Homology
BLAST of mRNA_Ecto-sp13_S_contig9909.21553.1 vs. uniprot
Match: A0A6H5L9K9_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9K9_9PHAE) HSP 1 Score: 406 bits (1043), Expect = 4.770e-125 Identity = 240/267 (89.89%), Postives = 244/267 (91.39%), Query Frame = 1 Query: 1 PTPNSDARQDHASSKPRDKNVIISGASLLNPSDARHRRSRSRAASRGGASGTLVSAGDEDXXXXXXXXXXXXXXXXXXXGRGGQFQAPRLSMIENVVHPREGAAPPPAPVPTEIWKERAQSRGNLVKAMVASQHLSSSSGTGLRGASPRSNTTYMGNNFQNTSGMVGAGSTAGGRATTGIVPPETEVPLPYAEDVLALQGAAERGIKKFEVAPLSVSGQQPPRVQTARRPVVQAADNFAAEDSADEDSDETGSIISAISAGSFQPRR 801
P DARQDHASSKPRDKNVIISGASLLNPS+ RHRRSRSRAASRGGASGT V AGDE XXXXXXXXXXXXX RGGQFQAPRL+MIENVVHPREGAAPPPAPVPTEIW ERAQSRGNLVKAMVASQHLSSSSGTGLRGASPRSNT Y G+N+ NTSGM GAGSTAGGR TTGIV PETEVPLPYAEDVLALQGAAERGIKKFEVAPLSVSGQQPPRVQTARR VVQAADNFAAEDSADEDSDETGSIISAISAGSFQPRR
Sbjct: 2517 PEQRGDARQDHASSKPRDKNVIISGASLLNPSNDRHRRSRSRAASRGGASGTHVFAGDEXXXXXXXXXXXXXX-------RGGQFQAPRLAMIENVVHPREGAAPPPAPVPTEIWNERAQSRGNLVKAMVASQHLSSSSGTGLRGASPRSNTAYGGSNYHNTSGMAGAGSTAGGRGTTGIVSPETEVPLPYAEDVLALQGAAERGIKKFEVAPLSVSGQQPPRVQTARRAVVQAADNFAAEDSADEDSDETGSIISAISAGSFQPRR 2776
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 1 |
Start | 1 |
Model size | 1064 |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-22_000620.1 |
Cds size | 618 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1681464251.890285-UTR-Ecto-sp13_S_contig9909:237..423 | 1681464251.890285-UTR-Ecto-sp13_S_contig9909:237..423 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig9909 238..423 + |
1681464251.9564447-UTR-Ecto-sp13_S_contig9909:3033..3293 | 1681464251.9564447-UTR-Ecto-sp13_S_contig9909:3033..3293 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig9909 3034..3293 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1681464251.9095206-CDS-Ecto-sp13_S_contig9909:423..618 | 1681464251.9095206-CDS-Ecto-sp13_S_contig9909:423..618 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9909 424..618 + |
1681464251.9213166-CDS-Ecto-sp13_S_contig9909:1272..1488 | 1681464251.9213166-CDS-Ecto-sp13_S_contig9909:1272..1488 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9909 1273..1488 + |
1681464251.9327443-CDS-Ecto-sp13_S_contig9909:2121..2199 | 1681464251.9327443-CDS-Ecto-sp13_S_contig9909:2121..2199 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9909 2122..2199 + |
1681464251.9441352-CDS-Ecto-sp13_S_contig9909:2904..3033 | 1681464251.9441352-CDS-Ecto-sp13_S_contig9909:2904..3033 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9909 2905..3033 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9909.21553.1 >prot_Ecto-sp13_S_contig9909.21553.1 ID=prot_Ecto-sp13_S_contig9909.21553.1|Name=mRNA_Ecto-sp13_S_contig9909.21553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=206bp
MQQQPQQQPQQQQEQEQGRGGQFQAPRLSMIENVVHPREGAAPPPAPVPT EIWKERAQSRGNLVKAMVASQHLSSSSGTGLRGASPRSNTTYMGNNFQNT SGMVGAGSTAGGRATTGIVPPETEVPLPYAEDVLALQGAAERGIKKFEVA PLSVSGQQPPRVQTARRPVVQAADNFAAEDSADEDSDETGSIISAISAGS FQPRR* back to topmRNA from alignment at Ecto-sp13_S_contig9909:238..3293+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig9909.21553.1 ID=mRNA_Ecto-sp13_S_contig9909.21553.1|Name=mRNA_Ecto-sp13_S_contig9909.21553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9909:238..3293+ (Ectocarpus species13 EcNAP12_S_4_19m) CCTACCCCGAACAGCGATGCCAGACAAGATCACGCCTCCTCCAAGCCGAG
AGACAAGAACGTCATCATCTCGGGGGCCTCGCTGCTAAACCCTTCAGACG
CCCGCCACCGGAGGTCCCGGTCTCGCGCCGCGTCCAGGGGCGGCGCCTCG
GGCACTCTCGTCTCCGCCGGCGACGAGGATCAGGAGATGCAACAGCAGCC
GCAGCAGCAGCCGCAGCAGCAGCAGGAGCAGGAGCAGGGGCGCGGGGGGC
AGTTCCAAGCCCCGAGGCTCTCCATGATAGAAAACGTCGTGCATCCGCGG
GAGGGAGCCGCGCCGCCCCCCGCCCCCGTGCCCACGGAGATCTGGAAGGA
GCGTGCCCAGAGTCGGGGTAACTTGGTCAAGGTGTGTCTGGAAGTTGGTT
CTGTGTGCGTCCGGAGTATCTTGGTTAAGGTGTGTCTGGAAGGTGTTTCT
GTTCGCGTCCAGGGTATCTTGGTCAAGGTGTGTCGGCAAGTTAGTTGTGA
TGGCATCCGCGGTAACTTGGGTCAAAGGAGTTGTTCATGTGCACGTGCGT
GTGATGCGGTGCTCTGGACTAATGCTAGTCTCGTTTGCTGCGTGGTGTTG
TCTTCTTCTGTGGGTGCAAGGCGTTGTGGGGAGGGCGTTTTATTGGTGCC
GCCGTGGTTTCGGGTGTCGTTTAACTCAGTCTCCCGTTGTAGAGGGGGTG
TAGGAGTAGCTCAAGCACTCGCCGATGCTCGAATCGTGAGCTAGCTGCAA
TAGCAACAGCAGCAGCAAACAGCATCTAGTCTGTTTTTGTTGGTGCTTAT
GCTGGCTTGGCAGCTCTTCCGCCGATCACGGCAGCACAGCACACGGGGCC
CCTAGCACTCTGCCAATCACGTGGCTGCTTTAATTGTTCTTCTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTTCTTATGATG
GTTGTCGTCGTTGTAGTCGTCGCTGCTAACCGTTGTCAACGCCTCTCTCG
TGCTGCTCCCCTCCCCCGGAACCGATATCAACAAGGCGATGGTGGCTTCC
CAGCACCTGTCGTCATCGTCGGGGACGGGTCTGCGCGGCGCCTCTCCGCG
GTCCAACACGACCTACATGGGCAACAACTTCCAAAACACTAGCGGCATGG
TGGGGGCTGGCTCCACCGCTGGGGGCAGAGCTACAACAGGGATTGTCCCC
CCGGAGACCGAAGTCCCCCTTCCGTACGCCGAGGACGTGCTAGCGTTGCA
GGTACGTGGGCCATGCTACTGCTTGCATGCGCCGGGATACAGGCTTGGGT
GACCGTCGTAAGCTGTTGGGGTTTCGCCCGGCGGAACTTTGTTTTATTTT
TTTTCTGCCAGGCAGATCAGCCGTTTGCCCTCGGCGAGGATTCTTTTATA
ACACCCAAAAGTTGTCTCTTTTTTCTTTATGTAGAAGGTGTTTGTGCGGT
CACAGAAAGAGTACCCGTTCGAGAGATAATTATTGGCCCAATCGAAATCC
GTGTGTTGTTGAAATTTTTCCTTGCGTCATCTCTTGGAGGTAGTCGCCGG
GAGGCATGCCATCAGCAGAGACGTGCAGCAGCAAGCATCCCACACGGCCG
CGGTGATGAGGCCGGTGGCGTACTGGCCGTCTCCGAAAGGGCAGCGGTCC
CGCTTCAGCATGCCGCCTACGATCATGCGAACTCCCTTCGTAACCTCGAG
CAAGTGTGCATTTATTATTCTGCATTTAGGACGTGAAGTTTTGACAACAC
GCACGACGACGAAACAGCAACACGCACAACTCCCCTCCTTAACTTACCCC
GCCCCCTATTCAACTACTGGCGTATCCTCTTTTTTGTTGTCATGGGGCGT
TTTTTCCCGGCGGGAATGAACATGACGTTGCCAGGGCGCGGCCGAGCGAG
GGATCAAGAAGTTCGAGGTGGCCCCCCTCTCGGTCTCGGGACAACAGCCT
CCAAGGGTACAGGTGCTTAGATTTATTTAACTCGATGGTGCAAGAAAAAT
GCAGCGCCTACACAAGTGAAGCCGCACACTGCTGTACAAGCTTTCCGATA
ACAAGTTCGGTGCACGTGTGTTGTTGTTACTAGCATCTCGATAGGGCTTA
CCGGCTAACCACTGAAAAAACGTCAGTTTCAATTAAGTGTGTAGATTTGG
GTCGTTTTATCTTTTAGTGTTTCCGTCTCCGTTCGAATTTCACATGAACC
CTTTGTGGCGGAAGTGTTGAAGTGGATGGGGAGCATTCCGTCGGGAATGT
GTCCTCGCCAGGCGATGCCCTCCAGTGCTTGCGGTTGAACCGTTTCAGTG
TTTTTTTTTGTGTTTGCTCTCTTGATCGCAGCATCTTACGTAGCCTCTTA
CGTCGTGAACCAAAAAATAAGACCGAACACCCGAAAAAGAACGGCCCAGC
CTCCCTCACCACTAACACTAATGCCCCTGTTTCCTCCGTGAGGTTGTATT
CCATGCACTGAGCGTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCTCCCCCCCCCCACCACACCCCACCAAACCCACCC
CCGCCGGCGCCGTCTCGGGCCGCCCATCCAGACCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCTCCCTCCCCTCCTTGTCGTGAATGCCGTACATAACA
AACGGATTACTCGGCAGACTGCGCGGAGGCCGGTTGTTCAGGCCGCGGAC
AACTTCGCGGCCGAAGATTCCGCCGACGAGGACTCCGACGAGACAGGCTC
CATAATATCCGCAATTTCCGCAGGCAGCTTCCAGCCGCGGCGCTAGGCTG
GTTCGTCCCCAGCAGCAGTCGCAAAAGCATCATCAGCGGCGGCCACTGAG
CCAGCAGCAGTCGACAAAATTTAAGTTCCCGCGAGGGCGGTCCGCTGGCT
CTGATGATGCTTTTAAAGGACCGCCCGACCCAAGAAGAGCGGAAAAAGAA
AGAAGGCCTCCCGCACGATCAAAGTAACATCATACGTTTAGCAGGCTTTG
GCGAAACGTCGATTTGGAGGGAGGTTATGGCCAACAGAGCATTGCGATCA
ATGGCG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig9909:238..3293+ >mRNA_Ecto-sp13_S_contig9909.21553.1 ID=mRNA_Ecto-sp13_S_contig9909.21553.1|Name=mRNA_Ecto-sp13_S_contig9909.21553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9909:238..3293+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGCAACAGCAGCCGCAGCAGCAGCCGCAGCAGCAGCAGGAGCAGGAGCA GGGGCGCGGGGGGCAGTTCCAAGCCCCGAGGCTCTCCATGATAGAAAACG TCGTGCATCCGCGGGAGGGAGCCGCGCCGCCCCCCGCCCCCGTGCCCACG GAGATCTGGAAGGAGCGTGCCCAGAGTCGGGGTAACTTGGTCAAGGCGAT GGTGGCTTCCCAGCACCTGTCGTCATCGTCGGGGACGGGTCTGCGCGGCG CCTCTCCGCGGTCCAACACGACCTACATGGGCAACAACTTCCAAAACACT AGCGGCATGGTGGGGGCTGGCTCCACCGCTGGGGGCAGAGCTACAACAGG GATTGTCCCCCCGGAGACCGAAGTCCCCCTTCCGTACGCCGAGGACGTGC TAGCGTTGCAGGGCGCGGCCGAGCGAGGGATCAAGAAGTTCGAGGTGGCC CCCCTCTCGGTCTCGGGACAACAGCCTCCAAGGGTACAGACTGCGCGGAG GCCGGTTGTTCAGGCCGCGGACAACTTCGCGGCCGAAGATTCCGCCGACG AGGACTCCGACGAGACAGGCTCCATAATATCCGCAATTTCCGCAGGCAGC TTCCAGCCGCGGCGCTAG back to top
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