mRNA_Ecto-sp13_S_contig9958.21606.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A6H5KIY4_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY4_9PHAE) HSP 1 Score: 379 bits (973), Expect = 1.510e-110 Identity = 604/823 (73.39%), Postives = 609/823 (74.00%), Query Frame = 1 Query: 1 QAFRAERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIYYELNPDKKPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSXXXXXXXX--APSATXXXXXXXXXXXAATAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS----------------------------------------------------------------------------------------AVAGKGQG------------------ATVDDAPAGSPSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLKATAVAAGRAKGPDMGKPEESDNGVIAARVGVEKAAAGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAADPGLPADDGDANASDDSASMPIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----TTEDPKEDGTFCHMCRRGKSDPVAAKEGRIIGPFRGVVVRGQPRQLWVHRKCAEYSPEVEKVDGELENVAKAIRRGASLKCFACGKKGATVGCFNGRCRTVYHVPCARSHAGWDFEKADRGKEFYCL 2133
QAFRAERE+AGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIYYEL PDKKPR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX AP+A XXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AVAGKG+ A VDDAPAGSPSS XXXXXXXXXXXXX XXXXXXXXXXXXX GLK+TAVAA R KGPD GKPEE DNGVIAARVG EKAAAGK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LPA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TEDPKEDGTFCHMCRRGKSDP AKEGRIIGPFRGVVVRGQPRQLWVHRKCAEYSPEVE+VDGELENVAKAIRRGASLKCFACGKKGATVGCFNGRCRTVYHVPCARSHAGWDFEKADRGKEFYCL
Sbjct: 2322 QAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIYYELYPDKKPRARGRKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPATAAPAAAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXPAIAPIGSSPPYPSTAAPAAPKKAVVEGYAVAGKGEXXXXXXXXXXXXXXXXXXVAAVDDAPAGSPSSIPANAPSTPAXXXXXXXXXXXXXSSAAGPSAVGAGXXXXXXXXXXXXXS----------GLKSTAVAAERGKGPDKGKPEEGDNGVIAARVGAEKAAAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE-LPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDEEGEAPAETKENGGATEDPKEDGTFCHMCRRGKSDPFVAKEGRIIGPFRGVVVRGQPRQLWVHRKCAEYSPEVEEVDGELENVAKAIRRGASLKCFACGKKGATVGCFNGRCRTVYHVPCARSHAGWDFEKADRGKEFYCL 3133
BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: D8LQQ1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ1_ECTSI) HSP 1 Score: 287 bits (735), Expect = 2.800e-79 Identity = 244/711 (34.32%), Postives = 251/711 (35.30%), Query Frame = 1 Query: 1 QAFRAERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIYYELNPDKKPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSXXXXXXXXAPSATXXXXXXXXXXXAATAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVAGKGQGATVDDAPAGSPSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLKATAVAAGRAKGPDMGKPEESDNGVIAARVGVEKAAAGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAADPGLPADDGDANASDDSASMPIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTEDPKEDGTFCHMCRRGKSDPVAAKEGRIIGPFRGVVVRGQPRQLWVHRKCAEYSPEVEKVDGELENVAKAIRRGASLKCFACGKKGATVGCFNGRCRTVYHVPCARSHAGWDFEKADRGKEFYCL 2133
QAFRAERE+AGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIY + +E + XXXXXXXXXXXXXXXXXXX TE+PKEDGTFCHMCRRGKSDP AKEGRIIGPFRGV+VRGQPRQLWVHRKCAEYSPEVE+VDGELENVAKAIRRGASLKCFACGKKGATVGCFNGRCRTVYHVPCARSHAGWDFEKADRGKEFYCL
Sbjct: 1573 QAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RKDEVEXXXX----------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXTEEPKEDGTFCHMCRRGKSDPFVAKEGRIIGPFRGVIVRGQPRQLWVHRKCAEYSPEVEEVDGELENVAKAIRRGASLKCFACGKKGATVGCFNGRCRTVYHVPCARSHAGWDFEKADRGKEFYCL 1832
BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A7S3UUG2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUG2_HETAK) HSP 1 Score: 114 bits (284), Expect = 5.630e-25 Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 1 Query: 1 QAFRAERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAK 303
+A R E E +T RC+ VLRR+F E V AP++ + WG D++A GSYS++ GS++EDM++L PV L FAGEAT+ RYPA+VHGA+LSG+REA+
Sbjct: 108 EAARLEAEAEEDTVKRCMDVLRRLFGEEYVQAPVNYEVTNWGQDRFAMGSYSYIARGSTTEDMKILAEPVQNKLFFAGEATNSRYPASVHGAYLSGIREAR 208
BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A7S3UVW7_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVW7_HETAK) HSP 1 Score: 114 bits (284), Expect = 2.980e-23 Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 1 Query: 1 QAFRAERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAK 303
+A R E E +T RC+ VLRR+F E V AP++ + WG D++A GSYS++ GS++EDM++L PV L FAGEAT+ RYPA+VHGA+LSG+REA+
Sbjct: 320 EAARLEAEAEEDTVKRCMDVLRRLFGEEYVQAPVNYEVTNWGQDRFAMGSYSYIARGSTTEDMKILAEPVQNKLFFAGEATNSRYPASVHGAYLSGIREAR 420
BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A6N8YHE7_9ACTN (Amino_oxidase domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N8YHE7_9ACTN) HSP 1 Score: 99.0 bits (245), Expect = 1.980e-20 Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 1 Query: 16 ERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIY 312
E+ T E R + LR +F +V P P+ ++RWGSD W RGSYS++ VG E R + RPVG+ L FAGEAT R+P+TVHGA LSG R A+ IY
Sbjct: 61 EQYTDEELTSRAVETLRAMFGDV--PKPVDVLSTRWGSDPWTRGSYSYLPVGVEFETYREMSRPVGERLFFAGEATHSRFPSTVHGALLSGRRAARQIY 157
BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A8K0C5V2_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0C5V2_9COLE) HSP 1 Score: 95.9 bits (237), Expect = 9.710e-20 Identity = 58/123 (47.15%), Postives = 68/123 (55.28%), Query Frame = 1 Query: 16 ERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPV------GQS-------LHFAGEATSVRYPATVHGAWLSGVREAKMIYYEL--NPDKKP 339
E T GRC+ VLR IF + VP P +RW +D W+RGSYSFV VGSS D +L PV G S L FAGE T YPATVHGA+LSG+REA I ++ NP P
Sbjct: 2 ENVTDDVIVGRCIAVLRGIFGQTGVPQPKETVVTRWRADPWSRGSYSFVAVGSSGSDYDLLASPVIPPNAQGVSVTTGPAKLFFAGEHTIRNYPATVHGAFLSGLREASRIADQIIGNPCHPP 124
BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A8J8W0L6_9EURO (Lysine-specific histone demethylase 1 n=1 Tax=Penicillium sp. RFL-2021a TaxID=2839758 RepID=A0A8J8W0L6_9EURO) HSP 1 Score: 104 bits (260), Expect = 2.150e-19 Identity = 56/113 (49.56%), Postives = 71/113 (62.83%), Query Frame = 1 Query: 4 AFRAERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREA-KMIYYELNPDKKP 339
A++AE+ T E T LR +F TVP PL +RW SD + RGSYSFV G+ ED + RPVG +LHFAGEAT +PATVHGA+LSG+R A ++I L P + P
Sbjct: 737 AYQAEQSTDAEIVTEVTTQLRNVFKHATVPDPLEIVVTRWASDSFTRGSYSFVAAGAHPEDYETMARPVG-NLHFAGEATCGTHPATVHGAYLSGLRAAAEVIEATLGPIQIP 848
BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A7S0PUI6_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PUI6_MICPS) HSP 1 Score: 100 bits (250), Expect = 2.220e-19 Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1 Query: 4 AFRAERETAGETAGRCLTVLRRIFPE--VTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMI 309
A ER A +TVLRRI+ VTVP P+ + + WG+D++A GSYS + VG++ ED L PVG L+FAGEAT R+PAT+HGA+LSG+REA I
Sbjct: 229 ALEFERSGAANVVAETMTVLRRIYERRGVTVPDPIDSKCACWGTDEFAYGSYSNISVGATGEDYDALAEPVGDGLYFAGEATMRRHPATMHGAFLSGMREAARI 332
BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A5N4AW63_PHOPY (Amino_oxidase domain-containing protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4AW63_PHOPY) HSP 1 Score: 94.7 bits (234), Expect = 2.460e-19 Identity = 55/111 (49.55%), Postives = 63/111 (56.76%), Query Frame = 1 Query: 16 ERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPV------GQS-------LHFAGEATSVRYPATVHGAWLSGVREAKMI 309
E T GRC+ VLR IF + VP P +RW +D W+RGSYSFV VGSS D +L PV G S L FAGE T YPATVHGA+LSG+REA I
Sbjct: 2 ENVTDDVIVGRCIAVLRGIFGQSGVPQPKETVVTRWRADPWSRGSYSFVAVGSSGSDYDLLASPVIPPNDQGVSVTSGPAKLFFAGEHTIRNYPATVHGAFLSGLREASRI 112
BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: UPI001040CF8C (lysine-specific histone demethylase 1A-like n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI001040CF8C) HSP 1 Score: 95.1 bits (235), Expect = 4.480e-19 Identity = 52/100 (52.00%), Postives = 60/100 (60.00%), Query Frame = 1 Query: 16 ERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQS-----LHFAGEATSVRYPATVHGAWLSGVREA 300
E T GRC+ VL+ IF VP P +RW +D +ARGSYSFV VGSS D +L PV S L FAGE T YPATVHGA+LSG+REA
Sbjct: 34 ENVTDDVIVGRCIAVLKSIFGHAAVPQPKECVVTRWRADPFARGSYSFVAVGSSGTDYDLLAAPVPGSPGDNRLFFAGEHTMRNYPATVHGAFLSGLREA 133 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9958.21606.1 >prot_Ecto-sp13_S_contig9958.21606.1 ID=prot_Ecto-sp13_S_contig9958.21606.1|Name=mRNA_Ecto-sp13_S_contig9958.21606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=711bp QAFRAERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSback to top mRNA from alignment at Ecto-sp13_S_contig9958:3..5681- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9958.21606.1 ID=mRNA_Ecto-sp13_S_contig9958.21606.1|Name=mRNA_Ecto-sp13_S_contig9958.21606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5679bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9958:3..5681- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9958:3..5681- >mRNA_Ecto-sp13_S_contig9958.21606.1 ID=mRNA_Ecto-sp13_S_contig9958.21606.1|Name=mRNA_Ecto-sp13_S_contig9958.21606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2133bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9958:3..5681- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |