mRNA_Ecto-sp13_S_contig9912.21558.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9912.21558.1 vs. uniprot
Match: A0A6H5JTZ0_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ0_9PHAE) HSP 1 Score: 179 bits (453), Expect = 3.320e-49 Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 1 Query: 1 LKRSKSQVAQTIVADHVQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDGKGLRGGPPGHPMHGHGHGPGGRF 279
LKRSKSQVA TIVADHVQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRD KG RGGPPGHPMHGHGHGPGGRF
Sbjct: 262 LKRSKSQVAGTIVADHVQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDAKGPRGGPPGHPMHGHGHGPGGRF 354
BLAST of mRNA_Ecto-sp13_S_contig9912.21558.1 vs. uniprot
Match: D8LFK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK7_ECTSI) HSP 1 Score: 168 bits (426), Expect = 5.670e-47 Identity = 87/94 (92.55%), Postives = 88/94 (93.62%), Query Frame = 1 Query: 1 LKRSKSQVAQTIVADHVQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDGKGLRGGPPGHPMHGHGHGPGGRFG 282
LKRSKSQVA+TIVADHVQRLL LNGVELP DEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDGKG RGGPPGHPMHGH PGGRFG
Sbjct: 237 LKRSKSQVARTIVADHVQRLLILNGVELPGDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDGKGPRGGPPGHPMHGHXXXPGGRFG 330 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9912.21558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9912.21558.1 >prot_Ecto-sp13_S_contig9912.21558.1 ID=prot_Ecto-sp13_S_contig9912.21558.1|Name=mRNA_Ecto-sp13_S_contig9912.21558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=196bp LKRSKSQVAQTIVADHVQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRLback to top mRNA from alignment at Ecto-sp13_S_contig9912:5512..6101- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9912.21558.1 ID=mRNA_Ecto-sp13_S_contig9912.21558.1|Name=mRNA_Ecto-sp13_S_contig9912.21558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=590bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9912:5512..6101- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9912:5512..6101- >mRNA_Ecto-sp13_S_contig9912.21558.1 ID=mRNA_Ecto-sp13_S_contig9912.21558.1|Name=mRNA_Ecto-sp13_S_contig9912.21558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9912:5512..6101- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |