mRNA_Ecto-sp13_S_contig9925.21571.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9925.21571.1
Unique NamemRNA_Ecto-sp13_S_contig9925.21571.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9925.21571.1 vs. uniprot
Match: D7FZ62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ62_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 1.120e-37
Identity = 75/79 (94.94%), Postives = 76/79 (96.20%), Query Frame = 3 
Query:   87 APARPVSPLGQDRAERVIRAMQGFTLAAPSLPPAPFEADWGHISALANLAAANTTSAEAGEEGGGAIEPATAPANEDYR 323
            A  RPVSPLGQDRAERVIRAMQGFTLAAPSLPPAPFEADWGH SALANLAAANTTSAEAGEEGGGAIEPATAPANED+R
Sbjct:  169 ATMRPVSPLGQDRAERVIRAMQGFTLAAPSLPPAPFEADWGHPSALANLAAANTTSAEAGEEGGGAIEPATAPANEDHR 247
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9925.21571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ62_ECTSI1.120e-3794.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9925contigEcto-sp13_S_contig9925:3050..5275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1291
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_006400.2
Cds size180
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464253.1994867-UTR-Ecto-sp13_S_contig9925:3049..40141681464253.1994867-UTR-Ecto-sp13_S_contig9925:3049..4014Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9925 3050..4014 -
1681464253.2287114-UTR-Ecto-sp13_S_contig9925:4563..45891681464253.2287114-UTR-Ecto-sp13_S_contig9925:4563..4589Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9925 4564..4589 -
1681464253.2382174-UTR-Ecto-sp13_S_contig9925:5155..52751681464253.2382174-UTR-Ecto-sp13_S_contig9925:5155..5275Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9925 5156..5275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464253.209649-CDS-Ecto-sp13_S_contig9925:4014..41571681464253.209649-CDS-Ecto-sp13_S_contig9925:4014..4157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9925 4015..4157 -
1681464253.2190952-CDS-Ecto-sp13_S_contig9925:4526..45631681464253.2190952-CDS-Ecto-sp13_S_contig9925:4526..4563Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9925 4527..4563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9925.21571.1prot_Ecto-sp13_S_contig9925.21571.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9925 4015..4563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9925.21571.1

>prot_Ecto-sp13_S_contig9925.21571.1 ID=prot_Ecto-sp13_S_contig9925.21571.1|Name=mRNA_Ecto-sp13_S_contig9925.21571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
MQGFTLAAPSLPPAPFEADWGHISALANLAAANTTSAEAGEEGGGAIEPA
TAPANEDYR*
back to top

mRNA from alignment at Ecto-sp13_S_contig9925:3050..5275-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9925.21571.1 ID=mRNA_Ecto-sp13_S_contig9925.21571.1|Name=mRNA_Ecto-sp13_S_contig9925.21571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2226bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9925:3050..5275- (Ectocarpus species13 EcNAP12_S_4_19m)
CACCGGATCAAGGGCAGGGACTAGCGTCGGGTAACAGGGACGGAGGCGAA
ACCGACGCTGTGGTGGAAGCACCTCAACCAGCACCAGCACCAGCGAGACC
TGTCTCACCTCTCGGCCAAGGTGAGCCCATTAATAACATACCTTTTCGAT
CCCAGATTTTCTCTTGGTACAAGCACAGGCGAGGGGGGAGGAATGCTGCC
GCTTGCGTAGGTGGTGTTGTCACCAGCCTCATGGCTCATCACCAACCTCA
CGCCCGTCGTAGTGAACGTGGCCTGCTGCTGGTGTGCGACGTGTGGTTGA
TCGTTGCAAACCGCGGTGGAGAGCCGATCAACTTCTCATACCACGCTTGT
GGGACACACGAACGCTCTGTGCGTGCAGTATGTCATGCCCACGATGCTGT
GGTGATATCCATACCTGTTTCATCCGTCACTCCGCGGTCACTTGATCCAG
TCCAAGGCCTGTTGTCTCTTCGGCGTTGTTCATCGAAAAAAAGTAGGGAG
ACTGCATCACCGCGCTGCCCCAGCCGTAACGGCAGCGCAGTTATCGCTAC
ATGGTCACCTCGCAAGTTTGCTGAGACTGGCATGCCGTGATCGGTGAACT
TCCCCACACCATGCATCCCTTTATGTCTGACCGTATCGTGTCTGTGTGCG
GGACTGTGGTTTCGTGCCTTGGCGCGTGGCGTCTAGATCGAGCAGAGCGA
GTGATCCGAGCGATGCAAGGCTTCACGCTCGCTGCCCCTTCTCTTCCACG
TAAGTTATTTCTTGATGGCAGTCTTGTAGAAAATCGAAATGTCCGACAAT
AAGCTACAGTAAGAAGGCAGACGTGTGACTCCTTCGTTGCGGTCGATAAA
GAAGGTCTTGTGCTTTAGCAAGAAACTTGGTGCACTGCTGCCCGCTCCTC
TCATGTTGCTCTGTTGCGCTGACTGTCTCTCTAGTGTGATCCCCAGTTCA
GCCGTGCGTTCCAACGCTGCTGTGTGGCTTCCCTCCTCGACATTCCTTTT
GGCCCCTGTGCTAGAGAGGTGGTGGACAGCCGTTGTCGGCGTTGATCTCC
CTTATTAATTGCCTACATTCCCCCTCTGTCGCATTCAACAATACCGTTTG
CTTTTGGCGGACGTGAAGCTGCTCCATTCGAGGCGGACTGGGGACATATT
AGCGCGCTCGCTAACCTTGCAGCAGCCAACACAACAAGCGCGGAAGCGGG
GGAGGAAGGGGGCGGGGCTATCGAACCGGCCACGGCTCCTGCAAACGAAG
ATTACCGATAGGATTAGGATTTGCGTCGTGTAAGGCTGCCCTTACGTGTC
AAGTGCCAAGATCGTGGAGGGGGAAGAGCAGCCATGAGCACGATGAACCC
TGCCACGTGTGTTGCCTTGATGACGGTCGCTCTCTCTCTTTCGCCTAGCA
TGGTTGGTGGAAGTCTTTTGTTTTGCGATTGCTCTAGCGCACGCTTACCT
GACTCGTGGTTGCTGCTGTGACGGGAGTCCACACACATGTGTCTCCAGAC
GCGCAGCTGTTGCACCTATATTTTGGTCAATCGGAGGACCAGCTTTCGTT
TCCGCCATGATGCACTGACATGTTTTGGAGTTTCGGGTTTGTGTTCGTTG
CATTTCTTAGAGTTGAGGTAAACGGTGTCCGTCGACCCTGGGATTCTGTT
GCAAGCATTTCTCTGTCGAGAAAACCCGCGGCTTGATACAGGAAGGTATT
GCACATGTGGTGTGTCAGCCGTCGATGGTGAAGCCTTTTGCGATGCTTTC
GTCTATGTAGTCCGGTAATAGGCTGCGGGGATTGGACTTGTGTTGACGAC
CAGGCAGCGTGTAGATGCACAACTTGTGTGCGGTTCTTAGATCTCGGGAA
CGTCGTGACTGGTAAGGGGGAGTGGGAGAGCATGTTTGTTTCAGCTTTTT
TGTTTGTTTCGTTGTTTGTCCAATCTCCTGCGCCAGATAGCTTCTCAGCC
CATGTACACCTACTGTACTTGTCGGGTAGTTTGCATGCTATGTTTGAAGC
ACGACAACGGGCTGGATCCTCGTCGCGATGGACGTGAGGGAAGAATTTTA
TAGCTGTACAAACGAATACAAAGTCGAGAGGGAAAACTCGTGGCACGCAT
TCCCGCCGTGTTGCCCAGGCTGAGGCATCCAAAGCAACAGATGATATAGC
TGCATGTAGTGAAATCTATCAACACTGACGTCCAGAAGAATAATAGGAGA
GAGAAAGAGAAACAGAGACAGAGACA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9925:3050..5275-

>mRNA_Ecto-sp13_S_contig9925.21571.1 ID=mRNA_Ecto-sp13_S_contig9925.21571.1|Name=mRNA_Ecto-sp13_S_contig9925.21571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9925:3050..5275- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAGGCTTCACGCTCGCTGCCCCTTCTCTTCCACCTGCTCCATTCGA
GGCGGACTGGGGACATATTAGCGCGCTCGCTAACCTTGCAGCAGCCAACA
CAACAAGCGCGGAAGCGGGGGAGGAAGGGGGCGGGGCTATCGAACCGGCC
ACGGCTCCTGCAAACGAAGATTACCGATAG
back to top