mRNA_Ecto-sp13_S_contig9936.21583.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9936.21583.1 vs. uniprot
Match: A0A6H5KYK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK9_9PHAE) HSP 1 Score: 1321 bits (3418), Expect = 0.000e+0 Identity = 774/853 (90.74%), Postives = 788/853 (92.38%), Query Frame = 1 Query: 271 TPVSETPAVAPXPVIPTLLPVATPPEPPASSDSLQPVVAPPTASGTVTNAPVNAAQPVAPGTXXXXXXXXXXXXXXXXXXXXATAPTALAPSAEPVIGVQPSVPPVAAPSATIGQGPTVDPIAVVPSPPXXXXXXXXXXXXXXXXXXXXTITTSPAAVPGAPTAEPALAPVVPLLPGQTAAPAARDLPIAGIPTPAPIAGGTARPAAPIVAPVVPGAPTLATTRAPVDPADIPKTPAPVLPPDXXXXXXXXATQPXXXXXXXXXXXXXXXXXVPVATPAPSTNAPSVSGVLTMTEAAVEQCEDGCEVGLANAFDVQPYLVRCSCPEVEVTRRSLGGWLTEGWNSTSVSPTEGSYYLRRRLEETSDAGFVVTVPGTTTSGLIQSINYFQNNFDRVSEALSVDSEDVQFSSLQFSATSFSPITEEASNSDVQLVVNPPESDASAAAVGMFVLFLVALLLGTCGCLWAILGFCRRQRMRAKEASRKDFFSSKMMGSTAGSVSGASGTGSGDEGEYYHNFNPIRTRGMLAPHGKAIAPASIKAVSPTPSQTKQTELFTNLMEATPPRGDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQASFYQAGAATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKCPQWHEGNVQLMGVYLAITFLEYGLNSQTLGVDGQSTTLDWVHGLQPDDLEKFLAEKKDQRMRVLCLDLEPTGIPQQALRDNDEVVRAANSLQSESSPTSSAQMEPPFHGADNEVSGS 2829 TPVSET X IPTLLPVATPPEPPA+SDSLQPVVAPPTASG +TNAPV+AAQPVAPGT XXXXXXXXXX ATAPTALAPSAEPVIGVQPSVPPVAAPSATIGQ PTVDPIAVVPSPPXXXXXXXXXXXXXXXXXXXXTITTSPAAVPGAPTAEPALAP AAPAARDLPIAGIPTP PIAGGTARPAAPIVAPVVPGAPTLA+TRAPVDPADIPKTPAPVLPPD X XXATQP XXXXXXXXXXXXXXXX PSTNAPSVSGVLTMTEAAVEQCEDGCEVGLANAFDVQPYLVRCSCPEVE TRRSLGGWLTE WNSTSVSPTEG YYLRRRL+ETSDAGFVVTVPG TTSGLIQSINYFQNN+ RVSEAL VDSEDVQFSSLQFSATS SPITEEASNSDVQLVVNPP SDASAAAVGMFVLFLVALLLGTCGCLWAILGFCR QR RAKEASR+DFFSSK+MGSTAGSVSGASGTGSGDEGEYYHNFNPIRT GMLAPHGKAIAPASIKAVSPTPSQTKQTELFTNLMEATPPRGDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQA+ ++ AATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKCPQWHEGNVQLMGVYLAITFLEYGLNSQTLG DGQSTTLDWVHGLQPDDLEKFLAEKK+QRMRVLCLDLEPTGIPQQALRD+DEVV AANSLQSESSP SS QME PF GAD+E S Sbjct: 1106 TPVSETXXXXXXXXIPTLLPVATPPEPPAASDSLQPVVAPPTASGALTNAPVDAAQPVAPGTTXXXXXXXXXXP--------ATAPTALAPSAEPVIGVQPSVPPVAAPSATIGQEPTVDPIAVVPSPPXXXXXXXXXXXXXXXXXXXXTITTSPAAVPGAPTAEPALAPXXXXXXXXXAAPAARDLPIAGIPTPVPIAGGTARPAAPIVAPVVPGAPTLASTRAPVDPADIPKTPAPVLPPDQLPXTSXXATQPTXXXXXXXXXXXXXXXXXXXXXXXPSTNAPSVSGVLTMTEAAVEQCEDGCEVGLANAFDVQPYLVRCSCPEVEFTRRSLGGWLTEEWNSTSVSPTEGFYYLRRRLDETSDAGFVVTVPGPTTSGLIQSINYFQNNYGRVSEALGVDSEDVQFSSLQFSATSISPITEEASNSDVQLVVNPPASDASAAAVGMFVLFLVALLLGTCGCLWAILGFCR-QRRRAKEASRQDFFSSKLMGSTAGSVSGASGTGSGDEGEYYHNFNPIRTGGMLAPHGKAIAPASIKAVSPTPSQTKQTELFTNLMEATPPRGDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQAT--RSRAATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKCPQWHEGNVQLMGVYLAITFLEYGLNSQTLGADGQSTTLDWVHGLQPDDLEKFLAEKKEQRMRVLCLDLEPTGIPQQALRDDDEVVGAANSLQSESSPASSTQMELPFQGADDETPSS 1947
BLAST of mRNA_Ecto-sp13_S_contig9936.21583.1 vs. uniprot
Match: D8LG77_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG77_ECTSI) HSP 1 Score: 1217 bits (3150), Expect = 0.000e+0 Identity = 722/818 (88.26%), Postives = 733/818 (89.61%), Query Frame = 1 Query: 376 PVVAPPTASGTVTNAPVNAAQPVAPGTXXXXXXXXXXXXXXXXXXXXATAPTALAPSAEPVIGVQPSVPPVAAPSATIGQGPTVDPIAVVPSPPXXXXXXXXXXXXXXXXXXXXTITTSPAAVPGAPTAEPALAPVVPLLPGQTAAPAARDLPIAGIPTPAPIAGGTARPAAPIVAPVVPGAPTLATTRAPVDPADIPKTPAPVLPPDXXXXXXXXATQPXXXXXXXXXXXXXXXXXVPVATPAPSTNAPSVSGVLTMTEAAVEQCEDGCEVGLANAFDVQPYLVRCSCPEVEVTRRSLGGWLTEGWNSTSVSPTEGSYYLRRRLEETSDAGFVVTVPGTTTSGLIQSINYFQNNFDRVSEALSVDSEDVQFSSLQFSATSFSPITEEASNSDVQLVVNPPESDASAAAVGMFVLFLVALLLGTCGCLWAILGFCRRQRMRAKEASRKDFFSSKMMGSTAGSVSGASGTGSGDEGEYYHNFNPIRTRGMLAPHGKAIAPASIKAVSPTPSQTKQTELFTNLMEATPPRGDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQASFYQAGAATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKCPQWHEGNVQLMGVYLAITFLEYGLNSQTLGVDGQSTTLDWVHGLQPDDLEKFLAEKKDQRMRVLCLDLEPTGIPQQALRDNDEVVRAANSLQSESSPTSSAQMEPPFHGADNEVSGS 2829 PVVAP TAS VTNAPV+AAQPVAPGT XXXXX X ATAPTAL SA IGQ PTVDPIAVVPSPPXXXXXXXXXXXXXXXXXX TIT SPAAVPGAPTAEPALAP TAAPAARDLPI GIPTPAPIAGGTARPAAPIVAPVVPGAPTL+ T APVDPADIPKTPAPVLP XXXXXXXX XXXXXXXXXXXXXXXXX ATPAPSTNAPSVSG LTM+ AA+EQCEDGCEVGLANAFDVQPYLVRCSCPEVE++RRSLGGWLTEGWNST+VSPTEGSYYLRRRLEETSDAGFVVTVPGTTTSGLIQSINYFQNNFDRVSEAL VDSE+VQFSSLQFSATSFSPITEEASN+DVQLVVNPP SDASAAAVGMFVLFLVALLLGTCGCLWAILGFCR QRMRAKEASRKDFFSSKMMGS AGSVSGASGTGSGDEGEYYHNFNPIRT GMLAPHGKAIAPASIKAVSPTPSQTKQTELFTNLMEATPPRGDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQA ATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIR KCPQWHEGNVQLMGV LAITFLEYG NSQTLGVD QSTTLDWVHGLQPDDLEKFLAEKKDQRMRVLCLDLEPTGIPQQALRDNDEV+RAANSLQSESSPTSSAQME PF GAD+E S Sbjct: 646 PVVAP-TASAAVTNAPVDAAQPVAPGTIPPXXXXXTVPX--------ATAPTALXXXXXXXXXXXXXXXXXXXXSAAIGQDPTVDPIAVVPSPPXXXXXXXXXXXXXXXXXXTTTITNSPAAVPGAPTAEPALAPXXXXXXXXTAAPAARDLPITGIPTPAPIAGGTARPAAPIVAPVVPGAPTLSGTTAPVDPADIPKTPAPVLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPAPSTNAPSVSGALTMSLAAMEQCEDGCEVGLANAFDVQPYLVRCSCPEVEISRRSLGGWLTEGWNSTTVSPTEGSYYLRRRLEETSDAGFVVTVPGTTTSGLIQSINYFQNNFDRVSEALGVDSENVQFSSLQFSATSFSPITEEASNNDVQLVVNPPASDASAAAVGMFVLFLVALLLGTCGCLWAILGFCR-QRMRAKEASRKDFFSSKMMGSAAGSVSGASGTGSGDEGEYYHNFNPIRTGGMLAPHGKAIAPASIKAVSPTPSQTKQTELFTNLMEATPPRGDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQA-------ATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRGKCPQWHEGNVQLMGVSLAITFLEYGFNSQTLGVDAQSTTLDWVHGLQPDDLEKFLAEKKDQRMRVLCLDLEPTGIPQQALRDNDEVIRAANSLQSESSPTSSAQMELPFQGADDETPSS 1446
BLAST of mRNA_Ecto-sp13_S_contig9936.21583.1 vs. uniprot
Match: D7G150_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G150_ECTSI) HSP 1 Score: 202 bits (515), Expect = 2.710e-52 Identity = 147/349 (42.12%), Postives = 179/349 (51.29%), Query Frame = 1 Query: 898 VAPVVPGAP---------TLATTRAPVDPADIPKTPAPVLPPDXXXXXXXXATQPXXXXXXXXXXXXXXXXXVPVATPAP------------STNAPSVSGVLTMTEAAVEQCEDGCEVGLANAFDVQPYLVRCSCPEVEVTRRSLGGWLTEGWNSTSVSPTEGSYYLRRRLEETSDAGFVVTVPGTTTSGLIQSINYFQNNFDRVSEALSVDSEDVQFSSLQFSATSFSPITEEASNSDVQLVVNPPESDASAAAVGMFVLFLVALLLGTCGCLWAILGFCRRQRMRAKEASRKDFFSSKMMGSTAGSVSGASGTGSGDEGEYYHNFNPIRTRGMLAPHGKAIAPASI 1881 +APVVPG T PVDP D KTPAPVLPP PV T AP S APSVSG + ++E A+ QCE GC GLA AFD+QPY V+C CPEV RRSL L N TSV P+EG+Y RRRL T++ +VVTVPG TT G++QSIN+FQ N+ VS +L V ++V FS+L+F A S S I SN DV L+VNPP S AS A+GMF++ ++ALLLGTC CL A+L FC G+Y + IR RGMLAPH +AI PAS+ Sbjct: 199 MAPVVPGXXXXXXXXXXXTARPANTPVDPVDTFKTPAPVLPP---------------------VLVPTRTPITPVTTAAPLPXXXXXXXXXXSAQAPSVSGFIIVSETALAQCEVGCVEGLAAAFDLQPYRVQCICPEVR--RRSLRSMLANRRNVTSVHPSEGAYLSRRRLT-TAEVPYVVTVPGITTQGMVQSINHFQANYMEVSSSLGVPGDEVVFSTLEFVAASSSHI----SNMDVPLLVNPPASGASTNAIGMFIICILALLLGTCVCLEAVLNFC---------------------------------------GKYCSTYL-IRARGMLAPHHRAIVPASM 479
BLAST of mRNA_Ecto-sp13_S_contig9936.21583.1 vs. uniprot
Match: A0A0G4EB06_VITBC (Methyltransf_11 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EB06_VITBC) HSP 1 Score: 77.0 bits (188), Expect = 9.010e-11 Identity = 57/233 (24.46%), Postives = 106/233 (45.49%), Query Frame = 1 Query: 1963 DPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQASFYQAGAATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKCPQWHEGNVQLMGVYLAITFLEYGLNSQTLGVDGQSTTLDWVHGLQPDDLEKFLAEKKDQRM 2661 DP Y M+G L + + + RL +F +A E+ + +D++ +P IY +L+ ++ LA+ LAP W N+E + AL + ++ FW L G +D +S D++I A IV F G A +++ + + +++ +C +W + +VQL+ V LAIT + T G++ W+ +L+ L +++D +M Sbjct: 336 DP-YEAMMGQL--WTARELEDAERQLVVARLTRDFNRADTESEQESFVDAVKGVPSIYRVLKEMNPVTFPPPLRAKLASLLAPQWKNTEAQQSALRQGLGLEPPSKD--FWLKL-------GQLSDDVSAEDRLIWLADIVPQFTGEPTHDAYVKQMIDVVPLAIDLVKERCQEWSDADVQLVAVDLAIT------DYMTEPPRGRARFYPWLKNFSRGELDDILRKRRDYKM 550 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9936.21583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9936.21583.1 >prot_Ecto-sp13_S_contig9936.21583.1 ID=prot_Ecto-sp13_S_contig9936.21583.1|Name=mRNA_Ecto-sp13_S_contig9936.21583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=945bp APPATGTAQPVTAPTPTATAPPATGTTQPVTAPTPTATAPPATGTTQPVTback to top mRNA from alignment at Ecto-sp13_S_contig9936:77..5836- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9936.21583.1 ID=mRNA_Ecto-sp13_S_contig9936.21583.1|Name=mRNA_Ecto-sp13_S_contig9936.21583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5760bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9936:77..5836- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9936:77..5836- >mRNA_Ecto-sp13_S_contig9936.21583.1 ID=mRNA_Ecto-sp13_S_contig9936.21583.1|Name=mRNA_Ecto-sp13_S_contig9936.21583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2835bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9936:77..5836- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |