Homology
BLAST of mRNA_Ecto-sp13_S_contig9950.21597.1 vs. uniprot
Match: A0A6H5JV89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV89_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 7.480e-6 Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 2 Query: 11 VGKNCPEILL-VKMRIIRMMVAKTTRIPVKVLVNEFEYKVTIALVDACS 154
+GKNCPEI + +KMRI RMMVA T RI VKVL+N+FEYKV + L+ C+
Sbjct: 702 LGKNCPEIFVKMKMRI-RMMVANTRRIMVKVLLNDFEYKVCVDLMLWCN 749
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 1 |
Start | 0 |
Model size | 544 |
Hectar predicted targeting category | other localisation |
Exons | 1 |
Cds size | 342 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1681464255.1322455-CDS-Ecto-sp13_S_contig9950:5491..5833 | 1681464255.1322455-CDS-Ecto-sp13_S_contig9950:5491..5833 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9950 5492..5833 + |
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1681464255.1422048-UTR-Ecto-sp13_S_contig9950:5833..6034 | 1681464255.1422048-UTR-Ecto-sp13_S_contig9950:5833..6034 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig9950 5834..6034 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9950.21597.1 >prot_Ecto-sp13_S_contig9950.21597.1 ID=prot_Ecto-sp13_S_contig9950.21597.1|Name=mRNA_Ecto-sp13_S_contig9950.21597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
VGLGREELPGDSSCQNEDHQNDGSENNEDTGESTCKRIRVQGNNSLGRRV QFSSVVAAAVSVFDPKDSLASRLVSLVPMWARLDDDQNQLLHLTPPLPMT ISIALSLFQFLLL* back to topmRNA from alignment at Ecto-sp13_S_contig9950:5492..6034+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig9950.21597.1 ID=mRNA_Ecto-sp13_S_contig9950.21597.1|Name=mRNA_Ecto-sp13_S_contig9950.21597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9950:5492..6034+ (Ectocarpus species13 EcNAP12_S_4_19m) GTAGGGCTAGGTAGGGAAGAACTGCCCGGAGATTCTTCTTGTCAAAATGA
GGATCATCAGAATGATGGTAGCGAAAACAACGAGGATACCGGTGAAAGTA
CTTGTAAACGAATTCGAGTACAAGGTAACAATAGCCTTGGTAGACGCGTG
CAGTTTTCTTCTGTTGTTGCTGCTGCTGTTTCTGTCTTTGATCCGAAGGA
TAGTTTAGCCTCCCGCCTCGTCTCTCTGGTCCCCATGTGGGCGCGATTGG
ATGATGATCAGAATCAACTCCTTCATTTGACTCCGCCACTGCCCATGACT
ATTAGTATTGCGCTCTCCTTGTTTCAGTTTCTTCTGCTTTAGGCCAGTTG
TTATGGTAGATTTTCCGAGATTTGGAATCCGGGGGGTCGACAGAAAATGG
TAAGCCACCCCCCTGAAAGAGGAGGTCTGCGTACTGGATATCAAGCAGGG
CCCAGCACGGCATTTCGTTACTTAGTCCTCGCGTCACAGAGACCTGTTCC
TTATCAAACCACCGAGGCTGTACAGTCCACTGCTGTGAGCTTT back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig9950:5492..6034+ >mRNA_Ecto-sp13_S_contig9950.21597.1 ID=mRNA_Ecto-sp13_S_contig9950.21597.1|Name=mRNA_Ecto-sp13_S_contig9950.21597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9950:5492..6034+ (Ectocarpus species13 EcNAP12_S_4_19m) GTAGGGCTAGGTAGGGAAGAACTGCCCGGAGATTCTTCTTGTCAAAATGA GGATCATCAGAATGATGGTAGCGAAAACAACGAGGATACCGGTGAAAGTA CTTGTAAACGAATTCGAGTACAAGGTAACAATAGCCTTGGTAGACGCGTG CAGTTTTCTTCTGTTGTTGCTGCTGCTGTTTCTGTCTTTGATCCGAAGGA TAGTTTAGCCTCCCGCCTCGTCTCTCTGGTCCCCATGTGGGCGCGATTGG ATGATGATCAGAATCAACTCCTTCATTTGACTCCGCCACTGCCCATGACT ATTAGTATTGCGCTCTCCTTGTTTCAGTTTCTTCTGCTTTAG back to top
|