mRNA_Ecto-sp13_S_contig9946.21593.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9946.21593.1 vs. uniprot
Match: D7FWU2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU2_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 1.330e-14 Identity = 57/120 (47.50%), Postives = 62/120 (51.67%), Query Frame = 1 Query: 37 KENIVEVKKTRADETQAGGEEPSEKGKKTVTTE-------------------------------------------ASSLPESAPSANRFASSTTEG--NAS*GGNRHAGCNFHALTNDF 261 KE+IVEVKKTRA+ET AGGEEP E GKKT T E SSLPESAPSA+ ASSTTEG N+S GG+RHAGCNF AL F Sbjct: 14 KEDIVEVKKTRAEETLAGGEEPFENGKKTATAEPADSPSPILPKTSPSKEDGSASPTATSVDASALGAVTTTTPQEGSSLPESAPSADGSASSTTEGQGNSSRGGDRHAGCNFGALQQRF 133 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9946.21593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9946.21593.1 >prot_Ecto-sp13_S_contig9946.21593.1 ID=prot_Ecto-sp13_S_contig9946.21593.1|Name=mRNA_Ecto-sp13_S_contig9946.21593.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp DAEKCSPSDATEKENIVEVKKTRADETQAGGEEPSEKGKKTVTTEASSLPback to top mRNA from alignment at Ecto-sp13_S_contig9946:1892..2805+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9946.21593.1 ID=mRNA_Ecto-sp13_S_contig9946.21593.1|Name=mRNA_Ecto-sp13_S_contig9946.21593.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=914bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9946:1892..2805+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9946:1892..2805+ >mRNA_Ecto-sp13_S_contig9946.21593.1 ID=mRNA_Ecto-sp13_S_contig9946.21593.1|Name=mRNA_Ecto-sp13_S_contig9946.21593.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9946:1892..2805+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |