVSVDLSPLRMTK 143 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9967.21612.1 >prot_Ecto-sp13_S_contig9967.21612.1 ID=prot_Ecto-sp13_S_contig9967.21612.1|Name=mRNA_Ecto-sp13_S_contig9967.21612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=288bp MGKACALIMAVVGSCAMGVTSCFVIFAPGQSCPSVAASSPAVAVRATTCKback to top mRNA from alignment at Ecto-sp13_S_contig9967:1469..4087+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9967.21612.1 ID=mRNA_Ecto-sp13_S_contig9967.21612.1|Name=mRNA_Ecto-sp13_S_contig9967.21612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2619bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9967:1469..4087+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9967:1469..4087+ >mRNA_Ecto-sp13_S_contig9967.21612.1 ID=mRNA_Ecto-sp13_S_contig9967.21612.1|Name=mRNA_Ecto-sp13_S_contig9967.21612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9967:1469..4087+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |