mRNA_Ecto-sp13_S_contig9948.21594.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9948.21594.1 vs. uniprot
Match: D7FGY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY9_ECTSI) HSP 1 Score: 912 bits (2358), Expect = 5.030e-314 Identity = 517/608 (85.03%), Postives = 543/608 (89.31%), Query Frame = 2
Query: 5 DLGRVARVKAFARTMEDMLSRARKALLKETLKAATATENDYNLKVSSIISRHSRKIGHLKTEARAKGDKALETALNDAETLSEERSWRSKTAAAIRRRALEPVVSWLGAAVDAELRRSERXXXXXXXXQHRIRASLEDFELIASEEQQDWMHHVRGRGHKATEVARTTISDHVAELILHERQRQQDQGGGYEAFPMAAGTARDLSSLQDCSSSGGEGTKCSTDDKDKPGEQGDMERGEQSMALNHPALDMNTVAVAQGVDGDYLDDCHSGGIFPQPQFQGAKRQRVVNQDGDGDVFVEPPSLKGLRVEVMAVLAAAEASCICDIDAWAEEARRRELEIISGRMAEAASGDIEEREMTETELETLESAFRAARKDAHEVVCSACWEAYSLRPSGVSGAGAAPSETKQPANPEPYATIGSTETAAPGVLAEEEKESSALWSSLERPLFSLKLALKTIPARSGGLRRDEKDGEEGKETKLTASRIVPSLEHELRAVVTDSFSSTGRVEEVRSMIRASSDELRVAFTLMSEETQAKRKVRDLELAERATIEPEEAQEARKAPANGEHNQSPPATAAEERVTDGERRNDVVPDSTWEIAREGCGALDGGISTE 1828
DLGRVARVKAFARTMEDMLSR RKALLKETL+AATATENDYNLKVSSIISRHS KI HLKTE+RAKGDKALETALN+AETLSEERSWRSKTAAAIRRRAL PVVSW+GAAVDAELRRSER XXXXXXX RIRASLE+FE ASEEQQDW+ HVRGRGH+ATEVART ISDHVAELILHERQRQQDQ G YEA MAA TA+DLSSLQDCSSS GEGT STDDKDKPGEQG ME+GEQ MALN AL MNTVA A+GV+GDY+DD HSGG FPQPQFQGAKRQ V NQDGDGDVFVEPPSL+GLRVE MAVLAAAEASC+CDIDAW EEARRRELE+IS MAEAASGDIEEREMTETELETLESAFRAARKDA E V SAC EAYSLRPSGVSGAGAAPS T++ A+PEPYATIGSTETAAPG LAEEE+E SALW SLERPL + KLALKTI A SGGL RDEK+GEEGKE KL ASRI+ LE ELRAVVTDSFSSTG+VEEVRSMIRASSDELRVAFTL+SEETQAKRKVRDLEL ERA EPEEAQEA KA A GEHNQSPPATAAE RVTD ER+NDVVP +WEIARE CGA DGGI TE
Sbjct: 1008 DLGRVARVKAFARTMEDMLSRTRKALLKETLQAATATENDYNLKVSSIISRHSGKISHLKTESRAKGDKALETALNEAETLSEERSWRSKTAAAIRRRALGPVVSWVGAAVDAELRRSERRXXXXXXXXXRIRASLENFERNASEEQQDWLRHVRGRGHEATEVARTAISDHVAELILHERQRQQDQEGRYEALSMAADTAKDLSSLQDCSSSAGEGT--STDDKDKPGEQGKMEQGEQLMALNQSALVMNTVAAAEGVNGDYVDDDHSGGNFPQPQFQGAKRQHVANQDGDGDVFVEPPSLEGLRVEAMAVLAAAEASCMCDIDAWVEEARRRELEMISAWMAEAASGDIEEREMTETELETLESAFRAARKDADEAVSSACCEAYSLRPSGVSGAGAAPSGTEKTADPEPYATIGSTETAAPGFLAEEEEECSALWPSLERPLSTQKLALKTIAAGSGGLCRDEKEGEEGKEAKLAASRIITGLECELRAVVTDSFSSTGKVEEVRSMIRASSDELRVAFTLISEETQAKRKVRDLELVERARTEPEEAQEA-KALAYGEHNQSPPATAAEGRVTDAERKNDVVPAISWEIAREDCGAPDGGIGTE 1612
BLAST of mRNA_Ecto-sp13_S_contig9948.21594.1 vs. uniprot
Match: A0A6H5K2B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B6_9PHAE) HSP 1 Score: 834 bits (2155), Expect = 1.780e-283 Identity = 477/611 (78.07%), Postives = 510/611 (83.47%), Query Frame = 2
Query: 5 DLGRVARVKAFARTMEDMLSRARKALLKETLK---AATATENDYNLKVSSIISRHSRKIGHLKTEARAKGDKALETALNDAETLSEERSWRSKTAAAIRRRALEPVVSWLGAAVDAELRRSERXXXXXXXXQHRIRASLEDFELIASEEQQDWMHHVRGRGHKATEVARTTISDHVAELILHERQRQQDQGGGYEAFPMAAGTARDLSSLQDCSSSGGEGTKCSTDDKDKPGEQGDMERGEQSMALNHPALDMNTVAVAQGVDGDYLDDCHSGGIFPQPQFQGAKRQRVVNQDGDGDVFVEPPSLKGLRVEVMAVLAAAEASCICDIDAWAEEARRRELEIISGRMAEAASGDIEEREMTETELETLESAFRAARKDAHEVVCSACWEAYSLRPSGVSGAGAAPSETKQPANPEPYATIGSTETAAPGVLAEEEKESSALWSSLERPLFSLKLALKTIPARSGGLRRDEKDGEEGKETKLTASRIVPSLEHELRAVVTDSFSSTGRVEEVRSMIRASSDELRVAFTLMSEETQAKRKVRDLELAERATIEPEEAQEARKAPANGEHNQSPPATAAEERVTDGERRNDVVPDSTWEIAREGCGALDGGISTE 1828
DL RVARVKAFARTMEDMLS ARKA+LKET + AATATENDYNLKVSSII R+S KIGHL+TEA+AKGDKALETALN+AETLSEERSWRSKTAAAIRRRAL VVSW+GAA DAELRRSER XXXXX QHRIRASLEDFE IASEEQQDW+ VR RGH+ATEVAR TISDHVAELILHE QR+QDQ GGYEA PMAA T RDLSSLQD SSS GEGT CSTDDKDKPGEQG+ME+GEQSMALNHPAL MNTVAVA+GV+ D++DD HSG FPQPQFQGAKRQ V NQD DGDVFV+PPSL+GLRVE MAVLAAAEASCICDIDAW E+ RRELE+IS MAE ASGD+EER+MTETELETLESAFRAAR D EVV SAC EAYSLRPSGVSGAGAAPSET++PANPEP ATIGSTE AAPG AEEE+E SALWSSLER L SLKLALKTIPA SGG R+DEK+GEEG ETKL ASRI+ LE ELRAVVTD+FSSTG+VEEV+S+IRASSDELRVAFTL+SE TQAK K SPPATAAE RVTDGERRND VP ST EIARE CGA DGGI TE
Sbjct: 1045 DLRRVARVKAFARTMEDMLSTARKAILKETQRGSVAATATENDYNLKVSSIIPRNSGKIGHLRTEAQAKGDKALETALNEAETLSEERSWRSKTAAAIRRRALGSVVSWVGAAADAELRRSERRQXXXXXHQHRIRASLEDFERIASEEQQDWLRQVRRRGHEATEVARATISDHVAELILHEPQREQDQEGGYEALPMAADTPRDLSSLQDRSSSAGEGTTCSTDDKDKPGEQGNMEQGEQSMALNHPALVMNTVAVAEGVNRDHVDDHHSGRKFPQPQFQGAKRQHVANQDDDGDVFVDPPSLEGLRVEAMAVLAAAEASCICDIDAWVEKTLRRELEMISAWMAETASGDVEERDMTETELETLESAFRAARTDTDEVVSSACCEAYSLRPSGVSGAGAAPSETEEPANPEPDATIGSTEFAAPGFFAEEEEECSALWSSLERSLSSLKLALKTIPAGSGGSRKDEKEGEEGIETKLAASRIITGLECELRAVVTDTFSSTGQVEEVQSIIRASSDELRVAFTLISEATQAKWK-------------------------------SPPATAAEGRVTDGERRNDFVPASTLEIAREDCGAPDGGIGTE 1624
BLAST of mRNA_Ecto-sp13_S_contig9948.21594.1 vs. uniprot
Match: A0A6H5JT92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT92_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 3.420e-13 Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 2
Query: 1358 LKTIPARSGGLRRDEKDGEEGKETKLTASRIVPSLEHELRAVVTDSFSSTGRVEEVRSMIRASSDELRVAFTLMSEET 1591
LKT PA SGG+ RDE++ E KETKL +SRI+ +E EL+AVVTDSF STG+ + SM R DEL VA + EET
Sbjct: 2 LKTTPAASGGICRDEEERGEEKETKLVSSRIITGVECELKAVVTDSFPSTGQGAKAWSMNRVVGDELTVASIVTGEET 79 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9948.21594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9948.21594.1 >prot_Ecto-sp13_S_contig9948.21594.1 ID=prot_Ecto-sp13_S_contig9948.21594.1|Name=mRNA_Ecto-sp13_S_contig9948.21594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=595bp MEDMLSRARKALLKETLKAATATENDYNLKVSSIISRHSRKIGHLKTEARback to top mRNA from alignment at Ecto-sp13_S_contig9948:3033..6089- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9948.21594.1 ID=mRNA_Ecto-sp13_S_contig9948.21594.1|Name=mRNA_Ecto-sp13_S_contig9948.21594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3057bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9948:3033..6089- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9948:3033..6089- >mRNA_Ecto-sp13_S_contig9948.21594.1 ID=mRNA_Ecto-sp13_S_contig9948.21594.1|Name=mRNA_Ecto-sp13_S_contig9948.21594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1785bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9948:3033..6089- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |