mRNA_Ecto-sp13_S_contig9933.21581.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: D7FJH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH1_ECTSI) HSP 1 Score: 362 bits (928), Expect = 1.360e-117 Identity = 181/193 (93.78%), Postives = 189/193 (97.93%), Query Frame = 1 Query: 1 VNATSELIVVAEPEQGEDCDVGGGIPLEISSMPVTTSYVDIPASIFFQGSMRNMTNKYTSLSISLPVTGAHLVVVLLESGGTLGTLDVASIPGEPYAPNSIVSSKPPTSMVQHSSANVSFSCRDFYSNDITFGYGDDAFQAWMSTSSQQLSERVSDVGNGSYAVELSTHNESETTLFFVQRDKLNIPGSPFEV 579 VNATS+LIVVAEPEQGEDCDVG GIPLEISSMPVTTSYV+IPASIFFQGSM+N+TNKYTSLSI+LPVTGAHLVVVLLESGGTLGTLD+ SIPGEPYAPNS+VSSKPPTSMVQHSSANVSFSCRDFYSNDITFGYGDDAFQAWMSTSSQQ+ ERVSDVGNGSY VELSTHNESETTLFFVQRDKLNIPGSPFEV Sbjct: 283 VNATSDLIVVAEPEQGEDCDVGDGIPLEISSMPVTTSYVNIPASIFFQGSMKNVTNKYTSLSINLPVTGAHLVVVLLESGGTLGTLDIVSIPGEPYAPNSVVSSKPPTSMVQHSSANVSFSCRDFYSNDITFGYGDDAFQAWMSTSSQQIPERVSDVGNGSYVVELSTHNESETTLFFVQRDKLNIPGSPFEV 475
BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: A0A6H5JUL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL9_9PHAE) HSP 1 Score: 346 bits (887), Expect = 1.930e-111 Identity = 173/192 (90.10%), Postives = 181/192 (94.27%), Query Frame = 1 Query: 1 VNATSELIVVAEPEQGEDCDVGGGIPLEISSMPVTTSYVDIPASIFFQGSMRNMTNKYTSLSISLPVTGAHLVVVLLESGGTLGTLDVASIPGEPYAPNSIVSSKPPTSMVQHSSANVSFSCRDFYSNDITFGYGDDAFQAWMSTSSQQLSERVSDVGNGSYAVELSTHNESETTLFFVQRDKLNIPGSPFE 576 VNATS+LIVVAEPEQGEDCDVGGGIPLEISSMPVTTSYVDIPASIFFQGSM+NMTNKYTSLSI LPVTGAH VVVLLESGGTLGTLD+ SIPGEPYAP+S+VS KPPTSM QHSSANVSFSCRDFYSNDIT GYGDDAFQAWMSTSSQ++ ERV+DVGNGSY VELS HNESE LFFVQRDKLNIPGSPFE Sbjct: 285 VNATSDLIVVAEPEQGEDCDVGGGIPLEISSMPVTTSYVDIPASIFFQGSMKNMTNKYTSLSIRLPVTGAHSVVVLLESGGTLGTLDIVSIPGEPYAPSSVVSLKPPTSMAQHSSANVSFSCRDFYSNDITVGYGDDAFQAWMSTSSQEVPERVNDVGNGSYVVELSAHNESEAKLFFVQRDKLNIPGSPFE 476
BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: D8LI90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI90_ECTSI) HSP 1 Score: 254 bits (650), Expect = 9.980e-77 Identity = 136/337 (40.36%), Postives = 193/337 (57.27%), Query Frame = 1 Query: 1 VNATSELIVVAEPEQGEDCDVGGGIPLEISSMPVTTSYVDIPASIFFQGSMRNMTNKYTSLSISLPVTGAHLVVVLLESGGTLGTLDVASIPGEPYAPNSIVSSKPPTSMVQHSSANVSFSCRDFYSNDITFGYGDDAFQAWM---STSSQQLSERVSDVGNGSYAVELSTHNESETTLFFVQRDKLNIPGSPFEVYILAPDQCVIEFLEIDVGECTTNLHRTVVHEWKDGITCEGGLALPGDTRVLCGFIPTRTSLGRAMMGFSAFGAIYAIFFLVWIVKHRETSVVKMGQPFVCQLFLLGCIALNLTAPLYLGEPSTLVCRLRPCVLHTALTFAS 1002 V TS++++ A PEQGE CD+G GI L++ S + + D+ A I+F G N++++ T LS+ TG H + V L SG L ++++ + PYAP V+ +PP+S + SS S + RDFY N IT +GD+AFQAW + V D GNGSY V T ++ TT FV+RD L +PGSPFEVY+ P C + VG+C ++L R V +W C G P + + CG+IP ++ LG ++ +AF +YA L WI + R +VK+ QPFVCQLFL GCI LN+TA +G S C ++P +LH LTF S Sbjct: 91 VTTTSDVLITAIPEQGELCDLGDGIDLQVRSDEFSANIEDVGAWIYFDGRSLNVSHEETRLSLRFAYTGEHFINVYLASGARLASMNITVVAAAPYAPACEVTGRPPSSAPEGSSVVASLTARDFYGNSITEQWGDNAFQAWTYAGGVGDNVSAATVHDTGNGSYRVVSDTLGDAATTFLFVERDALGVPGSPFEVYVFGPANCAVMST---VGDCQSDLWRPVSQQWAARSPCIGQFDDPEHSGIGCGYIPLKSDLGTTIVVCAAFAGLYAAVILWWIRRERWAVIVKLSQPFVCQLFLAGCILLNITAAFLVGVASDPSCVMQPWMLHIGLTFTS 424
BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: D8LI91_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI91_ECTSI) HSP 1 Score: 118 bits (295), Expect = 2.790e-26 Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 1 Query: 1015 MKTYRVHRLFNNQT-LARMSISDRSLVVWVLRLVSVDVMFLTLWLILDGPRASMVYFTQGYAELEKTTC--DPGAAYFGTILWIYKGGLNLFGVVMAAKTWHCADGVGE 1332 MKTYRVHR+FNN++ L+R+SI+DR LV WV++LV+VD +FL LW I+D P+ S + T G E+ C G + F ILW +K LN FGV+MAAKTWHC DGVGE Sbjct: 1 MKTYRVHRIFNNESKLSRISITDRQLVTWVVKLVAVDAVFLLLWAIMDRPQRSDISETVGDIEVTNWKCVGASGTSVFRAILWSWKACLNCFGVIMAAKTWHCEDGVGE 109
BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: A0A6V1PF52_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PF52_HETAK) HSP 1 Score: 103 bits (258), Expect = 5.390e-20 Identity = 67/231 (29.00%), Postives = 109/231 (47.19%), Query Frame = 1 Query: 655 RTVVHEWKDGITCEGGLALPGDTRVLCGFIPTRTSLGRAMMGFSAFGAIYAIFFLVWIVKHRETSVVKMGQPFVCQLFLLGCIALNLTAPLYLGEPSTLVCRLRPCVLHTALTFASSCLYMKTYRVHRLFNNQTLARMSISDRSLVVWVLRLVSVDVMFLTLWLILDGPRASMVYFTQGYAELEKTTCDPGAAYFGTILWIYKGGLNLFGVVMAAKTWHCADGVGEVRHSM 1347 R V W + + CEGG+ LP + C +P ++ GRA+ GA + L +V R T +K QP +F+ +A+ + L LG P+ C R + H A T L++K YRV R+F N+ L R+ ++ +++ ++ L+ VDV L W +L P A T G+ FG++L +Y GL L G ++ +T +D E ++ M Sbjct: 494 RYVQFFWNETVACEGGVKLPSTVLLECDQVPFASATGRAVCAVCTLGAGVGLVLLGAVVALRRTPDIKASQPVFLGIFVGAAVAVTASNVLGLGPPTAATCLGRAWLFHLAFTAMFGALFLKAYRVWRIFGNKNLRRVKVTVAAILRFLGGLLLVDVALLGTWTVLAPPVAETTLLEITNVGAVPTAACRGSPTFGSLLGMYHVGLVLIGAYISYQTRMVSDKFSESKYIM 724
BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: W2Q8N7_PHYPN (G_PROTEIN_RECEP_F3_4 domain-containing protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2Q8N7_PHYPN) HSP 1 Score: 86.7 bits (213), Expect = 2.510e-14 Identity = 64/241 (26.56%), Postives = 114/241 (47.30%), Query Frame = 1 Query: 601 CVIEFLEIDVGECTTNLHRTVVHEW--KDGIT------CEGGLALPGDTRVLCGFIPTRTSLGRAMMGFSAFGAIYAIFFLVWIVKHRETSVVKMGQPFVCQLFLLGCIALNLTAPLYLGEPSTLVCRLRPCVLHTALTFASSCLYMKTYRVHRLFNNQTLARMSISDRSLVVWVLRLVSVDVMFLTLWLILDGPRASMVYFTQGYAEL-----EKTTCDPGAAYFGTILWIYKGGLNLFG 1284 C F DV ECT+ HR V W D + C G ALP + C ++P T+ +A+ + A + + ++V RE +VK Q LLG + + +Y GEPS +VC LRP ++ A T L +K+ RV+R+F + + R+ +S +++ ++ + VD++ L ++ A + + +E+ ++ C ++ F +L+I+K + LFG Sbjct: 556 CDTSFYTYDVSECTSFGHREVTFRWLLPDAMNATFSSECTDGKALPDPVLIDCEYVPYNTAASKAVFVLACLFACVMLGCIGFVVYEREQPIVKRSQYQFLVTMLLGGVLMCYATVIYSGEPSRIVCALRPMLISWAFTLIFGSLVVKSMRVYRVFLSSAMKRVVLSAGTMMKVLVGFLIVDIVILVSRQLVSPSNA--IVKAEAVSEIGGLVVDRVRCASSSSVFVGLLFIWKA-VMLFG 793
BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: A0A6G0S4U8_9STRA (G_PROTEIN_RECEP_F3_4 domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0S4U8_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.660e-13 Identity = 58/246 (23.58%), Postives = 114/246 (46.34%), Query Frame = 1 Query: 598 QCVIEFLEIDVGECTTNLHRTVVHEWK--------DGITCEGGLALPGDTRVLCGFIPTRTSLGRAMMGFSAFGAIYAIFFLVWIVKHRETSVVKMGQPFVCQLFLLGCIALNLTAPLYLGEPSTLVCRLRPCVLHTALTFASSCLYMKTYRVHRLFNNQTLARMSISDRSLVVWVLRLVSV----DVMFLTLWLILDGPRASM--VYFTQGYAELEKTTCDPGAAYFGTILWIYKGGLNLFGVVM 1293 +C F +V +C ++ RTV + W C GG+ LP D ++ C ++PT + A+ S A + + KHR +VK Q + +L + G A Y G+PS L+C +RP ++ T L MK+ RV+R+F ++ R+ ++ + +L+++++ D++ W D P ++ V ++ +++ +C+ + T+L +K L + G+ + Sbjct: 411 ECDSTFYNYNVSQCDSDAQRTVQYFWSLPSAQNLLFSTECSGGVTLPEDVKIDCEYMPTSSPTFAALAVLSVIVASLLLVAAFLVYKHRSAPIVKRSQFEMLELMIFGGFFTTGAAMAYAGQPSRLLCGIRPILVCMGFTTIFGALVMKSLRVYRVFMKSSMKRVKVT----LFRILKMLAIFYVGDLVIFVGWYAADFPEPTVTTVEASEFRGTVDRMSCNSSSFISTTLLIFWKAILLVLGLYL 652
BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: A0A662WV06_9STRA (G_PROTEIN_RECEP_F3_4 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WV06_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 3.090e-13 Identity = 57/253 (22.53%), Postives = 115/253 (45.45%), Query Frame = 1 Query: 580 YILAPDQCVIEFLEIDVGECTTNLHRTVVHEWK-----DGI---TCEGGLALPGDTRVLCGFIPTRTSLGRAMMGFSAFGAIYAIFFLVWIVKHRETSVVKMGQPFVCQLFLLGCIALNLTAPLYLGEPSTLVCRLRPCVLHTALTFASSCLYMKTYRVHRLFNNQTLARMSISDRSLVVWVLRLVSV----DVMFLTLWLILDGPRASMVYFTQG--YAELEKTTCDPGAAYFGTILWIYKGGLNLFGVVMA 1296 +I A C F V EC ++ RTV W+ D + C GG+ LP ++ C ++PT T + + A +V++ R +++ Q + +L L+G A Y G+P+ L+C +RP ++ T L +K+ RV+R+F + R+ ++ + +L+++S+ D+ +W +D P+A++ + +++ +C + F +L +K L G+ ++ Sbjct: 504 WIYAKPTCDASFYTYGVSECDSDAQRTVTFFWQLPNATDALFSAECIGGVKLPASVQIDCDYMPTSTPAFAVVAALATSVAGLIAVAMVFVFIQRNAPIIRRSQFEMLELMLIGGFFTCGAAVTYAGQPTNLLCGIRPVLITLGFTTIFGALVLKSLRVYRVFMRSAMKRVKVT----LFMILKILSIFYVGDIAIFVVWYAVDFPKATIKTENSSVFHGTVDRMSCHSSSFIFSALLIFWKAILLFLGLYLS 752
BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: K3X561_GLOUD (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X561_GLOUD) HSP 1 Score: 76.3 bits (186), Expect = 5.060e-11 Identity = 58/257 (22.57%), Postives = 114/257 (44.36%), Query Frame = 1 Query: 562 GSPFEVYILAPDQCVIEFLEIDVGECTTNLHRTVVHEW--------KDGITCE--GGLALPGDTRVLCGFIPTRTSLGRAMMGFSAFGAIYAIFFLVWIVKHRETSVVKMGQPFVCQLFLLGCIALNLTAPLYLGEPSTLVCRLRPCVLHTALTFASSCLYMKTYRVHRLFNNQTLARMSISDRSLVVWVLRLVSVDVMFLTLWLILDGPRASMVY--FTQGYAELEKTTCDPGAAYFGTILWIYKGGLNLFGVVMA 1296 S + +I C F E +V C + R V + W + C+ LP D V C ++P + + S + +V++ R+ ++K Q + +L + G I + L+A +Y GEP+ ++C RP ++ + T L++K+ RV+R+F ++ R+ IS +V + VD++ + +W D P+ +M + E+E+ C + F +L +K + G+ ++ Sbjct: 504 ASRWSSWISTKPTCDSTFYEYNVSACDSASKRRVHYYWLLADPANATRSLECDLSSTTMLPEDVLVDCEYVPFSSPVFMVCAITSGVLIGVLVLAMVFVFVCRKAPIIKRSQFELLELMIFGGILVCLSAVMYAGEPTNVLCAARPLLVSSGFTTIFGALFVKSLRVYRVFMKSSMKRVKISTLMMVKVLSVFYVVDLIIIGVWFGADFPKPTMTREPAIEFRGEVERVACHSESFIFSALLMFWKAIVLALGIYIS 760
BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: K3X562_GLOUD (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X562_GLOUD) HSP 1 Score: 76.3 bits (186), Expect = 5.060e-11 Identity = 58/257 (22.57%), Postives = 114/257 (44.36%), Query Frame = 1 Query: 562 GSPFEVYILAPDQCVIEFLEIDVGECTTNLHRTVVHEW--------KDGITCE--GGLALPGDTRVLCGFIPTRTSLGRAMMGFSAFGAIYAIFFLVWIVKHRETSVVKMGQPFVCQLFLLGCIALNLTAPLYLGEPSTLVCRLRPCVLHTALTFASSCLYMKTYRVHRLFNNQTLARMSISDRSLVVWVLRLVSVDVMFLTLWLILDGPRASMVY--FTQGYAELEKTTCDPGAAYFGTILWIYKGGLNLFGVVMA 1296 S + +I C F E +V C + R V + W + C+ LP D V C ++P + + S + +V++ R+ ++K Q + +L + G I + L+A +Y GEP+ ++C RP ++ + T L++K+ RV+R+F ++ R+ IS +V + VD++ + +W D P+ +M + E+E+ C + F +L +K + G+ ++ Sbjct: 561 ASRWSSWISTKPTCDSTFYEYNVSACDSASKRRVHYYWLLADPANATRSLECDLSSTTMLPEDVLVDCEYVPFSSPVFMVCAITSGVLIGVLVLAMVFVFVCRKAPIIKRSQFELLELMIFGGILVCLSAVMYAGEPTNVLCAARPLLVSSGFTTIFGALFVKSLRVYRVFMKSSMKRVKISTLMMVKVLSVFYVVDLIIIGVWFGADFPKPTMTREPAIEFRGEVERVACHSESFIFSALLMFWKAIVLALGIYIS 817 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9933.21581.1 >prot_Ecto-sp13_S_contig9933.21581.1 ID=prot_Ecto-sp13_S_contig9933.21581.1|Name=mRNA_Ecto-sp13_S_contig9933.21581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=453bp VNATSELIVVAEPEQGEDCDVGGGIPLEISSMPVTTSYVDIPASIFFQGSback to top mRNA from alignment at Ecto-sp13_S_contig9933:159..5853+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9933.21581.1 ID=mRNA_Ecto-sp13_S_contig9933.21581.1|Name=mRNA_Ecto-sp13_S_contig9933.21581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5695bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9933:159..5853+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9933:159..5853+ >mRNA_Ecto-sp13_S_contig9933.21581.1 ID=mRNA_Ecto-sp13_S_contig9933.21581.1|Name=mRNA_Ecto-sp13_S_contig9933.21581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1359bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9933:159..5853+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |