mRNA_Ecto-sp13_S_contig992.21565.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig992.21565.1
Unique NamemRNA_Ecto-sp13_S_contig992.21565.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 3.990e-59
Identity = 190/392 (48.47%), Postives = 216/392 (55.10%), Query Frame = 1
Query:    1 GTSHSLCLKALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRIGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLKIRGLSNFDQPIGGVLPTSXXXXXXXXXXXXXXXDVXXXXXXXXXNLGFVFDHPIQRVVXXXXXXXXTVNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFVFFKNEGNSMLSLGSDFNRPVGSSVWPASLQRLTLGGHFRQSLQGLGNWMPNLEALRLLDYHSDSRT--SLLRGIEWPKRL 1170
            G +   CL A+IVA++ET DG SWYTSTKE QLASLEFCI CR  +TL LKVD+ TPRRLLAAADAPPPHPKRLC TRVPRLRARRVTW++PTAA LR+ ++++ D D LEF   FE SLEAV WP+RLK +                                                                  K    S FDQPI GV+                               G   +       XXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    F   + E    + + S FNR +G+S WP ++ RLTLG +FRQSLQ LG WMPNLE   LL +  DS T  S LRGIEWPK L
Sbjct:    6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTV---------------------------------------------------------EVSGIAEVAKFHDKSLFDQPIAGVV---------------------WPDTLEQLTFGLFLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVCFGV-RQEVLGDVVVTSKFNRXIGASAWPKAMHRLTLGQNFRQSLQELGTWMPNLETFHLLHHIHDSGTEDSFLRGIEWPKGL 318          
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 8.160e-59
Identity = 203/397 (51.13%), Postives = 237/397 (59.70%), Query Frame = 1
Query:    1 GTSHSLCLKALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRIGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLKIRGLSNFDQPIGGV-LPTSXXXXXXXXXXXXXXXDVXXXXXXXXXNLGFVFDHPIQRVVXXXXXXXXTVN--GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFVFFKNE--GNSMLSLGSDFNRPVGSSVWPASLQRLTLGGHFRQSLQGLGNWMPNLEALRLLDYHSDSR--TSLLRGIEWPKRL 1170
            G +   CL+ALIVA++ETCDG SWYTSTKELQLASL+FCI CR C+T+HL VD   PRRLLA+ADAPPPHPKRLC TRVPRLR+RRVTWNMPTAA+LR P+FA+TD++ LEF + F  SLEAV WP+ L+ + F                                                             + +   G  +F+QPI  V  P S            XXX  XXXXXXXXX              XXXXXXXX     G     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    + +E  GN M+ + ++F++P+GSSV PA L+RL LG  FRQSLQGLG WMPNLE L LL YH      ++ LR IEWPK L
Sbjct:   45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFL------------------------------------------QNVTFGG--DFNQPIERVKFPASLQQLIFRTSSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFGNRLNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWCDEFAGNGMV-IFANFDQPIGSSVGPALLRRLVLGHMFRQSLQGLGTWMPNLEVLHLLHYHGSGLGDSNFLREIEWPKGL 396          
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 1.720e-57
Identity = 100/134 (74.63%), Postives = 111/134 (82.84%), Query Frame = 1
Query:    1 GTSHSLCLKALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRIGF 402
            G +H+ CL +LIVA++ETCDGTSWYTSTKELQ ASLEFCI CR    +HLKVD   PR LLAAADAPPPHPKRLC TRVPRLRAR VTWNM  AAEL +P+FA+TDVDCLEF   F+GSLEAVTWP+RLK I F
Sbjct:    8 GLTHNPCLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEF 141          
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 1.190e-49
Identity = 241/417 (57.79%), Postives = 261/417 (62.59%), Query Frame = 1
Query:   25 KALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRIGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLKIRGLSNFDQPIGGVLPTSXXXXXXXXXXXXXXXDVXXXXXXXXXNLGFVFDHPIQRVVXXXXXXXXTVNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFVFFKNEGNSMLSLGSDFNRPVGSSVWPASLQRLTLGGHFRQSLQGLGNWMPNLEALRLLDYHSDSRTS-LLRGIEWPKRLPSPDRL*RLELGWGHDSFNCRGLVRSQNWSVLTM 1272
            K LI+A++E CDG  WYTSTKELQLASLEFC+ CRK + L LKVDA TPR LLAA DAPPPH KR CRTRVPRLRARRV WNMPTA ELR  MFAL DV+CL F   F GSLEAV WP  LK+I F       XXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    +S               DV XXXXXXXX          +    XXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       EG     + S FN+ V    WP S++RLTLG  F++SLQGLG  MPNLEA  LLD+ + S +   LRGIEWPK L          L      FNCRGL   +   V+ M
Sbjct:   19 KDLILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIFFSSEFNQXXXXXXXXASLQKLDLENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLKE------------DVEXXXXXXXXXXXXXXXXXXEWATFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMHDGEGFENAVMLSAFNQRVDMCEWPVSMRRLTLGHKFKESLQGLGTRMPNLEAFHLLDHRNGSGSEDSLRGIEWPKVLRHLVVFSNSSLDGVVIPFNCRGLASLKRSPVVVM 423          
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.410e-48
Identity = 94/134 (70.15%), Postives = 107/134 (79.85%), Query Frame = 1
Query:    1 GTSHSLCLKALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRIGF 402
            G + S CLK L VA++ETCDG SWYTSTKELQLASLE C+ CR  +TLHL VDA TPRRLLAAADAP PHPKRLC TRVPRLRARR TWN+PTA+ +R  +FA  DVD LEF + F GSL+A+ WP+RLK I F
Sbjct:  130 GPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEF 263          
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 2.560e-46
Identity = 94/134 (70.15%), Postives = 105/134 (78.36%), Query Frame = 1
Query:    1 GTSHSLCLKALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRIGF 402
            G + + CL A+ VA+ ET DG SWYTSTKELQLASLEFC+ CR  +TLHL VD   PR LLAAAD PP HPKRL R RVPRLRAR VTWNMPTAAELR P+FAL D+D L+F   FEGSLEAVTWP+RL+ I F
Sbjct:   30 GPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAF 163          
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 3.800e-45
Identity = 89/123 (72.36%), Postives = 101/123 (82.11%), Query Frame = 1
Query:    1 GTSHSLCLKALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAV 369
            G S S CL AL++A++ETC+G SWYTSTKELQLASLEFC+ CR  +TLHLKVDA  PRRLLA ADAPPPHP+ LCRTRVPRLRARRVTW M  AAEL  P+FA+TDVDCL+F E    SLEA+
Sbjct:  107 GPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFGET---SLEAL 226          
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 2.010e-42
Identity = 85/116 (73.28%), Postives = 91/116 (78.45%), Query Frame = 1
Query:   55 CDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRIGF 402
            CDG  WYTSTKELQ ASLEFCI CRK +TL L+VD  TPR LLAA DAP PH KR CRTRVPRLRARRV WNMPTA EL+ P+FAL DV  L+F   FEGSLE+V WPQRLK I F
Sbjct:    2 CDGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDF 117          
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 2.430e-30
Identity = 77/134 (57.46%), Postives = 89/134 (66.42%), Query Frame = 1
Query:    1 GTSHSLCLKALIVAMDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAADAPPPHPKR-LCRTRVPRLRAR-RVTWNMPTAAELRHPMFALTDVDCLEFDEDFEGSLEAVTWPQRLKRI 396
            G   S CL A++VA+ ETCDG SWYTSTKELQLASL FC  CR  +T+HLKVD   PRRLLAAADAPPP  +  +  TR P   A   V     +  E    +FA+TDVD LEF  DFEG+LEAV WP+ LK I
Sbjct:  130 GPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASEAAVSDTRAPTHSASCDVEHADSSGIEEPCTVFAMTDVDHLEFGWDFEGNLEAVAWPRWLKTI 263          
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Match: D8LCG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG0_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 7.100e-19
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1
Query:  976 SDFNRPVGSSVWPASLQRLTLGGHFRQSLQGLGNWMPNLEALRLLDYHSDSRT-SLLRGIEWPKRL 1170
            S+FN+ +G S WP SL+RLTLG  FRQSLQGLG WMPNLE+LRLL+++ D +  SLLR IEWPK L
Sbjct:    5 SEFNQRIGRSAWPPSLRRLTLGHKFRQSLQGLGTWMPNLESLRLLEWYVDLQNDSLLRRIEWPKGL 70          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig992.21565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JUA5_9PHAE3.990e-5948.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF9_9PHAE8.160e-5951.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH81_ECTSI1.720e-5774.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRK5_9PHAE1.190e-4957.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPY7_9PHAE1.410e-4870.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ4_9PHAE2.560e-4670.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI3.800e-4572.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYF0_9PHAE2.010e-4273.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL5_ECTSI2.430e-3057.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCG0_ECTSI7.100e-1966.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig992contigEcto-sp13_S_contig992:775..2898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2124
Hectar predicted targeting categoryother localisation
Exons1
Cds size1149
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464252.8034525-UTR-Ecto-sp13_S_contig992:774..8161681464252.8034525-UTR-Ecto-sp13_S_contig992:774..816Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig992 775..816 +
1681464252.8281653-UTR-Ecto-sp13_S_contig992:1965..28981681464252.8281653-UTR-Ecto-sp13_S_contig992:1965..2898Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig992 1966..2898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464252.8163037-CDS-Ecto-sp13_S_contig992:816..19651681464252.8163037-CDS-Ecto-sp13_S_contig992:816..1965Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig992 817..1965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig992.21565.1prot_Ecto-sp13_S_contig992.21565.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig992 817..1965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig992.21565.1

>prot_Ecto-sp13_S_contig992.21565.1 ID=prot_Ecto-sp13_S_contig992.21565.1|Name=mRNA_Ecto-sp13_S_contig992.21565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=383bp
MDETCDGTSWYTSTKELQLASLEFCIECRKCKTLHLKVDATTPRRLLAAA
DAPPPHPKRLCRTRVPRLRARRVTWNMPTAAELRHPMFALTDVDCLEFDE
DFEGSLEAVTWPQRLKRIGFSESFNEPIDLLEWPPSLQEMIFGQEFNQPL
ERMKFPASLETIIFSEEFNQPIERVRFPASLRQLKIRGLSNFDQPIGGVL
PTSLQQLDLRTRFNQPIQDVLWPASLQKLNLGFVFDHPIQRVVFPASLQE
LTVNGGFHQPIEGVLWRDSLQRLVLGWRFNHSIDNVRLLASLQEVTFVFF
KNEGNSMLSLGSDFNRPVGSSVWPASLQRLTLGGHFRQSLQGLGNWMPNL
EALRLLDYHSDSRTSLLRGIEWPKRLPSPDRL*
back to top

mRNA from alignment at Ecto-sp13_S_contig992:775..2898+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig992.21565.1 ID=mRNA_Ecto-sp13_S_contig992.21565.1|Name=mRNA_Ecto-sp13_S_contig992.21565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2124bp|location=Sequence derived from alignment at Ecto-sp13_S_contig992:775..2898+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAACCAGTCATAGCTTGTGCTTGAAAGCCCTAATCGTTGCTATGGACGA GACGTGCGACGGCACGAGTTGGTACACGTCGACCAAGGAGCTGCAGCTGG CGTCCTTGGAGTTCTGCATCGAGTGCAGGAAATGCAAGACGTTGCATTTG AAAGTCGACGCGACAACACCACGTAGGCTGTTGGCCGCTGCAGATGCCCC CCCGCCGCACCCGAAACGACTGTGTCGGACACGCGTGCCACGGCTACGAG CGCGCCGTGTCACATGGAACATGCCGACAGCAGCGGAATTGAGACATCCA ATGTTTGCATTGACGGACGTGGACTGCCTGGAGTTTGATGAGGACTTCGA AGGCAGCCTCGAGGCTGTCACATGGCCGCAACGGCTGAAAAGGATAGGTT TTAGCGAGTCTTTCAACGAGCCTATCGACCTGCTAGAGTGGCCACCATCC CTGCAGGAGATGATCTTCGGACAAGAGTTCAACCAGCCCCTCGAACGGAT GAAGTTTCCGGCATCGCTGGAGACGATCATCTTCTCGGAAGAGTTCAACC AACCAATCGAACGTGTCCGGTTTCCGGCATCGCTACGGCAGCTGAAAATC CGCGGTTTGTCAAATTTCGACCAACCGATTGGTGGTGTTCTGCCGACTTC GCTGCAGCAGCTTGACCTAAGAACACGCTTCAACCAGCCCATACAAGATG TCTTGTGGCCGGCATCCCTGCAGAAGCTCAATTTGGGCTTCGTGTTCGAC CATCCAATCCAGCGGGTTGTTTTCCCGGCATCGCTGCAAGAGCTAACCGT CAACGGGGGCTTTCACCAGCCCATTGAGGGAGTACTGTGGCGAGATTCCC TTCAGAGGCTCGTTTTGGGATGGAGGTTCAACCATTCAATTGACAATGTA AGGTTGCTGGCGTCATTGCAAGAGGTTACGTTTGTTTTTTTTAAGAACGA AGGCAACAGCATGCTTTCATTAGGCTCAGACTTCAACCGGCCTGTCGGCA GCAGTGTTTGGCCTGCATCGCTCCAGCGACTCACACTAGGCGGACATTTC AGGCAGTCACTGCAAGGACTGGGAAATTGGATGCCCAACCTTGAGGCGCT TCGCCTCCTTGACTATCATTCAGATTCCCGTACTAGCCTTCTCCGCGGAA TCGAATGGCCTAAGCGCCTTCCGTCACCTGACCGTCTATGAAGACTCGAA CTTGGATGGGGTCACGATTCCTTCAACTGCAGAGGTCTTGTACGCTCACA AAATTGGTCAGTCCTAACAATGACTTTGGTCCATACCTGGAGTATTGATT GTGAAGGCAGGAGTGGTGGTGTCGGCAGTCAAGCGCATCTCGCGTCGATT CCGCAGGGAGACATTGTTTGGTGGATGGCGCGTTGGAGCTTGATCAACTA GAGTGCTTGGAGTACGGCAAACTATTTCCTGCTCGATGCAGTCAGCGTCG ATTTGTCTACTGCGGGGTTGAGGAGGATGTGTTCTTCGAGGTTTCTGTTA GGCGGGGGGTGTATTTTGTGTCAGCTCGGCATGCAGTATAGTATCCAGTG TCTACGTGATCGAGAGGTATCGTACCTTGATTTGGTGGAGTATCCGACAG AGTCGGCATCTGCGGTATCCGTCAACATTAGCACTACGGATTCGCCACTC CTGTGAGTGTCAATACGTGTTGATATTTTTCCCTGTTGCCCTATCAAGTA CGTCCTCTTCGTACCTCTTTATGGGGAGGATATGATTTGCCATTATGGGG CGTCATGACCCACGACAAAATCTCAACAAAACTGGTGAAAGCTTGTGAGT GTGTCGGATTCGGGTTTGTTTCGCTTCTCCTAAATGGTTTCGTCGCATCG TCAACAGAACAAGTGAACAACCCCGAGGTGCCTTTCAGTCTAATGGTTCA GCGACCTTCTAGCTTTTGACGAGGCGCCGGTTACCAATGTCGCGGTGACG ACAATGTTGAGGCCCATACCAAATGAACGGTGCCTAACGGTGAGGGCAGC TTAGCCCTATTGCGGGTGGCTGGAGATATTTGTCGGGACCTTCCTCATCT CCGATGGCTAAGTGCTTTAGAACTTTTACAACATCAAGAACTGTTTGATA TTTATAATTTACCTTAGAGTTGAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig992:775..2898+

>mRNA_Ecto-sp13_S_contig992.21565.1 ID=mRNA_Ecto-sp13_S_contig992.21565.1|Name=mRNA_Ecto-sp13_S_contig992.21565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1149bp|location=Sequence derived from alignment at Ecto-sp13_S_contig992:775..2898+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAGACGTGCGACGGCACGAGTTGGTACACGTCGACCAAGGAGCT
GCAGCTGGCGTCCTTGGAGTTCTGCATCGAGTGCAGGAAATGCAAGACGT
TGCATTTGAAAGTCGACGCGACAACACCACGTAGGCTGTTGGCCGCTGCA
GATGCCCCCCCGCCGCACCCGAAACGACTGTGTCGGACACGCGTGCCACG
GCTACGAGCGCGCCGTGTCACATGGAACATGCCGACAGCAGCGGAATTGA
GACATCCAATGTTTGCATTGACGGACGTGGACTGCCTGGAGTTTGATGAG
GACTTCGAAGGCAGCCTCGAGGCTGTCACATGGCCGCAACGGCTGAAAAG
GATAGGTTTTAGCGAGTCTTTCAACGAGCCTATCGACCTGCTAGAGTGGC
CACCATCCCTGCAGGAGATGATCTTCGGACAAGAGTTCAACCAGCCCCTC
GAACGGATGAAGTTTCCGGCATCGCTGGAGACGATCATCTTCTCGGAAGA
GTTCAACCAACCAATCGAACGTGTCCGGTTTCCGGCATCGCTACGGCAGC
TGAAAATCCGCGGTTTGTCAAATTTCGACCAACCGATTGGTGGTGTTCTG
CCGACTTCGCTGCAGCAGCTTGACCTAAGAACACGCTTCAACCAGCCCAT
ACAAGATGTCTTGTGGCCGGCATCCCTGCAGAAGCTCAATTTGGGCTTCG
TGTTCGACCATCCAATCCAGCGGGTTGTTTTCCCGGCATCGCTGCAAGAG
CTAACCGTCAACGGGGGCTTTCACCAGCCCATTGAGGGAGTACTGTGGCG
AGATTCCCTTCAGAGGCTCGTTTTGGGATGGAGGTTCAACCATTCAATTG
ACAATGTAAGGTTGCTGGCGTCATTGCAAGAGGTTACGTTTGTTTTTTTT
AAGAACGAAGGCAACAGCATGCTTTCATTAGGCTCAGACTTCAACCGGCC
TGTCGGCAGCAGTGTTTGGCCTGCATCGCTCCAGCGACTCACACTAGGCG
GACATTTCAGGCAGTCACTGCAAGGACTGGGAAATTGGATGCCCAACCTT
GAGGCGCTTCGCCTCCTTGACTATCATTCAGATTCCCGTACTAGCCTTCT
CCGCGGAATCGAATGGCCTAAGCGCCTTCCGTCACCTGACCGTCTATGA
back to top