mRNA_Ecto-sp13_S_contig992.21565.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 213 bits (541), Expect = 3.990e-59 Identity = 190/392 (48.47%), Postives = 216/392 (55.10%), Query Frame = 1 Query: 1 GTSHSLCLKALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRIGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLKIRGLSNFDQPIGGVLPTSXXXXXXXXXXXXXXXDVXXXXXXXXXNLGFVFDHPIQRVVXXXXXXXXTVNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFVFFKNEGNSMLSLGSDFNRPVGSSVWPASLQRLTLGGHFRQSLQGLGNWMPNLEALRLLDYHSDSRT--SLLRGIEWPKRL 1170 G + CL A+IVA++ET DG SWYTSTKE QLASLEFCI CR +TL LKVD+ TPRRLLAAADAPPPHPKRLC TRVPRLRARRVTW++PTAA LR+ ++++ D D LEF FE SLEAV WP+RLK + K S FDQPI GV+ G + XXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX F + E + + S FNR +G+S WP ++ RLTLG +FRQSLQ LG WMPNLE LL + DS T S LRGIEWPK L Sbjct: 6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTV---------------------------------------------------------EVSGIAEVAKFHDKSLFDQPIAGVV---------------------WPDTLEQLTFGLFLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVCFGV-RQEVLGDVVVTSKFNRXIGASAWPKAMHRLTLGQNFRQSLQELGTWMPNLETFHLLHHIHDSGTEDSFLRGIEWPKGL 318
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 214 bits (545), Expect = 8.160e-59 Identity = 203/397 (51.13%), Postives = 237/397 (59.70%), Query Frame = 1 Query: 1 GTSHSLCLKALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRIGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLKIRGLSNFDQPIGGV-LPTSXXXXXXXXXXXXXXXDVXXXXXXXXXNLGFVFDHPIQRVVXXXXXXXXTVN--GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFVFFKNE--GNSMLSLGSDFNRPVGSSVWPASLQRLTLGGHFRQSLQGLGNWMPNLEALRLLDYHSDSR--TSLLRGIEWPKRL 1170 G + CL+ALIVA++ETCDG SWYTSTKELQLASL+FCI CR C+T+HL VD PRRLLA+ADAPPPHPKRLC TRVPRLR+RRVTWNMPTAA+LR P+FA+TD++ LEF + F SLEAV WP+ L+ + F + + G +F+QPI V P S XXX XXXXXXXXX XXXXXXXX G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + +E GN M+ + ++F++P+GSSV PA L+RL LG FRQSLQGLG WMPNLE L LL YH ++ LR IEWPK L Sbjct: 45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFL------------------------------------------QNVTFGG--DFNQPIERVKFPASLQQLIFRTSSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFGNRLNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWCDEFAGNGMV-IFANFDQPIGSSVGPALLRRLVLGHMFRQSLQGLGTWMPNLEVLHLLHYHGSGLGDSNFLREIEWPKGL 396
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 203 bits (517), Expect = 1.720e-57 Identity = 100/134 (74.63%), Postives = 111/134 (82.84%), Query Frame = 1 Query: 1 GTSHSLCLKALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRIGF 402 G +H+ CL +LIVA++ETCDGTSWYTSTKELQ ASLEFCI CR +HLKVD PR LLAAADAPPPHPKRLC TRVPRLRAR VTWNM AAEL +P+FA+TDVDCLEF F+GSLEAVTWP+RLK I F Sbjct: 8 GLTHNPCLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEF 141
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE) HSP 1 Score: 192 bits (487), Expect = 1.190e-49 Identity = 241/417 (57.79%), Postives = 261/417 (62.59%), Query Frame = 1 Query: 25 KALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRIGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLKIRGLSNFDQPIGGVLPTSXXXXXXXXXXXXXXXDVXXXXXXXXXNLGFVFDHPIQRVVXXXXXXXXTVNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFVFFKNEGNSMLSLGSDFNRPVGSSVWPASLQRLTLGGHFRQSLQGLGNWMPNLEALRLLDYHSDSRTS-LLRGIEWPKRLPSPDRL*RLELGWGHDSFNCRGLVRSQNWSVLTM 1272 K LI+A++E CDG WYTSTKELQLASLEFC+ CRK + L LKVDA TPR LLAA DAPPPH KR CRTRVPRLRARRV WNMPTA ELR MFAL DV+CL F F GSLEAV WP LK+I F XXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +S DV XXXXXXXX + XXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EG + S FN+ V WP S++RLTLG F++SLQGLG MPNLEA LLD+ + S + LRGIEWPK L L FNCRGL + V+ M Sbjct: 19 KDLILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIFFSSEFNQXXXXXXXXASLQKLDLENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLKE------------DVEXXXXXXXXXXXXXXXXXXEWATFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMHDGEGFENAVMLSAFNQRVDMCEWPVSMRRLTLGHKFKESLQGLGTRMPNLEAFHLLDHRNGSGSEDSLRGIEWPKVLRHLVVFSNSSLDGVVIPFNCRGLASLKRSPVVVM 423
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 190 bits (482), Expect = 1.410e-48 Identity = 94/134 (70.15%), Postives = 107/134 (79.85%), Query Frame = 1 Query: 1 GTSHSLCLKALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRIGF 402 G + S CLK L VA++ETCDG SWYTSTKELQLASLE C+ CR +TLHL VDA TPRRLLAAADAP PHPKRLC TRVPRLRARR TWN+PTA+ +R +FA DVD LEF + F GSL+A+ WP+RLK I F Sbjct: 130 GPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEF 263
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 185 bits (470), Expect = 2.560e-46 Identity = 94/134 (70.15%), Postives = 105/134 (78.36%), Query Frame = 1 Query: 1 GTSHSLCLKALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRIGF 402 G + + CL A+ VA+ ET DG SWYTSTKELQLASLEFC+ CR +TLHL VD PR LLAAAD PP HPKRL R RVPRLRAR VTWNMPTAAELR P+FAL D+D L+F FEGSLEAVTWP+RL+ I F Sbjct: 30 GPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAF 163
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 176 bits (446), Expect = 3.800e-45 Identity = 89/123 (72.36%), Postives = 101/123 (82.11%), Query Frame = 1 Query: 1 GTSHSLCLKALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAV 369 G S S CL AL++A++ETC+G SWYTSTKELQLASLEFC+ CR +TLHLKVDA PRRLLA ADAPPPHP+ LCRTRVPRLRARRVTW M AAEL P+FA+TDVDCL+F E SLEA+ Sbjct: 107 GPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFGET---SLEAL 226
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE) HSP 1 Score: 169 bits (427), Expect = 2.010e-42 Identity = 85/116 (73.28%), Postives = 91/116 (78.45%), Query Frame = 1 Query: 55 CDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRIGF 402 CDG WYTSTKELQ ASLEFCI CRK +TL L+VD TPR LLAA DAP PH KR CRTRVPRLRARRV WNMPTA EL+ P+FAL DV L+F FEGSLE+V WPQRLK I F Sbjct: 2 CDGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDF 117
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI) HSP 1 Score: 132 bits (331), Expect = 2.430e-30 Identity = 77/134 (57.46%), Postives = 89/134 (66.42%), Query Frame = 1 Query: 1 GTSHSLCLKALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKR-LCRTRVPRLRAR-RVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRI 396 G S CL A++VA+ ETCDG SWYTSTKELQLASL FC CR +T+HLKVD PRRLLAAADAPPP + + TR P A V + E +FA+TDVD LEF DFEG+LEAV WP+ LK I Sbjct: 130 GPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASEAAVSDTRAPTHSASCDVEHADSSGIEEPCTVFAMTDVDHLEFGWDFEGNLEAVAWPRWLKTI 263
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: D8LCG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG0_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 7.100e-19 Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1 Query: 976 SDFNRPVGSSVWPASLQRLTLGGHFRQSLQGLGNWMPNLEALRLLDYHSDSRT-SLLRGIEWPKRL 1170 S+FN+ +G S WP SL+RLTLG FRQSLQGLG WMPNLE+LRLL+++ D + SLLR IEWPK L Sbjct: 5 SEFNQRIGRSAWPPSLRRLTLGHKFRQSLQGLGTWMPNLESLRLLEWYVDLQNDSLLRRIEWPKGL 70 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig992.21565.1 >prot_Ecto-sp13_S_contig992.21565.1 ID=prot_Ecto-sp13_S_contig992.21565.1|Name=mRNA_Ecto-sp13_S_contig992.21565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=383bp MDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAAback to top mRNA from alignment at Ecto-sp13_S_contig992:775..2898+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig992.21565.1 ID=mRNA_Ecto-sp13_S_contig992.21565.1|Name=mRNA_Ecto-sp13_S_contig992.21565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2124bp|location=Sequence derived from alignment at Ecto-sp13_S_contig992:775..2898+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig992:775..2898+ >mRNA_Ecto-sp13_S_contig992.21565.1 ID=mRNA_Ecto-sp13_S_contig992.21565.1|Name=mRNA_Ecto-sp13_S_contig992.21565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1149bp|location=Sequence derived from alignment at Ecto-sp13_S_contig992:775..2898+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |