mRNA_Ecto-sp13_S_contig994.21590.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig994.21590.1 vs. uniprot
Match: D7FZ49_ECTSI (NAD-dependent epimerase/dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ49_ECTSI) HSP 1 Score: 485 bits (1249), Expect = 6.060e-169 Identity = 262/304 (86.18%), Postives = 267/304 (87.83%), Query Frame = 1 Query: 106 MQKFVLSGGLGLLGQRVLQHIVSSGHGCVRVMIVDTAPVQAAKSSGPPTAASGITXXXXXXXXXXGEVLGSSTARGA------------VSVVRGDLSCSDVAAAIKSFAGGDDGGGDHAET-ASSTLSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQVTDETKLLPQAMMNLTQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSHDLRHACVGLSSAVDGLIRLHDASEADFGPRDRSV 978 MQKFVLSGGLGLLGQR+LQHIVSSGHGCVRVMIVDTAP+QAAKS GPPTAA GIT EVLGSSTARGA VSVVRGDLS SDVAAAIKSFA GDDGGGDHAET +SSTLSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQVTDETKLLPQ STYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVS DLRHACVGL SAVDGLIRLHDASEADFGPRDR++ Sbjct: 1 MQKFVLSGGLGLLGQRILQHIVSSGHGCVRVMIVDTAPLQAAKSGGPPTAAPGITGDPAVGNGAKCEVLGSSTARGAAAPIADDSSTGAVSVVRGDLSSSDVAAAIKSFAVGDDGGGDHAETTSSSTLSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQVTDETKLLPQ-------STYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLCSAVDGLIRLHDASEADFGPRDRAI 297
BLAST of mRNA_Ecto-sp13_S_contig994.21590.1 vs. uniprot
Match: A0A6J4K8H2_9BACT (Epimerase domain-containing protein n=1 Tax=uncultured Armatimonadetes bacterium TaxID=157466 RepID=A0A6J4K8H2_9BACT) HSP 1 Score: 177 bits (449), Expect = 7.610e-49 Identity = 96/180 (53.33%), Postives = 120/180 (66.67%), Query Frame = 1 Query: 451 SVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGG----EQVTDETKLLPQAMMNLTQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSHDLRHACVGLSSAVDGLIRLHDASEADFGPRDRSV 978 S+FHLAS++SG+ EE F +ALRVN+DG R+L + R++GGR R VFASSIA FGG E TD+TKL PQ +TYGMTKA EL++ND TRKGF DGR ARLPTV++RPG PN AA+G S + + L+G PV D RH G + VD LI +HD A G RDR++ Sbjct: 89 SIFHLASMVSGECEERFDDALRVNLDGGRNLFEAARELGGRTRLVFASSIACFGGDAAMPEPCTDQTKLTPQ-------TTYGMTKAVCELMINDYTRKGFFDGRSARLPTVIIRPGKPNTAASGWASGMFREPLNGATCSLPVRRDQRHPMTGHRTVVDSLIAVHDLPSASIG-RDRAI 260
BLAST of mRNA_Ecto-sp13_S_contig994.21590.1 vs. uniprot
Match: A0A812N7H2_9DINO (DenD protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812N7H2_9DINO) HSP 1 Score: 169 bits (429), Expect = 8.960e-46 Identity = 95/174 (54.60%), Postives = 115/174 (66.09%), Query Frame = 1 Query: 448 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQI--GG--RPRFVFASSIAAFGG--GEQ---VTDETKLLPQAMMNLTQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSHDLRHACVGLSSAVDGLIRLHDA 942 LS+FHLA VMSG E+DF L+VN+DGTR LLD CR GG RP+FVF SS+A FG GEQ V D K++P+ +TYGMTKA ELLVND TRKGF+DGR ARLPTV+VRPG PN A T CFS V + LHG+ + PV+ L H+ + + L+ LHDA Sbjct: 85 LSLFHLAGVMSGAAEKDFDLGLKVNLDGTRHLLDACRARTEGGAARPKFVFTSSLAVFGETYGEQGRAVGDTDKIVPK-------NTYGMTKAVCELLVNDYTRKGFLDGRTARLPTVIVRPGRPNAATTSCFSGVVREPLHGEDAVLPVARTLPHSVTSTRALISNLVILHDA 251
BLAST of mRNA_Ecto-sp13_S_contig994.21590.1 vs. uniprot
Match: A0A2S6UCI5_9PROT (Putative epimerase/dehydratase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6UCI5_9PROT) HSP 1 Score: 168 bits (425), Expect = 1.440e-45 Identity = 101/228 (44.30%), Postives = 133/228 (58.33%), Query Frame = 1 Query: 448 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGG---EQVTDETKLLPQAMMNLTQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSHDLRHACVGLSSAVDGLIRLHDASEADFGPRDRSV------HAYTSLYDHFRRIP-KGSILLRAVVP----CVKKRCRDWPVA 1089 + VFHLASV+S GE+DF A+RVN DG R +L+ R G PR V ASS+A FGG E VT+ T+++PQ +TYGMTKA EL++ND TRKGF+DGR ARLPTV++RPG PN AA+G S V + L GQ ++ PV+ D R +G SA+ GL L DA G DR V +A T + R+ + I V P ++ + WP+A Sbjct: 70 IGVFHLASVVSAGGEQDFDLAMRVNFDGGRHILEALRARKGTPRIVLASSLAVFGGPDMPEAVTEMTRVVPQ-------TTYGMTKAIGELMINDYTRKGFIDGRAARLPTVIIRPGAPNAAASGFASGVFREPLSGQDYVLPVAMDTRMMVIGARSAIAGLTGLMDADGEGLGA-DRVVNLPNNAYAVTDMIAALERVAAENGITFGPVTPKPDPAIEAIVKSWPLA 289
BLAST of mRNA_Ecto-sp13_S_contig994.21590.1 vs. uniprot
Match: A0A2E6QK31_9PROT (NAD-dependent epimerase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QK31_9PROT) HSP 1 Score: 168 bits (425), Expect = 1.680e-45 Identity = 97/225 (43.11%), Postives = 134/225 (59.56%), Query Frame = 1 Query: 448 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGG---EQVTDETKLLPQAMMNLTQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSHDLRHACVGLSSAVDGLIRLHDASEADFGPRDRSVH------AYTSLYDHFRRI----PKGSILLRAVVPCVKKRCRDWP 1083 +SVFHLASV+SG GE+DF A+RVN+DG+R++ + CR+ G PR VFAS++A FGG + V D TK +PQ +TYGMTKA EL++ND TRKGF DGR ARLPTV++RPG PN A +G S + + L+G ++ + R + + AV+G I LH+A G DR+V + D +R+ P G+I + P V+ C WP Sbjct: 78 ISVFHLASVVSGGGEKDFDLAMRVNLDGSRAVFEACRKRGSTPRMVFASTLATFGGSAMPKTVGDTTKQVPQ-------TTYGMTKAACELMINDYTRKGFFDGRSARLPTVIIRPGKPNLALSGFASGIFREPLNGIDYVCAAGLETRMPVISVRMAVEGFIALHEAPGDAIG-EDRAVGLPSLSVTVAEMIDSLQRVAGDRPLGAIKVEPD-PLVESVCSTWP 293
BLAST of mRNA_Ecto-sp13_S_contig994.21590.1 vs. uniprot
Match: A0A4D9D647_9STRA (Epimerase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D647_9STRA) HSP 1 Score: 168 bits (425), Expect = 4.720e-45 Identity = 96/206 (46.60%), Postives = 128/206 (62.14%), Query Frame = 1 Query: 448 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCR------QIGGRP-RFVFASSIAAFGGGEQVTDETKLLPQAMMNLTQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSHDLRHACVGLSSAVDGLIRLHDASEADFGPRDRSVH------AYTSLYDHFRRIPKG 1026 +++FHLASVMSG+GEE+F + + VN+DGT++LL+ R ++G +P RFVF SS AAFG +V+DETKL PQ STYGMTKA EL+VND TRKG+VDGR RLPTV+VRPG N A+TGCFS+V + +L G ++ P H + + GL+ L + G DRSV+ L H R+I +G Sbjct: 101 VTIFHLASVMSGEGEEEFDKCVAVNLDGTQNLLEKARALHASGRVGEKPVRFVFPSSFAAFGPHPEVSDETKLTPQ-------STYGMTKAVGELMVNDYTRKGWVDGRTGRLPTVIVRPGNKNGASTGCFSAVVRELLMGHDYVIPYDPRQTHPVISTRRTIKGLLALAEVEGESLGG-DRSVNLPALQTTMEELLFHTRQIAQG 298
BLAST of mRNA_Ecto-sp13_S_contig994.21590.1 vs. uniprot
Match: A0A437QH10_9PROT (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Hwanghaeella grinnelliae TaxID=2500179 RepID=A0A437QH10_9PROT) HSP 1 Score: 166 bits (421), Expect = 7.210e-45 Identity = 98/226 (43.36%), Postives = 130/226 (57.52%), Query Frame = 1 Query: 448 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGG---EQVTDETKLLPQAMMNLTQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSHDLRHACVGLSSAVDGLIRLHDASEADFGPRDRSVHAYTS-----LYDHFRRIPKGSILLRAVV---PCVKKRCRDWPVAG 1092 + VFHLASV+SG GE+DF A+RVN+DG R +L+ CR +G PR +F SSIA FGG + V D K PQ +TYGMTKA EL++ND TRKGF+DGR ARLPTV++RPG PN AA+ FS + + L G PV D+RH +G + VDG++ L++A G TS L D R+ L + V P ++ ++WP A Sbjct: 80 IGVFHLASVVSGGGEKDFDLAMRVNLDGGRYVLEACRALGSAPRVLFTSSIATFGGAAMPDVVGDLVKQTPQ-------TTYGMTKAVLELMINDYTRKGFLDGRSARLPTVIIRPGKPNAAASSFFSGMFREPLAGVECKIPVPPDVRHPVIGYRTVVDGILALYEADSDAIGDDRAFTLPSTSATVAELMDALDRVAGDRPLGKRTVEPDPFIQDIVKNWPRAA 298
BLAST of mRNA_Ecto-sp13_S_contig994.21590.1 vs. uniprot
Match: A0A800A6L8_9PROT (NAD-dependent epimerase/dehydratase family protein (Fragment) n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A800A6L8_9PROT) HSP 1 Score: 163 bits (413), Expect = 9.580e-45 Identity = 89/174 (51.15%), Postives = 112/174 (64.37%), Query Frame = 1 Query: 448 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGG---EQVTDETKLLPQAMMNLTQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSHDLRHACVGLSSAVDGLIRLHDASEADFG 960 + VFHLASV+S GE+DF A+RVN DG R +L+ R G PR V ASS+A FGG E VT+ T+++PQ +TYGMTKA EL++ND TRKGF+DGR ARLPTV++RPG PN AA+G S V + L GQ ++ PV D R +G SA+ GL L DA G Sbjct: 70 IGVFHLASVVSAGGEQDFDLAMRVNFDGGRHILEALRARKGTPRIVLASSLAVFGGPDMPEAVTEMTRVVPQ-------TTYGMTKAIGELMINDYTRKGFIDGRAARLPTVIIRPGAPNAAASGFASGVFREPLSGQDYVLPVVMDTRMMVIGARSAIAGLTGLMDADGEGLG 236
BLAST of mRNA_Ecto-sp13_S_contig994.21590.1 vs. uniprot
Match: A0A829Y6H7_9GAMM (Epimerase domain-containing protein n=3 Tax=Steroidobacter TaxID=469322 RepID=A0A829Y6H7_9GAMM) HSP 1 Score: 166 bits (419), Expect = 1.350e-44 Identity = 96/224 (42.86%), Postives = 132/224 (58.93%), Query Frame = 1 Query: 448 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGE---QVTDETKLLPQAMMNLTQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSHDLRHACVGLSSAVDGLIRLHDASEADFGPRDRSVHAYT------SLYDHFRRIPKG---SILLRAVVPCVKKRCRDWP 1083 ++VFHLASV+S GE+DF A+RVN+DG R +LD + +G RPR+VF SS+A +GG +V D T+ +PQ +TYGMTKA ELLVND TRKGF+DGR ARL V+VRPG PN AA+G S V + L+G+ ++ PV + A G + ++GL+ LH + G DRSV+ T + + RR+ + + P V K WP Sbjct: 79 IAVFHLASVVSAGGEQDFELAMRVNLDGHRYVLDALKALGSRPRYVFTSSLAVYGGDSALREVDDPTRHIPQ-------TTYGMTKAIGELLVNDYTRKGFIDGRSARLGFVIVRPGAPNRAASGFASGVLREPLNGEDYVCPVPFTTKVAATGYRTVIEGLLALHAVDGSKLGA-DRSVNLRTRTVTVGEMIESLRRVARDRKLGAISEQPDPFVMKVISAWP 294
BLAST of mRNA_Ecto-sp13_S_contig994.21590.1 vs. uniprot
Match: A0A7S3Y5M2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5M2_HETAK) HSP 1 Score: 162 bits (410), Expect = 6.710e-44 Identity = 113/281 (40.21%), Postives = 151/281 (53.74%), Query Frame = 1 Query: 118 VLSGGLGLLGQRVLQHIVSSGHGCVRVMIVDTAPVQAAKSSGPPTAASGITXXXXXXXXXXGEVLGSSTARGAVSV--VRGDLSCSDVAAAIKSFAGGDDGGGDHAETASSTLSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQVTDETKLLPQAMMNLTQSTYGMTKACAELLVNDCTRKGF--VDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSHDLRHACVGLSSAVDGLIRLHDASE 948 +++GG GLLG R+ + I+S R M+ + + G LGS ++ +SV V GD+ CSDV+ + D + + LSVFHLAS+MSG+GEE E VN++GTR LL CR+ +F+FASSIAA G T LL +A +STYG TKA AELLV D R+ VDGR+AR+PTV VRPGPPN A+T FS+V KA+ GQ F SP+ DL+H + +A+ I+LHD E Sbjct: 5 LITGGKGLLGSRLCREIISK-----RSMLAADGVISPVEK----------IILWDRAVDAGGGGLGSCRSKDGISVQEVHGDI-CSDVSVSTLF---------DQSISDQMPLSVFHLASMMSGEGEEKADECFEVNVNGTRRLLGACRRRAAPTKFLFASSIAAAG-------PTPLLSRATRPRPESTYGTTKAMAELLVVDHGRRAAWGVDGRVARVPTVAVRPGPPNAASTAAFSNVVKALAQGQDFSSPLPLDLKHPLISYKNAISCFIQLHDLEE 253 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig994.21590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig994.21590.1 >prot_Ecto-sp13_S_contig994.21590.1 ID=prot_Ecto-sp13_S_contig994.21590.1|Name=mRNA_Ecto-sp13_S_contig994.21590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=378bp CTRSRASPVTQATALSSDEAIQRNIYAGVGVSSSIMQKFVLSGGLGLLGQback to top mRNA from alignment at Ecto-sp13_S_contig994:14630..19707- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig994.21590.1 ID=mRNA_Ecto-sp13_S_contig994.21590.1|Name=mRNA_Ecto-sp13_S_contig994.21590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5078bp|location=Sequence derived from alignment at Ecto-sp13_S_contig994:14630..19707- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig994:14630..19707- >mRNA_Ecto-sp13_S_contig994.21590.1 ID=mRNA_Ecto-sp13_S_contig994.21590.1|Name=mRNA_Ecto-sp13_S_contig994.21590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1134bp|location=Sequence derived from alignment at Ecto-sp13_S_contig994:14630..19707- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |