mRNA_Ecto-sp13_S_contig9919.21564.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Match: D8LHL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL8_ECTSI) HSP 1 Score: 209 bits (533), Expect = 4.740e-58 Identity = 122/176 (69.32%), Postives = 136/176 (77.27%), Query Frame = 3 Query: 132 FFLLNRINELRRDGAIKHQQERVHQAARG*QAMTPAENTQFVSATRIGISGMEIS*FLAEPGELKVVAIDTGAGLVRLIPDDGGVVIATVQPHAMVQQDENLLIYHSTKQMRIAGSRFKEGMEASQDTSSLSMALWVLNAKASPGTVEFGWLGVLNGRKVATVFEDPSIQASNTEI 659 FF+L RIN+LR DGAIKH QERV QAAR +AMT AE QFVSATRI IS M++S FLAEP ELKVVAIDT AGL RL +DGGVV+ TV+P VQQ ENLLIY STK++RIAGS F+E ME D S L MAL V + KASPGTV+FG LG+L KVATVFED SIQA NTEI Sbjct: 297 FFMLKRINQLREDGAIKHYQERVDQAAREWRAMTSAEKAQFVSATRIEISCMKMSCFLAEPRELKVVAIDTDAGLFRLNHEDGGVVVITVKPGITVQQYENLLIYQSTKEVRIAGSGFEENME---DPSLLPMALLVSSVKASPGTVDFGLLGLLPIGKVATVFEDASIQARNTEI 469
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE) HSP 1 Score: 168 bits (426), Expect = 1.920e-43 Identity = 106/184 (57.61%), Postives = 114/184 (61.96%), Query Frame = 3 Query: 249 QFVSATRIGISGMEIS*FLAEPGELKVVAIDTGAGLVRLIPDDGGVVIATVQPHAMVQQDENLLIYHSTKQMRIAGS------------RFKEGMEAS-----------------------------------QDTSSLSMALWVLNAKASPGTVEFGWLGVLNGRKVATVFEDPSIQASNTEI 659 QFVSATRI IS ME+S FLAEPGELKVVAIDTGAG VRL P+DGGVVIATV+PH +QQDENLLIY STKQ+RIAGS + M S Q S L MAL V + KASPGTV+FGWLGVLNGRKVA VFEDPSIQA NTEI Sbjct: 136 QFVSATRIEISCMEMSCFLAEPGELKVVAIDTGAGSVRLNPEDGGVVIATVKPHIKLQQDENLLIYQSTKQIRIAGSGAARLLPNGRYTTLQFFMSPSSIPPTVFGLTIDQCVTPHQLVKVSLNLPQPLSVLPQGPSFLPMALLVSSVKASPGTVDFGWLGVLNGRKVAIVFEDPSIQARNTEI 319
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Match: A0A6H5JWP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP2_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 8.480e-19 Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 3 Query: 324 KVVAIDTGAGLVRLIPDDGG-VVIATVQPHAMVQQDENLLIYHSTKQMRIAGSRFKEGMEASQDTSSLSMALWVLNAKASPGTVEFGWLGVLNGRKVATVFEDPSIQASNTEI 659 +VVAIDTGAGLV+L P+ GG VV+AT +P V+QDE+LL+Y STKQ+RI GS F++ E S+ + G L+GRKVATVFEDP++QAS+TEI Sbjct: 8 EVVAIDTGAGLVQLNPEQGGGVVVATAKPEINVEQDEDLLVYQSTKQIRIGGSGFEDVTEPSRRR-----------------RLGQGGFSTLHGRKVATVFEDPTVQASDTEI 103
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Match: D8LG95_ECTSI (Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG95_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 2.390e-12 Identity = 59/155 (38.06%), Postives = 78/155 (50.32%), Query Frame = 3 Query: 309 EPGELKVVAIDTGAGLVRLIPDDGGVVIATVQP----HAM-VQQDENLLIYHSTKQMRIAGSRF---------------------------------KEGMEASQDTSSLSMALWVLNAKASPGTVEFGWLGVLNGRKVATVFEDPSIQASNTEI 659 EPG LK+VAI+TG G + L DDGG+VIA VQ H + VQ E+L +Y S+K +I+GS F EG + ++ S+L AL +L A + G V G G KVATVFEDPS++AS+ EI Sbjct: 182 EPGPLKIVAINTGGGRLSLNSDDGGIVIAEVQADLDHHGVTVQGHESLDLYQSSKSFQISGSGFVDGTKVRFANALRGGGTNFTITDSQPELLTLELAEGSKWRKNPSALPGALVLLAADSGDGWVPLGPTQAKAGSKVATVFEDPSVEASDVEI 336
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Match: D7FRJ9_ECTSI (Trypsin domain protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRJ9_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 8.790e-10 Identity = 56/154 (36.36%), Postives = 72/154 (46.75%), Query Frame = 3 Query: 309 EPGELKVVAIDTGAGLVRLIPDDGGVVIATVQP----HAM-VQQDENLLIYHSTKQMRIAGSRF--------------------------------KEGMEASQDTSSLSMALWVLNAKASPGTVEFGWLGVLNGRKVATVFEDPSIQASNTEI 659 EPG LK+VAIDTGAG + L D GGV IA +Q H++ V+ E + +Y S+K + IAG F +EG + QD S L +L A A G V G GRKVAT+FEDP ++ S EI Sbjct: 131 EPGPLKLVAIDTGAGRLLLREDLGGVTIAEMQADMKGHSLSVETHEEVTMYQSSKVLTIAGQGFNSSYTRFRFANSLVEGKNFTQVVTPESATFALEEGSKWRQDAPSWPAPLVLLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEI 284
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Match: D7FRK3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK3_ECTSI) HSP 1 Score: 67.8 bits (164), Expect = 3.520e-9 Identity = 54/154 (35.06%), Postives = 72/154 (46.75%), Query Frame = 3 Query: 309 EPGELKVVAIDTGAGLVRLIPDDGGVVIATVQP----HAM-VQQDENLLIYHSTKQMRIAGSRF--------------------------------KEGMEASQDTSSLSMALWVLNAKASPGTVEFGWLGVLNGRKVATVFEDPSIQASNTEI 659 EPG LK+VAIDTGAG + L D GGV IA +Q H++ V+ E + +Y S+K + IAG F +EG + QD + L +L A A G V G GRKVAT++EDP ++ S EI Sbjct: 131 EPGALKLVAIDTGAGRLLLREDLGGVTIAEMQADLNRHSLSVETHEEVTMYQSSKVLTIAGQGFNTGNTRFRFGNGLLEGKNFTQIVTPESATFTLEEGSKWRQDAPAWPAPLILLAADAGDGFVPLGATIAKTGRKVATIYEDPRLEPSLQEI 284
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Match: A0A835YLV2_9STRA (Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV2_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 4.110e-8 Identity = 62/179 (34.64%), Postives = 81/179 (45.25%), Query Frame = 3 Query: 243 NTQFVSATRIGISGMEIS*FLAE-PGELKVVAIDTGAGLVRLIPDDGGVVIATVQP----HAM-VQQDENLLIYHSTKQMRIAGS---------RFKEGMEASQ-------------------------DTSSLSMALWVLNAKASPGTVEFGWLGVLNGRKVATVFEDPSIQASNTEI 659 +TQ VS T+I + + +E PG LK+VAIDTG G + L PD G +IA VQ H + V+ IY ST + I G RF G+ + +L AL +L A A G V G V +GRKVATV+EDPS++AS EI Sbjct: 163 STQVVSPTQILLVKRYGKMWRSEGPGPLKLVAIDTGGGRLPLDPDTKGRIIAEVQADREGHGVTVETHVEKHIYQSTPTLEIDGVGFNPDGTQLRFANGLRGGGANYTASTVTPTRMTLDLAPGSKWRGNVDNLPGALVLLAADAGAGFVALGATAVKSGRKVATVYEDPSVKASEVEI 341 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9919.21564.1 >prot_Ecto-sp13_S_contig9919.21564.1 ID=prot_Ecto-sp13_S_contig9919.21564.1|Name=mRNA_Ecto-sp13_S_contig9919.21564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp MVQQDENLLIYHSTKQMRIAGSRFKEGMEASQDTSSLSMALWVLNAKASPback to top mRNA from alignment at Ecto-sp13_S_contig9919:189..5468+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9919.21564.1 ID=mRNA_Ecto-sp13_S_contig9919.21564.1|Name=mRNA_Ecto-sp13_S_contig9919.21564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5280bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9919:189..5468+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9919:189..5468+ >mRNA_Ecto-sp13_S_contig9919.21564.1 ID=mRNA_Ecto-sp13_S_contig9919.21564.1|Name=mRNA_Ecto-sp13_S_contig9919.21564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9919:189..5468+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |