mRNA_Ecto-sp13_S_contig9932.21580.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9932.21580.1 vs. uniprot
Match: D7FYP5_ECTSI (ADF-H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYP5_ECTSI) HSP 1 Score: 285 bits (729), Expect = 1.920e-92 Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 1 Query: 4 TTGVTVNDEAVEMFNAFKLHRAPHDNRYFIYKIENDAEIIVDTFGDKTKTYEDFTACLPPNECRYGVFDLDFTTRDGREANKLIFISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELDYIKSQVQKV 420 TTGVTVNDEAVEMFNAFKLHRAPHDNRYFIYKIENDAEIIVDTFGDKTKTY+DFTACLPPNECRYGVFDLDFTTRDGREANKLIFISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELDYIKSQVQKV Sbjct: 2 TTGVTVNDEAVEMFNAFKLHRAPHDNRYFIYKIENDAEIIVDTFGDKTKTYDDFTACLPPNECRYGVFDLDFTTRDGREANKLIFISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELDYIKSQVQKV 140
BLAST of mRNA_Ecto-sp13_S_contig9932.21580.1 vs. uniprot
Match: A0A836CHD0_9STRA (ADF-H domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHD0_9STRA) HSP 1 Score: 181 bits (459), Expect = 5.550e-52 Identity = 81/140 (57.86%), Postives = 110/140 (78.57%), Query Frame = 1 Query: 4 TTGVTVNDEAVEMFNAFKLHRAPHDNRYFIYKI-ENDAEIIVDTFGDKTKTYEDFTACLPPNECRYGVFDLDFTTRDGREANKLIFISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELDYIKSQVQKV 420 +TG+ VNDE V FN FKL + P + RY++YKI +N EI++DTFG++ TY+DF + LPP ECRYG+FDLD+ T+DGR ++KL+FI+W+PD A +KNKM+YA SKE+IK AL+G+G+HLQA D ELEL I S VQ++ Sbjct: 2 STGIIVNDEVVTQFNLFKLKKEPCNYRYYVYKISDNGQEIVIDTFGERDATYDDFCSKLPPKECRYGLFDLDYDTKDGRSSSKLVFIAWTPDEAAVKNKMMYAGSKESIKGALVGVGVHLQACDASELELATILSSVQRI 141
BLAST of mRNA_Ecto-sp13_S_contig9932.21580.1 vs. uniprot
Match: A0A836C9C2_9STRA (ADF-H domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9C2_9STRA) HSP 1 Score: 187 bits (476), Expect = 1.110e-51 Identity = 87/140 (62.14%), Postives = 113/140 (80.71%), Query Frame = 1 Query: 7 TGVTVNDEAVEMFNAFKLHRAPHDNRYFIYKI-ENDAEIIVDTFGDKTKTYEDFTACLPPNECRYGVFDLDFTTR-DGREANKLIFISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELDYIKSQVQKV 420 TGV+VND V FN FKL + P ++R++IYKI +N AEI++D FG + KTY+DF ACLPPNECRYG+FDL++TT+ + R KLI I+W+PDTAKIKNKM+YA SK+A+KSAL+G+GIHLQATD ELEL YI + V ++ Sbjct: 221 TGVSVNDAVVTQFNNFKLKKEPDNHRFYIYKISDNGAEIVIDQFGTREKTYDDFVACLPPNECRYGLFDLEYTTKTESRPVEKLILIAWTPDTAKIKNKMMYAGSKDALKSALVGVGIHLQATDASELELQYIINSVSRI 360
BLAST of mRNA_Ecto-sp13_S_contig9932.21580.1 vs. uniprot
Match: A0A1V9ZSG9_9STRA (Actin-depolymerizing factor n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSG9_9STRA) HSP 1 Score: 172 bits (435), Expect = 2.230e-48 Identity = 82/140 (58.57%), Postives = 109/140 (77.86%), Query Frame = 1 Query: 4 TTGVTVNDEAVEMFNAFKLHRAPHDNRYFIYKIENDAEIIVDTFGDKTKTYEDFTACLPP--NECRYGVFDLDFTTRDGREANKLIFISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELDYIKSQVQK 417 ++GV V+D+ V FN FKL RAP++ RYFIYKIEN +E++++ G++T+TYEDF L +ECRYG+ DLDFTT+DGR +KL+FISWSPDTAKIK+KM+YA+SKEAIK L+G+GI+L ATD EL + I+ V K Sbjct: 4 SSGVGVHDDVVTEFNDFKLQRAPYNFRYFIYKIENSSEVVIEHRGERTETYEDFATKLKSIGDECRYGLIDLDFTTKDGRPTSKLVFISWSPDTAKIKSKMLYASSKEAIKRCLVGVGIYLSATDASELSMAAIEDGVSK 143
BLAST of mRNA_Ecto-sp13_S_contig9932.21580.1 vs. uniprot
Match: A0A067C057_SAPPC (ADF-H domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C057_SAPPC) HSP 1 Score: 170 bits (431), Expect = 8.140e-48 Identity = 80/140 (57.14%), Postives = 109/140 (77.86%), Query Frame = 1 Query: 4 TTGVTVNDEAVEMFNAFKLHRAPHDNRYFIYKIENDAEIIVDTFGDKTKTYEDFTACL--PPNECRYGVFDLDFTTRDGREANKLIFISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELDYIKSQVQK 417 ++GV V+D+ V FN FKL +AP++ RYFIYKIE D+EI+++ G++++TY+DF A L NECRYG+ DLDFTT+DGR +KL+FISWSPDTA++K+KM+YA+SKEAIK L+G+GI+L ATD EL I+ V K Sbjct: 2 SSGVGVSDDVVTEFNDFKLQKAPYNFRYFIYKIEGDSEIVIEHRGERSETYDDFAAKLNATTNECRYGLIDLDFTTKDGRPTSKLVFISWSPDTARVKSKMLYASSKEAIKRGLVGVGIYLSATDASELSFSSIQDGVSK 141
BLAST of mRNA_Ecto-sp13_S_contig9932.21580.1 vs. uniprot
Match: G4ZB87_PHYSP (ADF-H domain-containing protein n=16 Tax=Peronosporaceae TaxID=4777 RepID=G4ZB87_PHYSP) HSP 1 Score: 167 bits (422), Expect = 1.730e-46 Identity = 78/140 (55.71%), Postives = 106/140 (75.71%), Query Frame = 1 Query: 4 TTGVTVNDEAVEMFNAFKLHRAPHDNRYFIYKIENDAEIIVDTFGDKTKTYEDFTACLPP--NECRYGVFDLDFTTRDGREANKLIFISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELDYIKSQVQK 417 ++GV V+DE + FN FKL RAPHD RYFIYKI +D+EI++++ G +++Y+D L N+CRY + DLD TT+DGR +K++F+SWSPDTA+IK+KM+YA+SKEAIK LMG+GIHL ATD EL L+ I+ V K Sbjct: 2 SSGVGVDDEVITQFNDFKLKRAPHDYRYFIYKIVDDSEIVIESTGPSSESYQDMADKLAQITNDCRYALVDLDLTTKDGRPTSKIVFLSWSPDTARIKSKMLYASSKEAIKRVLMGVGIHLTATDASELSLESIEDGVSK 141
BLAST of mRNA_Ecto-sp13_S_contig9932.21580.1 vs. uniprot
Match: A0A1V9ZGW8_9STRA (Actin-depolymerizing factor n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZGW8_9STRA) HSP 1 Score: 162 bits (411), Expect = 6.940e-45 Identity = 80/140 (57.14%), Postives = 108/140 (77.14%), Query Frame = 1 Query: 4 TTGVTVNDEAVEMFNAFKLHRAPHDNRYFIYKIENDAEIIVDTFGDKTKTYEDFTACLPP--NECRYGVFDLDFTTRDGREANKLIFISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELDYIKSQVQK 417 ++GV V+D+ + FN FKL RAP++ RYFIYKIE+D EI+++ G+++++YEDF L +ECRYG+ DLDFTT+DGR +KL+FISWSPDT+KIK+KMVYA+SKEAIK L+G+GI+L ATD EL I+ V K Sbjct: 2 SSGVGVHDDVISEFNDFKLQRAPYNFRYFIYKIEHD-EIVIEHRGERSESYEDFANKLLEIQSECRYGLIDLDFTTKDGRPTSKLVFISWSPDTSKIKSKMVYASSKEAIKRCLVGVGIYLSATDASELAFSAIEDGVSK 140
BLAST of mRNA_Ecto-sp13_S_contig9932.21580.1 vs. uniprot
Match: K0SV25_THAOC (ADF-H domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SV25_THAOC) HSP 1 Score: 162 bits (411), Expect = 6.940e-45 Identity = 72/130 (55.38%), Postives = 100/130 (76.92%), Query Frame = 1 Query: 4 TTGVTVNDEAVEMFNAFKLHRAPHDNRYFIYKIENDAEIIVDTFGDKTKTYEDFTACLPPNECRYGVFDLDFTTRDGREANKLIFISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELD 393 +TGV V+DE FN FKL + P+ RYFIY+I+N EI++ + GD++KTYEDF LP N+CRYG+ D++F T DGR +K++FISW+PDTA I+ KM+Y+ SKEA+KSAL+G+GIH+ ATD EL+ + Sbjct: 2 STGVAVSDEVSTSFNKFKLGQEPYKLRYFIYEIKNKKEIVISSQGDRSKTYEDFVEELPENDCRYGLIDIEFETDDGRPTSKIVFISWNPDTASIRPKMLYSGSKEALKSALVGVGIHINATDHSELDFE 131
BLAST of mRNA_Ecto-sp13_S_contig9932.21580.1 vs. uniprot
Match: A0A484DQW3_BRELC (ADF-H domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQW3_BRELC) HSP 1 Score: 160 bits (404), Expect = 7.650e-44 Identity = 74/140 (52.86%), Postives = 104/140 (74.29%), Query Frame = 1 Query: 4 TTGVTVNDEAVEMFNAFKLHRAPHDNRYFIYKIENDAEIIVDTFGDKTKTYEDFTACLPP--NECRYGVFDLDFTTRDGREANKLIFISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELDYIKSQVQK 417 ++GV V D+ + FN FKL RAPHD RYFIYKIE D+EI++++ G +++Y+D L +ECRY + DLD T++DGR +K++F+SWSPDTA+IK+KM+YA+SK+AIK L+G+GIHL ATD EL + I+ V K Sbjct: 2 SSGVGVKDDVITQFNDFKLKRAPHDYRYFIYKIEEDSEIVIESTGLSSESYQDMADKLAQITDECRYALVDLDLTSKDGRPTSKIVFLSWSPDTARIKSKMLYASSKDAIKRVLVGVGIHLTATDASELSFESIEEGVSK 141
BLAST of mRNA_Ecto-sp13_S_contig9932.21580.1 vs. uniprot
Match: A0A7S1D6V8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6V8_CYCTE) HSP 1 Score: 156 bits (395), Expect = 1.550e-42 Identity = 71/129 (55.04%), Postives = 94/129 (72.87%), Query Frame = 1 Query: 7 TGVTVNDEAVEMFNAFKLHRAPHDNRYFIYKIENDAEIIVDTFGDKTKTYEDFTACLPPNECRYGVFDLDFTTRDGREANKLIFISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELD 393 TGV V D+ FN FKL R RYFIY IEN I+++ G+++KTY+DF A LP N+CRYG+ DL+F T DGR +K++FISW+PDTA ++ KM+Y+ SKEAIKS L G+GIH+ ATD EL+L+ Sbjct: 3 TGVIVGDDVSFAFNEFKLQRGDFKLRYFIYSIENKKTIVIEKQGERSKTYDDFVADLPENDCRYGLIDLEFETDDGRPTSKIVFISWNPDTASVRPKMLYSGSKEAIKSVLTGVGIHINATDYSELDLE 131 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9932.21580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9932.21580.1 >prot_Ecto-sp13_S_contig9932.21580.1 ID=prot_Ecto-sp13_S_contig9932.21580.1|Name=mRNA_Ecto-sp13_S_contig9932.21580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp MFNAFKLHRAPHDNRYFIYKIENDAEIIVDTFGDKTKTYEDFTACLPPNEback to top mRNA from alignment at Ecto-sp13_S_contig9932:1780..3927+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9932.21580.1 ID=mRNA_Ecto-sp13_S_contig9932.21580.1|Name=mRNA_Ecto-sp13_S_contig9932.21580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2148bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9932:1780..3927+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9932:1780..3927+ >mRNA_Ecto-sp13_S_contig9932.21580.1 ID=mRNA_Ecto-sp13_S_contig9932.21580.1|Name=mRNA_Ecto-sp13_S_contig9932.21580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9932:1780..3927+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |