Homology
BLAST of mRNA_Ecto-sp13_S_contig994.21587.1 vs. uniprot
Match:
D7FZ51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ51_ECTSI)
HSP 1 Score: 493 bits (1268), Expect = 9.880e-170
Identity = 363/445 (81.57%), Postives = 376/445 (84.49%), Query Frame = 1
Query: 1 PDNWQEDTRFDGPEHWGMEEQWKSLFPKTGFETKSSGGSGDSSRDKDGGRTRAKRTSKATMDMMDMTAEGDDDTVTCSLQSGDDTDHFGNFQQPSRAARRTVPETAPEDPEEEMPLPSYRRPKAKTTATSSSSISTSFVGKAPFDEDEEPTTGQRRWRIHPRSTDPASSSRAGSRARDSVLLPSSSEEXXE--FDESEANITGHERNNSRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCSPXXXXXXSPYGDDSPSRQRHDEEIESSGSESCGGLSNSDFDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRTNGGGTK-GKGRVVREGGRRRKGSSSDSRMGNNTSLSPIPGSAQGARARSAPSGSKKARKVVRAQGNERGWIAKGGGSXXXXXXXGRARNPVLSFQGSQISMRKNNERSLTQSKINFPVLL 1326
PDNWQEDTRFDGPEHWG+E++WKSLFPKTGF+TKS GG D+SRDKDGGR+RAK T AT+DM TAEG DDTVTCSLQSGDD HF NF QPSRAARRTVPETAPEDPEEEM +PSYRRP AKTTATS SSI+TS +GKAP EDEEPTTGQRRWRI PRST+PASSSRAGSRARDSVLLPSSSE XX FDESEANITGHERNNSR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CSP XXXX PYGDDSPSRQR +EEIESSGSESCGGLSNSDFDG XXXXXXXXXXXXXXXXXXXXXX GKGRVVR SRMGNNTS SPIPGSAQGARARSAPSGSKKARKVVRAQGNE GWIAKGGGSXXXXXX GR RNPVLSFQGSQISMRKNNERSLTQSKINFPV+L
Sbjct: 7 PDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKSVGGIVDTSRDKDGGRSRAKGTRNATVDM---TAEGGDDTVTCSLQSGDD--HFANFNQPSRAARRTVPETAPEDPEEEMRIPSYRRPNAKTTATSGSSINTSSIGKAPLYEDEEPTTGQRRWRIQPRSTEPASSSRAGSRARDSVLLPSSSEXXXXXXFDESEANITGHERNNSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSPGXXXXAFPYGDDSPSRQRREEEIESSGSESCGGLSNSDFDGSEGEGRKPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGRVVRXXXXXXXXXXXHSRMGNNTSSSPIPGSAQGARARSAPSGSKKARKVVRAQGNEHGWIAKGGGSXXXXXXGGRVRNPVLSFQGSQISMRKNNERSLTQSKINFPVVL 446
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig994.21587.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 9.88e-170 / Id = 81.57 Sequence D7FZ51_ECTSI
Match Name E-value Identity Description
D7FZ51_ECTSI 9.880e-170 81.57 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 1326 Hectar predicted targeting category mitochondrion Exons 2 Cds size 858
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681464254.339087-UTR-Ecto-sp13_S_contig994:3529..3783 1681464254.339087-UTR-Ecto-sp13_S_contig994:3529..3783 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig994 3530..3783 - 1681464254.371424-UTR-Ecto-sp13_S_contig994:5927..6141 1681464254.371424-UTR-Ecto-sp13_S_contig994:5927..6141 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig994 5928..6141 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681464254.3502634-CDS-Ecto-sp13_S_contig994:3783..4329 1681464254.3502634-CDS-Ecto-sp13_S_contig994:3783..4329 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig994 3784..4329 - 1681464254.3610194-CDS-Ecto-sp13_S_contig994:5615..5927 1681464254.3610194-CDS-Ecto-sp13_S_contig994:5615..5927 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig994 5616..5927 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig994.21587.1
>prot_Ecto-sp13_S_contig994.21587.1 ID=prot_Ecto-sp13_S_contig994.21587.1|Name=mRNA_Ecto-sp13_S_contig994.21587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=286bp
MTLLHVACRAATIPIISATSSSQVVRLEGQFPRRRQRTPKRRCHFLLTGD back to top mRNA from alignment at Ecto-sp13_S_contig994:3530..6141-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig994.21587.1 ID=mRNA_Ecto-sp13_S_contig994.21587.1|Name=mRNA_Ecto-sp13_S_contig994.21587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig994:3530..6141- (Ectocarpus species13 EcNAP12_S_4_19m)CCCGACAATTGGCAAGAAGACACACGCTTCGACGGCCCAGAGCACTGGGG
CATGGAAGAACAGTGGAAGAGCTTATTCCCCAAGACTGGCTTCGAGACGA
AGAGCAGCGGTGGTAGTGGTGACAGTAGTAGGGACAAGGATGGCGGCAGG
ACTCGGGCAAAGAGGACAAGCAAGGCGACGATGGACATGATGGACATGAC
CGCCGAGGGAGACG ATGACACTGTTACATGTAGCCTGCAGAGCGGCGACG
ATACCGATCATTTCGGCAACTTCCAGCAGCCAAGTCGTGCGGCTCGAAGG
ACAGTTCCCGAGACGGCGCCAGAGGACCCCGAAGAGGAGATGCCACTTCC
TTCTTACAGGAGACCGAAAGCGAAAACAACGGCAACTAGCAGCAGCAGCA
TCAGTACAAGTTTTGTCGGTAAGGCACCCTTCGACGAGGACGAGGAGCCG
ACGACGGGGCAAAGAAGGTGGAGAATCCACCCGAGAAGCACGGACCCAGC
ATCGAGCTCCCGTGCTGGAAGCAGGG GTGAGTCGAGAGACACGGGAAAGG
TATTCATAGCTTGGTGTGGTGATGCTTGCCATGGTTGTCATGCTTGTCTG
CTATGAACGGTGGAGCGGGTCAACGTACCGTCCCACGTGAAACATGATTC
CATAGTGGTACATGTCCATAGCATGGGATTCTCTCAAACGGCCTACTTTT
CGTACACCGAGGGGCGGAGGCAACTTTCGCGTTAGCGAAGGGGTGTCAAT
CAAGGCGAATTGGTTCGTTTCGCGGAGATTTCGGGATATTCATCGATGTT
TTACCACAACCTCCTCCTTGTGGTAATACACAGCTGTGCTCCCCACACAC
ACACAGCCAAGTAGACAACTGTGACATTTACCCGACGAGCAAGTGAACGG
CAACGATTGGCCTTGGGGCCTTGGTAAGGGTATTAGGTGGCGTTATGGAT
GGAGAGATTCCATGGCAAGCAACTCGCGGTACCACTCAGCCGATCGAGGC
GTTTGTACAAGAAGTGGGATTGCGCGTTTTATTCGATTGATTGGGTGTGT
CTGTTTTCGCAAGGGTCCCTCCATATGGAAGCATTGGAACACCCCTATGT
TACGTGTCTATCTTGGTCGCCGGGGGGGAGGGGGGGGGGGGAGGCTTTAG
GCGTCCCCGGGGGAGACATTTTGACATATTCCACGGGGTTTCGACATTTT
TCGGGCGCTTTTTTCAGCGCACTCGCGTCGGATCCCACACAGAGCTAGTG
GAAATTATGGAAACACCCCAAGAATGCGCGTAATTCTTGGTCGCGACGAG
GGGGTCTAGTGCATGGTGTAGAAAATAGTAAAACGACACGAAAGCCTAGA
ATTTTATGGGTTGTAGAACGCGGCACGAAAGTCTGATCAATGAAGAGAGT
GTGATATGGACACACTAACTACTTTACGAGAGACTGCTGCAAGTGAGCAG
CCTAAATGTGGCTATCCTGCGTGTCAATCTTGGCCCGGGGGAGGTGGGGG
GGGGTAGGGTGTTCCACGGTTTCCACATGGAGGGACCCTTGGTTTTCGGA
CCCTCTTCTTTCATCACTGCACTCTCGGTACGGAAATGTGGAAACGTGGG
TGCCCGGTGCGTCAACCAACATTATCCTTTCCATGAAAGCTTCACGGCAA
TGCCTGCCCACGACCACAATTTTTCGAGGTTGATATTTTTTCCCCCCTCG
CCTGCTTCCTCGCACATGTCTCCCTGTGAAACACAACCTCTCCTGCGTTT
TCTTATTTTTTCTCCTTACCCCCGCGACATTTTCGCCGGATCCAAAACCC
GCCTTTGCGAAGCTCGTGATTCGGTGCTACTGCCGTCTTCATCCGAGGAA
GAGGAGGAGTTCGACGAAAGCGAGGCCAACATCACGGGCCACGAACGGAA
CAACTCCCGTTCACCCATCCCCCGTCCCCGCGAACACAAAAACGGCGGGG
GCGCCGATGAATCGCCCCCGCACCCCCTCCCCCGAAACAACGATAAGAAG
GGGAAAGGCAGTACGTGCTCTCCAGGGGGTGGGGCCGCAGCCTCCCCGTA
TGGCGACGACTCCCCCTCGAGGCAAAGACACGACGAGGAGATTGAGTCGT
CTGGATCGGAATCCTGCGGCGGCTTGTCGAACTCCGACTTTGACGGCAGC
GAGGGCGAGGGTCGCAAGCCATCCTCATCCTCCCCGCGGCTGTCGTCTTG
TTCTCTTTCGCGCCGAAGGGAAGGGGACGGGAAAGGGGAAGGAACGCGGC
GTACCAACGGGGGCGGAACAAAAGGGAAAGGGCGTGTCGTTCGCGAGGGT
GGTCGGAGGCGAAAGGGATCGTCCAGCGACAGCAGGATGGGCAACAACAC
GTCATTGA GCCCGATCCCGGGTTCCGCGCAAGGGGCGCGGGCTCGCTCGG
CACCATCTGGCAGCAAGAAGGCTCGCAAGGTTGTGAGAGCCCAAGGGAAC
GAGCGAGGCTGGATAGCCAAGGGTGGTGGGAGCGGCGGTGGCGGTAGCAG
TGGAGGGCGAGCGAGAAACCCGGTGCTTTCGTTTCAGGGTTCTCAGATTT
CGATGCGAAAGAACAACGAAAGAAGCCTAACGCAGTCCAAAATCAACTTT
CCCGTCCTATTG back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig994:3530..6141-
>mRNA_Ecto-sp13_S_contig994.21587.1 ID=mRNA_Ecto-sp13_S_contig994.21587.1|Name=mRNA_Ecto-sp13_S_contig994.21587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=858bp|location=Sequence derived from alignment at Ecto-sp13_S_contig994:3530..6141- (Ectocarpus species13 EcNAP12_S_4_19m) back to top