mRNA_Ecto-sp13_S_contig99283.21575.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig99283.21575.1
Unique NamemRNA_Ecto-sp13_S_contig99283.21575.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig99283.21575.1 vs. uniprot
Match: D7FKS6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS6_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.440e-27
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 SRQSALTLLEWLGGEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 165
            +RQSALTLLEWLG EAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL
Sbjct:  485 NRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 539
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig99283.21575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKS6_ECTSI1.440e-2796.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig99283contigEcto-sp13_S_contig99283:335..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464253.4138124-CDS-Ecto-sp13_S_contig99283:334..5021681464253.4138124-CDS-Ecto-sp13_S_contig99283:334..502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig99283 335..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig99283.21575.1prot_Ecto-sp13_S_contig99283.21575.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig99283 335..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig99283.21575.1

>prot_Ecto-sp13_S_contig99283.21575.1 ID=prot_Ecto-sp13_S_contig99283.21575.1|Name=mRNA_Ecto-sp13_S_contig99283.21575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
SRQSALTLLEWLGGEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWP
ELRAL*
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mRNA from alignment at Ecto-sp13_S_contig99283:335..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig99283.21575.1 ID=mRNA_Ecto-sp13_S_contig99283.21575.1|Name=mRNA_Ecto-sp13_S_contig99283.21575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99283:335..502- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGGCAGTCCGCGCTGACCCTCCTGGAATGGCTAGGGGGAGAGGCCGC
GGAAGGGCGGGGAGAAAACGTGTTGGATGTAGAGGTGCTGTGGACTCCCG
CGGACCCAGATGATTCTTTGGACCGGGAAGATTTGGACACCAAATGGCCG
GAGCTAAGAGCACTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig99283:335..502-

>mRNA_Ecto-sp13_S_contig99283.21575.1 ID=mRNA_Ecto-sp13_S_contig99283.21575.1|Name=mRNA_Ecto-sp13_S_contig99283.21575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99283:335..502- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGGCAGTCCGCGCTGACCCTCCTGGAATGGCTAGGGGGAGAGGCCGC
GGAAGGGCGGGGAGAAAACGTGTTGGATGTAGAGGTGCTGTGGACTCCCG
CGGACCCAGATGATTCTTTGGACCGGGAAGATTTGGACACCAAATGGCCG
GAGCTAAGAGCACTCTGA
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