mRNA_Ecto-sp13_S_contig993.21578.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig993.21578.1
Unique NamemRNA_Ecto-sp13_S_contig993.21578.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig993.21578.1 vs. uniprot
Match: D7FH42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH42_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 5.200e-90
Identity = 167/231 (72.29%), Postives = 181/231 (78.35%), Query Frame = 3
Query:   24 RRKMARVDGGGGDTSGESRAPGGDDATREGSGGEKKRSVLKAAPVTVKEEDQEHPPMDAGVDDCAPSKSEDGEELRSRGGAGG*GGTSDGDLQVVAHDRSPDVVKVKREVRRMKPGKFDPKSFHLEARKERDARDKAFTATMLQGVGMILGGRGQKDGSGATDGAGGASGVDRGKMEAAEKSVSLLRNSRQDSILAAKEGYGSQDEVIKANQLHQKAFARQEALISGVDDG 716
            RRKMAR +GGG DTSGES+APG                   AAPV ++E++QE PPMD G DD APS+SED EELRSRGGAGG GG SDGDL+ VA D SPDVV+VKR+ RR K  KFDPKSF LEARKERD RDKAFTATMLQGVGM LGGRGQKDGSGA D AGGASGVD GKME +EKSVSLLRNS QDSILAAKEGYGSQ  V   N+L+Q+A ARQEALISGVDDG
Sbjct:  239 RRKMARANGGGRDTSGESQAPGXXXXXXXXXXXXXXXXXXXAAPVAMEEDNQEDPPMDVGGDDWAPSESEDKEELRSRGGAGGEGGMSDGDLEDVADDSSPDVVEVKRKGRRRKSEKFDPKSFQLEARKERDERDKAFTATMLQGVGMTLGGRGQKDGSGAADSAGGASGVDHGKMETSEKSVSLLRNSLQDSILAAKEGYGSQAAVKNKNKLYQEAVARQEALISGVDDG 469          
BLAST of mRNA_Ecto-sp13_S_contig993.21578.1 vs. uniprot
Match: D7FKC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC1_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 4.950e-79
Identity = 155/216 (71.76%), Postives = 165/216 (76.39%), Query Frame = 3
Query:   24 RRKMARVDGGGGDTSGESRAPGGDDATREGSGGEKKRSVLKAAPVTVKEEDQEHPPMDAGVDDCAPSKSEDGEELRSRGGAGG*GGTSDGDLQVVAHDRSPDVVKVKREVRRMKPGKFDPKSFHLEARKERDARDKAFTATMLQGVGMILGGRGQKDGSGATDGAGGASGVDRGKMEAAEKSVSLLRNSRQDSILAAKEGYGSQDEVIKANQLHQK 671
            RRKMARV+ GGGDTSGES+AP       E  G  K     KAAPV V+E+DQE PPMD G DD APS+SED EELRSRGGA G GG SDGDL  VA D   DVV+ KR+ RR K  KFDPK F LEARKERDARDKAFTATMLQGVGMILGGRGQKD  GA D AGGASGVDRGKMEAAEKSV LLRN  QDSILAAKEGYGSQ  V   ++L+QK
Sbjct:  165 RRKMARVNDGGGDTSGESQAPXXXXXXXEDIGEGKXXXXRKAAPVAVEEDDQEDPPMDVGGDDWAPSESEDEEELRSRGGAVGEGGMSDGDLHDVADDSLLDVVEAKRKGRRRKSEKFDPKCFQLEARKERDARDKAFTATMLQGVGMILGGRGQKDEPGAADSAGGASGVDRGKMEAAEKSVFLLRNIWQDSILAAKEGYGSQAAVKNKHELYQK 380          
BLAST of mRNA_Ecto-sp13_S_contig993.21578.1 vs. uniprot
Match: A0A6H5K6J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6J2_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 1.370e-69
Identity = 149/221 (67.42%), Postives = 166/221 (75.11%), Query Frame = 3
Query:   24 RRKMARVDGGGGDTSGESRAPGGDDATREGSG---GEKKRSVLKAAPVTVKEEDQEHPPMD---AGVDDCAPSKSEDGEELRSRGGAGG*GGTSDGDLQVVAHDRSPDVVKVKREVRRMKPGKFDPKSFHLEARKERDARDKAFTATMLQGVGMILGGRGQKDGSGATDGAGGASGVDRGKMEAAEKSVSLLRNSRQDSILAAKEG--YGSQDEVIKANQL 662
            RRKMA   GGGG+TSGES+ P  DDA  E SG   G  K+S  KAAPV V+E+ +  PPM+   AG  D   S+SED +EL SRGGA G GG SDGDL+  A D SPDV++VKRE RR K GKFDPKSF LEARKE DAR+KAFTATMLQGVGMI+GGRGQKDGS A D AGGASGVDRGKME AEKSVSLLRNS QDSI   +EG  YG+ DEV +A QL
Sbjct:  156 RRKMATAHGGGGETSGESQVPSRDDAAGEVSGVSGGGGKKSRGKAAPVAVEEDAEREPPMETGGAGGRDWPSSESEDQDELHSRGGARGEGGMSDGDLEDAADDSSPDVLEVKREGRRRKSGKFDPKSFQLEARKESDARNKAFTATMLQGVGMIIGGRGQKDGSCAADCAGGASGVDRGKMETAEKSVSLLRNSWQDSIFG-REGRVYGNLDEVKEAYQL 375          
BLAST of mRNA_Ecto-sp13_S_contig993.21578.1 vs. uniprot
Match: D7G1M7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M7_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 1.790e-68
Identity = 137/194 (70.62%), Postives = 148/194 (76.29%), Query Frame = 3
Query:  135 SVLKAAPVTVKEEDQEHPPMDAGVDDCAPSKSEDGEELRSRGGAGG*GGTSDGDLQVVAHDRSPDVVKVKREVRRMKPGKFDPKSFHLEARKERDARDKAFTATMLQGVGMILGGRGQKDGSGATDGAGGASGVDRGKMEAAEKSVSLLRNSRQDSILAAKEGYGSQDEVIKANQLHQKAFARQEALISGVDDG 716
            S  KAA V         PPMD G DD APS+SED EELRSRGGAGG GG SDGDLQ VA D SPDVV+VKR+ RR K  K DPKSF L A KERDARDK FT+TMLQGVGMI+GG GQ DGSGA DGAGGASGV+RGKMEAAEKSVSLLR+S  DSI+A K GYGSQ EV      +Q A ARQ+ALISGV+DG
Sbjct:  293 SRRKAAMVAXXXXXXXDPPMDVGGDDWAPSESEDEEELRSRGGAGGEGGMSDGDLQDVADDSSPDVVEVKRKGRRRKSDKLDPKSFQLTATKERDARDKVFTSTMLQGVGMIIGGHGQ-DGSGAADGAGGASGVNRGKMEAAEKSVSLLRSSWMDSIVAEKHGYGSQAEVKGHYDKYQAAVARQQALISGVNDG 485          
BLAST of mRNA_Ecto-sp13_S_contig993.21578.1 vs. uniprot
Match: A0A6H5KRU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU9_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 7.070e-68
Identity = 134/175 (76.57%), Postives = 142/175 (81.14%), Query Frame = 3
Query:  192 MDAGVDDCAPSKSEDGEELRSRGGAGG*GGTSDGDLQVVAHDRSPDVVKVKREVRRMKPGKFDPKSFHLEARKERDARDKAFTATMLQGVGMILGGRGQKDGSGATDGAGGASGVDRGKMEAAEKSVSLLRNSRQDSILAAKEGYGSQDEVIKANQLHQKAFARQEALISGVDDG 716
            MD G DD APS+SED EELRSRGG  G GG SD DLQ VA D SPDVV+VKR  RR K  KFDPKSF LEARKERDAR KAFTATMLQGVGMILGGRGQKDGSG  D AGG SGVDRGKMEAAEKSVSLLR+S  DSILAA +GYGSQ EV +  +L+Q A ARQ+ALIS VDDG
Sbjct:  521 MDVGGDDWAPSESEDEEELRSRGGVCGEGGMSDRDLQDVADDSSPDVVEVKRNGRRRKSDKFDPKSFQLEARKERDARHKAFTATMLQGVGMILGGRGQKDGSGPADSAGGTSGVDRGKMEAAEKSVSLLRSSWMDSILAADKGYGSQTEVKEKYELYQAAVARQQALISAVDDG 695          
BLAST of mRNA_Ecto-sp13_S_contig993.21578.1 vs. uniprot
Match: A0A6H5KAJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.760e-12
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  147 AAPVTVKEEDQEHPPMDAGVD--DCAPSKSEDGEELRSRGGAGG*GGTSDGDLQVVAHDRSPDVVKVKREVRR 359
            AAPV V+E+ +E PPM+ G +  D   S+SED +ELRSRGGA G GG +DGDL+  A D SPDVV+V RE RR
Sbjct:   78 AAPVAVEEDAEEEPPMETGGEGGDWPSSESEDEDELRSRGGARGEGGMTDGDLEDAADDSSPDVVEVTREGRR 150          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig993.21578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FH42_ECTSI5.200e-9072.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKC1_ECTSI4.950e-7971.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6J2_9PHAE1.370e-6967.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1M7_ECTSI1.790e-6870.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRU9_9PHAE7.070e-6876.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAJ0_9PHAE2.760e-1258.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig993contigEcto-sp13_S_contig993:14353..15378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1026
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_005650.2
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464253.6442113-UTR-Ecto-sp13_S_contig993:14352..147111681464253.6442113-UTR-Ecto-sp13_S_contig993:14352..14711Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig993 14353..14711 +
1681464253.6709988-UTR-Ecto-sp13_S_contig993:15083..153781681464253.6709988-UTR-Ecto-sp13_S_contig993:15083..15378Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig993 15084..15378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464253.659013-CDS-Ecto-sp13_S_contig993:14711..150831681464253.659013-CDS-Ecto-sp13_S_contig993:14711..15083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig993 14712..15083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig993.21578.1prot_Ecto-sp13_S_contig993.21578.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig993 14712..15083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig993.21578.1

>prot_Ecto-sp13_S_contig993.21578.1 ID=prot_Ecto-sp13_S_contig993.21578.1|Name=mRNA_Ecto-sp13_S_contig993.21578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
MKPGKFDPKSFHLEARKERDARDKAFTATMLQGVGMILGGRGQKDGSGAT
DGAGGASGVDRGKMEAAEKSVSLLRNSRQDSILAAKEGYGSQDEVIKANQ
LHQKAFARQEALISGVDDGLSLV*
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mRNA from alignment at Ecto-sp13_S_contig993:14353..15378+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig993.21578.1 ID=mRNA_Ecto-sp13_S_contig993.21578.1|Name=mRNA_Ecto-sp13_S_contig993.21578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig993:14353..15378+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGGGGAAAGGGGGAGGGGAAACGGCGCAAGATGGCAAGAGTTGACGGC GGAGGTGGCGACACGAGCGGGGAATCCCGAGCGCCCGGTGGTGACGACGC TACGAGGGAAGGCAGCGGTGGGGAAAAGAAGAGGAGCGTTCTGAAGGCAG CGCCGGTGACGGTGAAGGAGGAGGATCAGGAGCATCCCCCGATGGACGCA GGCGTAGATGACTGTGCCCCCTCGAAATCGGAGGACGGAGAGGAACTGCG CAGTCGAGGGGGGGCTGGGGGATAGGGCGGTACGTCTGACGGCGACTTGC AAGTAGTGGCTCACGACAGGTCACCAGACGTGGTGAAGGTAAAGCGTGAG GTTCGCCGCATGAAACCTGGCAAGTTCGATCCGAAAAGTTTCCATCTCGA GGCAAGGAAGGAGAGAGACGCACGTGACAAAGCGTTCACGGCCACCATGC TACAAGGTGTAGGAATGATCCTCGGCGGGCGTGGGCAGAAGGACGGGTCA GGCGCCACCGATGGTGCTGGTGGTGCGTCTGGCGTGGATCGGGGGAAGAT GGAGGCAGCGGAAAAATCAGTTTCCCTGCTCAGGAACAGTCGGCAGGACT CGATTTTGGCCGCGAAGGAAGGATACGGCAGTCAGGACGAAGTAATAAAG GCCAACCAGTTACACCAAAAAGCCTTCGCCCGGCAGGAGGCCTTGATCTC CGGAGTCGACGACGGGTTGTCGTTGGTGTAGGTCTGACTATGTCGTGCTG CTTTCACGAGCCAGGAAGCGTGGTTTGTTGGGTGTGTTCCTAGTGGACAG CAAGAGCGGAGATGGTGCCTGCTTGTTCATGTGCCTTAAGTCAGTCGGGA AAGGCGCAGCATTTGGAGTAGCGATGGGCATGCTGTTGCTTTTTCTTTTA AACATTGGCGCCGATTGTTGGCGTAGAGGGTAGAAGTTCTTGTCGAGCAT AGGGAAGGAGCGGGGAGTCAACGGACGAACAAATCGGGATGGGGTTAAGG TGTTTGCCATTGCCACGAGGGTTGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig993:14353..15378+

>mRNA_Ecto-sp13_S_contig993.21578.1 ID=mRNA_Ecto-sp13_S_contig993.21578.1|Name=mRNA_Ecto-sp13_S_contig993.21578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig993:14353..15378+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAACCTGGCAAGTTCGATCCGAAAAGTTTCCATCTCGAGGCAAGGAA
GGAGAGAGACGCACGTGACAAAGCGTTCACGGCCACCATGCTACAAGGTG
TAGGAATGATCCTCGGCGGGCGTGGGCAGAAGGACGGGTCAGGCGCCACC
GATGGTGCTGGTGGTGCGTCTGGCGTGGATCGGGGGAAGATGGAGGCAGC
GGAAAAATCAGTTTCCCTGCTCAGGAACAGTCGGCAGGACTCGATTTTGG
CCGCGAAGGAAGGATACGGCAGTCAGGACGAAGTAATAAAGGCCAACCAG
TTACACCAAAAAGCCTTCGCCCGGCAGGAGGCCTTGATCTCCGGAGTCGA
CGACGGGTTGTCGTTGGTGTAG
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