mRNA_Ecto-sp13_S_contig993.21578.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig993.21578.1 vs. uniprot
Match: D7FH42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH42_ECTSI) HSP 1 Score: 286 bits (732), Expect = 5.200e-90 Identity = 167/231 (72.29%), Postives = 181/231 (78.35%), Query Frame = 3
Query: 24 RRKMARVDGGGGDTSGESRAPGGDDATREGSGGEKKRSVLKAAPVTVKEEDQEHPPMDAGVDDCAPSKSEDGEELRSRGGAGG*GGTSDGDLQVVAHDRSPDVVKVKREVRRMKPGKFDPKSFHLEARKERDARDKAFTATMLQGVGMILGGRGQKDGSGATDGAGGASGVDRGKMEAAEKSVSLLRNSRQDSILAAKEGYGSQDEVIKANQLHQKAFARQEALISGVDDG 716
RRKMAR +GGG DTSGES+APG AAPV ++E++QE PPMD G DD APS+SED EELRSRGGAGG GG SDGDL+ VA D SPDVV+VKR+ RR K KFDPKSF LEARKERD RDKAFTATMLQGVGM LGGRGQKDGSGA D AGGASGVD GKME +EKSVSLLRNS QDSILAAKEGYGSQ V N+L+Q+A ARQEALISGVDDG
Sbjct: 239 RRKMARANGGGRDTSGESQAPGXXXXXXXXXXXXXXXXXXXAAPVAMEEDNQEDPPMDVGGDDWAPSESEDKEELRSRGGAGGEGGMSDGDLEDVADDSSPDVVEVKRKGRRRKSEKFDPKSFQLEARKERDERDKAFTATMLQGVGMTLGGRGQKDGSGAADSAGGASGVDHGKMETSEKSVSLLRNSLQDSILAAKEGYGSQAAVKNKNKLYQEAVARQEALISGVDDG 469
BLAST of mRNA_Ecto-sp13_S_contig993.21578.1 vs. uniprot
Match: D7FKC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC1_ECTSI) HSP 1 Score: 255 bits (652), Expect = 4.950e-79 Identity = 155/216 (71.76%), Postives = 165/216 (76.39%), Query Frame = 3
Query: 24 RRKMARVDGGGGDTSGESRAPGGDDATREGSGGEKKRSVLKAAPVTVKEEDQEHPPMDAGVDDCAPSKSEDGEELRSRGGAGG*GGTSDGDLQVVAHDRSPDVVKVKREVRRMKPGKFDPKSFHLEARKERDARDKAFTATMLQGVGMILGGRGQKDGSGATDGAGGASGVDRGKMEAAEKSVSLLRNSRQDSILAAKEGYGSQDEVIKANQLHQK 671
RRKMARV+ GGGDTSGES+AP E G K KAAPV V+E+DQE PPMD G DD APS+SED EELRSRGGA G GG SDGDL VA D DVV+ KR+ RR K KFDPK F LEARKERDARDKAFTATMLQGVGMILGGRGQKD GA D AGGASGVDRGKMEAAEKSV LLRN QDSILAAKEGYGSQ V ++L+QK
Sbjct: 165 RRKMARVNDGGGDTSGESQAPXXXXXXXEDIGEGKXXXXRKAAPVAVEEDDQEDPPMDVGGDDWAPSESEDEEELRSRGGAVGEGGMSDGDLHDVADDSLLDVVEAKRKGRRRKSEKFDPKCFQLEARKERDARDKAFTATMLQGVGMILGGRGQKDEPGAADSAGGASGVDRGKMEAAEKSVFLLRNIWQDSILAAKEGYGSQAAVKNKHELYQK 380
BLAST of mRNA_Ecto-sp13_S_contig993.21578.1 vs. uniprot
Match: A0A6H5K6J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6J2_9PHAE) HSP 1 Score: 231 bits (588), Expect = 1.370e-69 Identity = 149/221 (67.42%), Postives = 166/221 (75.11%), Query Frame = 3
Query: 24 RRKMARVDGGGGDTSGESRAPGGDDATREGSG---GEKKRSVLKAAPVTVKEEDQEHPPMD---AGVDDCAPSKSEDGEELRSRGGAGG*GGTSDGDLQVVAHDRSPDVVKVKREVRRMKPGKFDPKSFHLEARKERDARDKAFTATMLQGVGMILGGRGQKDGSGATDGAGGASGVDRGKMEAAEKSVSLLRNSRQDSILAAKEG--YGSQDEVIKANQL 662
RRKMA GGGG+TSGES+ P DDA E SG G K+S KAAPV V+E+ + PPM+ AG D S+SED +EL SRGGA G GG SDGDL+ A D SPDV++VKRE RR K GKFDPKSF LEARKE DAR+KAFTATMLQGVGMI+GGRGQKDGS A D AGGASGVDRGKME AEKSVSLLRNS QDSI +EG YG+ DEV +A QL
Sbjct: 156 RRKMATAHGGGGETSGESQVPSRDDAAGEVSGVSGGGGKKSRGKAAPVAVEEDAEREPPMETGGAGGRDWPSSESEDQDELHSRGGARGEGGMSDGDLEDAADDSSPDVLEVKREGRRRKSGKFDPKSFQLEARKESDARNKAFTATMLQGVGMIIGGRGQKDGSCAADCAGGASGVDRGKMETAEKSVSLLRNSWQDSIFG-REGRVYGNLDEVKEAYQL 375
BLAST of mRNA_Ecto-sp13_S_contig993.21578.1 vs. uniprot
Match: D7G1M7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M7_ECTSI) HSP 1 Score: 231 bits (589), Expect = 1.790e-68 Identity = 137/194 (70.62%), Postives = 148/194 (76.29%), Query Frame = 3
Query: 135 SVLKAAPVTVKEEDQEHPPMDAGVDDCAPSKSEDGEELRSRGGAGG*GGTSDGDLQVVAHDRSPDVVKVKREVRRMKPGKFDPKSFHLEARKERDARDKAFTATMLQGVGMILGGRGQKDGSGATDGAGGASGVDRGKMEAAEKSVSLLRNSRQDSILAAKEGYGSQDEVIKANQLHQKAFARQEALISGVDDG 716
S KAA V PPMD G DD APS+SED EELRSRGGAGG GG SDGDLQ VA D SPDVV+VKR+ RR K K DPKSF L A KERDARDK FT+TMLQGVGMI+GG GQ DGSGA DGAGGASGV+RGKMEAAEKSVSLLR+S DSI+A K GYGSQ EV +Q A ARQ+ALISGV+DG
Sbjct: 293 SRRKAAMVAXXXXXXXDPPMDVGGDDWAPSESEDEEELRSRGGAGGEGGMSDGDLQDVADDSSPDVVEVKRKGRRRKSDKLDPKSFQLTATKERDARDKVFTSTMLQGVGMIIGGHGQ-DGSGAADGAGGASGVNRGKMEAAEKSVSLLRSSWMDSIVAEKHGYGSQAEVKGHYDKYQAAVARQQALISGVNDG 485
BLAST of mRNA_Ecto-sp13_S_contig993.21578.1 vs. uniprot
Match: A0A6H5KRU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU9_9PHAE) HSP 1 Score: 234 bits (598), Expect = 7.070e-68 Identity = 134/175 (76.57%), Postives = 142/175 (81.14%), Query Frame = 3
Query: 192 MDAGVDDCAPSKSEDGEELRSRGGAGG*GGTSDGDLQVVAHDRSPDVVKVKREVRRMKPGKFDPKSFHLEARKERDARDKAFTATMLQGVGMILGGRGQKDGSGATDGAGGASGVDRGKMEAAEKSVSLLRNSRQDSILAAKEGYGSQDEVIKANQLHQKAFARQEALISGVDDG 716
MD G DD APS+SED EELRSRGG G GG SD DLQ VA D SPDVV+VKR RR K KFDPKSF LEARKERDAR KAFTATMLQGVGMILGGRGQKDGSG D AGG SGVDRGKMEAAEKSVSLLR+S DSILAA +GYGSQ EV + +L+Q A ARQ+ALIS VDDG
Sbjct: 521 MDVGGDDWAPSESEDEEELRSRGGVCGEGGMSDRDLQDVADDSSPDVVEVKRNGRRRKSDKFDPKSFQLEARKERDARHKAFTATMLQGVGMILGGRGQKDGSGPADSAGGTSGVDRGKMEAAEKSVSLLRSSWMDSILAADKGYGSQTEVKEKYELYQAAVARQQALISAVDDG 695
BLAST of mRNA_Ecto-sp13_S_contig993.21578.1 vs. uniprot
Match: A0A6H5KAJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ0_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 2.760e-12 Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 3
Query: 147 AAPVTVKEEDQEHPPMDAGVD--DCAPSKSEDGEELRSRGGAGG*GGTSDGDLQVVAHDRSPDVVKVKREVRR 359
AAPV V+E+ +E PPM+ G + D S+SED +ELRSRGGA G GG +DGDL+ A D SPDVV+V RE RR
Sbjct: 78 AAPVAVEEDAEEEPPMETGGEGGDWPSSESEDEDELRSRGGARGEGGMTDGDLEDAADDSSPDVVEVTREGRR 150 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig993.21578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig993.21578.1 >prot_Ecto-sp13_S_contig993.21578.1 ID=prot_Ecto-sp13_S_contig993.21578.1|Name=mRNA_Ecto-sp13_S_contig993.21578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp MKPGKFDPKSFHLEARKERDARDKAFTATMLQGVGMILGGRGQKDGSGATback to top mRNA from alignment at Ecto-sp13_S_contig993:14353..15378+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig993.21578.1 ID=mRNA_Ecto-sp13_S_contig993.21578.1|Name=mRNA_Ecto-sp13_S_contig993.21578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig993:14353..15378+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig993:14353..15378+ >mRNA_Ecto-sp13_S_contig993.21578.1 ID=mRNA_Ecto-sp13_S_contig993.21578.1|Name=mRNA_Ecto-sp13_S_contig993.21578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig993:14353..15378+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |