mRNA_Ecto-sp13_S_contig99157.21562.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig99157.21562.1
Unique NamemRNA_Ecto-sp13_S_contig99157.21562.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig99157.21562.1 vs. uniprot
Match: A0A6H5KMK1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.130e-5
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = -1 
Query:    1 ATLSP-VFQGRYEEAEPLHERSQAIREKVLGPEHP 102
            ATL P   QG+Y EAEPL+ERSQAIREKVLG EHP
Sbjct:    6 ATLCPPACQGKYTEAEPLYERSQAIREKVLGSEHP 40
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BLAST of mRNA_Ecto-sp13_S_contig99157.21562.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.290e-5
Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = -1 
Query:    1 QGRYEEAEPLHERSQAIREKVLGPEHP 81
            QG+Y EAEPL+ERSQAIREK+LGPEHP
Sbjct:  291 QGKYAEAEPLYERSQAIREKMLGPEHP 317
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BLAST of mRNA_Ecto-sp13_S_contig99157.21562.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 3.290e-5
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = -1 
Query:    1 FQGRYEEAEPLHERSQAIREKVLGPEHP 84
            FQG+YEEA PL+ERS AIREKVLGP+HP
Sbjct:  797 FQGKYEEAGPLYERSLAIREKVLGPDHP 824
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BLAST of mRNA_Ecto-sp13_S_contig99157.21562.1 vs. uniprot
Match: A0A6H5JIH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH9_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 4.570e-5
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = -1 
Query:    1 QGRYEEAEPLHERSQAIREKVLGPEHP 81
            QG+ EEAEPLHERSQAIREKVLGPE+P
Sbjct: 1862 QGKGEEAEPLHERSQAIREKVLGPENP 1888
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BLAST of mRNA_Ecto-sp13_S_contig99157.21562.1 vs. uniprot
Match: A0A6H5KLA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA8_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 4.680e-5
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = -1 
Query:    4 QGRYEEAEPLHERSQAIREKVLGPEH 81
            QG+Y EAEPL+ERSQAIREKVLGPEH
Sbjct:   81 QGKYIEAEPLYERSQAIREKVLGPEH 106
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BLAST of mRNA_Ecto-sp13_S_contig99157.21562.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 47.4 bits (111), Expect = 4.960e-5
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = -1 
Query:    1 FQGRYEEAEPLHERSQAIREKVLGPEHP 84
             QG+Y EAEPL+ERSQAI+EKVLG EHP
Sbjct:   17 IQGKYMEAEPLYERSQAIQEKVLGLEHP 44
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BLAST of mRNA_Ecto-sp13_S_contig99157.21562.1 vs. uniprot
Match: D7FWM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWM6_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 7.300e-5
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = -1 
Query:    1 QGRYEEAEPLHERSQAIREKVLGPEHP 81
            QG+YEEAEPL++RSQA  EKVLGPEHP
Sbjct:   45 QGKYEEAEPLYDRSQATPEKVLGPEHP 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig99157.21562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KMK1_9PHAE1.130e-577.14Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KIY6_9PHAE2.290e-585.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJK0_9PHAE3.290e-582.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIH9_9PHAE4.570e-588.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLA8_9PHAE4.680e-588.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3K8_9PHAE4.960e-578.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWM6_ECTSI7.300e-581.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig99157contigEcto-sp13_S_contig99157:143..453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size312
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464252.565021-CDS-Ecto-sp13_S_contig99157:142..4511681464252.565021-CDS-Ecto-sp13_S_contig99157:142..451Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig99157 143..451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig99157.21562.1prot_Ecto-sp13_S_contig99157.21562.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig99157 143..451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig99157.21562.1

>prot_Ecto-sp13_S_contig99157.21562.1 ID=prot_Ecto-sp13_S_contig99157.21562.1|Name=mRNA_Ecto-sp13_S_contig99157.21562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
RVLWAQHLLSDGLRPLMQRLGFLIPPLEDGRQRGRILLQHKSGLVLRWNI
LCSKLPEHRLTFHLAQQQRRPTPPDLLSTIYHRPPREFYWKVLAALTCTL
NNS
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mRNA from alignment at Ecto-sp13_S_contig99157:143..453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig99157.21562.1 ID=mRNA_Ecto-sp13_S_contig99157.21562.1|Name=mRNA_Ecto-sp13_S_contig99157.21562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99157:143..453+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGTGCTCTGGGCCCAGCACCTTCTCTCTGATGGCCTGCGACCGCTCAT
GCAGCGGCTCGGCTTCCTCATACCTCCCCTGGAAGACGGGCGACAGCGTG
GCAGGATCTTGTTGCAGCACAAGTCAGGTCTAGTTCTGCGATGGAACATT
CTCTGCTCGAAGCTTCCAGAACATCGTTTGACATTTCATCTGGCTCAACA
ACAACGCCGCCCAACGCCGCCCGATTTGTTGAGCACCATATACCACAGGC
CGCCAAGAGAGTTCTACTGGAAAGTTCTGGCGGCTCTCACCTGCACTCTC
AATAACTCCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig99157:143..453+

>mRNA_Ecto-sp13_S_contig99157.21562.1 ID=mRNA_Ecto-sp13_S_contig99157.21562.1|Name=mRNA_Ecto-sp13_S_contig99157.21562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99157:143..453+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGTGCTCTGGGCCCAGCACCTTCTCTCTGATGGCCTGCGACCGCTCAT
GCAGCGGCTCGGCTTCCTCATACCTCCCCTGGAAGACGGGCGACAGCGTG
GCAGGATCTTGTTGCAGCACAAGTCAGGTCTAGTTCTGCGATGGAACATT
CTCTGCTCGAAGCTTCCAGAACATCGTTTGACATTTCATCTGGCTCAACA
ACAACGCCGCCCAACGCCGCCCGATTTGTTGAGCACCATATACCACAGGC
CGCCAAGAGAGTTCTACTGGAAAGTTCTGGCGGCTCTCACCTGCACTCTC
AATAACTCC
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