mRNA_Ecto-sp13_S_contig9905.21549.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9905.21549.1
Unique NamemRNA_Ecto-sp13_S_contig9905.21549.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9905.21549.1 vs. uniprot
Match: D7FPL8_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPL8_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 4.820e-59
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 GINVLKGTGTIVEELEEAQMNLQTMLSMRHVTPFREEAQNELQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKDWAKIMAKATETG 309
            GINVLKGTGTIVEELEEAQMNLQTMLSMRHVTPFREEAQNELQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKDWAKIMAKATETG
Sbjct: 1499 GINVLKGTGTIVEELEEAQMNLQTMLSMRHVTPFREEAQNELQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKDWAKIMAKATETG 1601
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BLAST of mRNA_Ecto-sp13_S_contig9905.21549.1 vs. uniprot
Match: A0A835YLK0_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK0_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.350e-54
Identity = 93/103 (90.29%), Postives = 100/103 (97.09%), Query Frame = 1 
Query:    1 GINVLKGTGTIVEELEEAQMNLQTMLSMRHVTPFREEAQNELQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKDWAKIMAKATETG 309
            G+NVLKGTG I+EELEEAQMNLQTMLSMRHVTPFREEAQ +LQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMP+EAKKFAK+DKDWAK+M KAT+TG
Sbjct: 1498 GVNVLKGTGLIMEELEEAQMNLQTMLSMRHVTPFREEAQEQLQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMPLEAKKFAKVDKDWAKLMQKATDTG 1600
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BLAST of mRNA_Ecto-sp13_S_contig9905.21549.1 vs. uniprot
Match: A0A6H5L5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A5_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 3.580e-52
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 GINVLKGTGTIVEELEEAQMNLQTMLSMRHVTPFREEAQNELQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKDW 276
            GINVLKGTGTIVEELEEAQMNLQTMLSMRHVTPFREEAQNELQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKDW
Sbjct: 1146 GINVLKGTGTIVEELEEAQMNLQTMLSMRHVTPFREEAQNELQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKDW 1237
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BLAST of mRNA_Ecto-sp13_S_contig9905.21549.1 vs. uniprot
Match: A0A7S2D3G8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3G8_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.460e-45
Identity = 75/102 (73.53%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:    1 GINVLKGTGTIVEELEEAQMNLQTMLSMRHVTPFREEAQNELQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKDWAKIMAKATET 306
            GIN+L   G +VEELEE+QMN+QT L+ R V PFREEA   L  LSD+SD LE+W+KV MMWCSLESVFTGGDIAKQMPMEAKKFAK+DKDW K+MAKA ET
Sbjct:    1 GINILAAYGAVVEELEESQMNVQTYLTQRQVAPFREEATELLGKLSDSSDILEQWIKVSMMWCSLESVFTGGDIAKQMPMEAKKFAKVDKDWQKVMAKAFET 102
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BLAST of mRNA_Ecto-sp13_S_contig9905.21549.1 vs. uniprot
Match: A0A7S4K9T7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K9T7_9STRA)

HSP 1 Score: 161 bits (408), Expect = 3.360e-45
Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:    1 GINVLKGTGTIVEELEEAQMNLQTMLSMRHVTPFREEAQNELQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKDWAKIMAKATE 303
            G+ +LK T +++EELEEAQMNLQTML+MRHV PFR  AQ  L  LS+TSDTLERW+KVQMMWC+LESVFTGGDIAKQMP EAKKFAKIDKDWAKIMAKA+E
Sbjct:  378 GVFILKATPSVMEELEEAQMNLQTMLTMRHVAPFRAIAQEMLGSLSETSDTLERWVKVQMMWCALESVFTGGDIAKQMPREAKKFAKIDKDWAKIMAKASE 478
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BLAST of mRNA_Ecto-sp13_S_contig9905.21549.1 vs. uniprot
Match: A0A482S391_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S391_9ARCH)

HSP 1 Score: 165 bits (417), Expect = 3.600e-45
Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:    4 INVLKGTGTIVEELEEAQMNLQTMLSMRHVTPFREEAQNELQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKDWAKIMAKATET 306
            I +L+GT  ++EELEEAQMNLQ ML+MRHV PFRE +Q  LQ LS+TSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDK+WAKIM KA ET
Sbjct: 1373 IQILQGTVGVMEELEEAQMNLQAMLTMRHVGPFRERSQELLQTLSETSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKEWAKIMGKAYET 1473
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BLAST of mRNA_Ecto-sp13_S_contig9905.21549.1 vs. uniprot
Match: A0A024U4G7_9STRA (Uncharacterized protein n=24 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024U4G7_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.730e-44
Identity = 79/100 (79.00%), Postives = 89/100 (89.00%), Query Frame = 1 
Query:    4 INVLKGTGTIVEELEEAQMNLQTMLSMRHVTPFREEAQNELQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKDWAKIMAKATE 303
            + VLKG   +VEELEEAQMNLQTMLSMRHV PF+E AQ +L+ LSDTS+TLERW+KVQM+WCSLESVFTGGDIAKQMP+EAKKF KIDKDWAKIM K+ E
Sbjct: 1440 VPVLKGVVPVVEELEEAQMNLQTMLSMRHVLPFKENAQQKLETLSDTSETLERWIKVQMLWCSLESVFTGGDIAKQMPVEAKKFQKIDKDWAKIMTKSVE 1539
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BLAST of mRNA_Ecto-sp13_S_contig9905.21549.1 vs. uniprot
Match: A0A7S3JVI8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVI8_9STRA)

HSP 1 Score: 162 bits (410), Expect = 3.200e-44
Identity = 77/101 (76.24%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    4 INVLKGTGTIVEELEEAQMNLQTMLSMRHVTPFREEAQNELQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKDWAKIMAKATET 306
            +  L+GTG ++EELEEAQMNLQTML+MRHVTPFREEA  +L  LSD SDTLERW  +Q+MWCSLESVFTGGDIAKQ+PMEAKKF+K+DKDW+KIM KA ET
Sbjct:  202 VPTLQGTGALMEELEEAQMNLQTMLTMRHVTPFREEAAAQLAALSDASDTLERWAHIQLMWCSLESVFTGGDIAKQLPMEAKKFSKVDKDWSKIMNKAAET 302
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BLAST of mRNA_Ecto-sp13_S_contig9905.21549.1 vs. uniprot
Match: A0A662Y1W2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1W2_9STRA)

HSP 1 Score: 161 bits (408), Expect = 5.890e-44
Identity = 79/100 (79.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:    4 INVLKGTGTIVEELEEAQMNLQTMLSMRHVTPFREEAQNELQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKDWAKIMAKATE 303
            + +LKG   IVEELEE QMNLQTMLSMRHV PFRE AQ +L+ LSDTS+TLERW+KVQM+WCSLESVFTGGDIAKQMP+EAKKF KIDKDWAKIM K+ E
Sbjct: 1499 VPILKGVVPIVEELEETQMNLQTMLSMRHVVPFREVAQGKLEQLSDTSETLERWIKVQMLWCSLESVFTGGDIAKQMPVEAKKFQKIDKDWAKIMGKSVE 1598
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BLAST of mRNA_Ecto-sp13_S_contig9905.21549.1 vs. uniprot
Match: A0A3R7BN27_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BN27_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.100e-43
Identity = 78/100 (78.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:    4 INVLKGTGTIVEELEEAQMNLQTMLSMRHVTPFREEAQNELQVLSDTSDTLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKDWAKIMAKATE 303
            + VLKG   +VEELEE QMNLQTMLSMRHV PF+E AQ +L+ LSDTS+TLERW+KVQM+WCSLESVFTGGDIAKQMP+EAKKF KIDKDWAKIM K+ E
Sbjct: 1435 VPVLKGVVPVVEELEETQMNLQTMLSMRHVLPFKEVAQQKLETLSDTSETLERWIKVQMLWCSLESVFTGGDIAKQMPVEAKKFQKIDKDWAKIMTKSVE 1534
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9905.21549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPL8_ECTSI4.820e-59100.00Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835YLK0_9STRA1.350e-5490.29Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6H5L5A5_9PHAE3.580e-52100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2D3G8_9STRA1.460e-4573.53Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S4K9T7_9STRA3.360e-4579.21Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A482S391_9ARCH3.600e-4581.19Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A024U4G7_9STRA1.730e-4479.00Uncharacterized protein n=24 Tax=Saprolegniaceae T... [more]
A0A7S3JVI8_9STRA3.200e-4476.24Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A662Y1W2_9STRA5.890e-4479.00Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A3R7BN27_9STRA1.100e-4378.00Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9905contigEcto-sp13_S_contig9905:3867..5410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score206.1
Seed ortholog evalue8e-51
Seed eggNOG ortholog2880.D7FPL8
Model size313
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005623,GO:0005929,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0034622,GO:0035082,GO:0036158,GO:0040011,GO:0042995,GO:0043226,GO:0043933,GO:0044085,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036
Exons4
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Cds size309
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464251.6051023-CDS-Ecto-sp13_S_contig9905:3866..39231681464251.6051023-CDS-Ecto-sp13_S_contig9905:3866..3923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9905 3867..3923 +
1681464251.6188903-CDS-Ecto-sp13_S_contig9905:4311..44181681464251.6188903-CDS-Ecto-sp13_S_contig9905:4311..4418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9905 4312..4418 +
1681464251.6380029-CDS-Ecto-sp13_S_contig9905:4861..49731681464251.6380029-CDS-Ecto-sp13_S_contig9905:4861..4973Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9905 4862..4973 +
1681464251.6508145-CDS-Ecto-sp13_S_contig9905:5375..54081681464251.6508145-CDS-Ecto-sp13_S_contig9905:5375..5408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9905 5376..5408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9905.21549.1prot_Ecto-sp13_S_contig9905.21549.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9905 3867..5408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9905.21549.1

>prot_Ecto-sp13_S_contig9905.21549.1 ID=prot_Ecto-sp13_S_contig9905.21549.1|Name=mRNA_Ecto-sp13_S_contig9905.21549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
GINVLKGTGTIVEELEEAQMNLQTMLSMRHVTPFREEAQNELQVLSDTSD
TLERWLKVQMMWCSLESVFTGGDIAKQMPMEAKKFAKIDKDWAKIMAKAT
ETG
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mRNA from alignment at Ecto-sp13_S_contig9905:3867..5410+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9905.21549.1 ID=mRNA_Ecto-sp13_S_contig9905.21549.1|Name=mRNA_Ecto-sp13_S_contig9905.21549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1544bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9905:3867..5410+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGATCAACGTGCTCAAGGGGACAGGCACCATCGTCGAGGAGCTGGAAGA
GGCTCAGGTTCGATTCTCCTGTTCTGGTTGCTTCACAACAACATTGGGAT
TTGGGTGCTGTTGTTCTGGTTTGGTTTTCATTGTAGGGAGGGCTGGTAGG
TTGAAGAAGAAACAGCAAGGGAACGTAGGCGAGCAGAGGCATGGATGGCT
GCAATACCAGCTGTAGCAGCAGCAGTTTCACCACCGTTAACGAGGAACAT
TTTCACTGTGATTGTCTATGTAGAAATGGAACCGTGTACTCAGAATTTCC
TCTAAGGAACGACAATGACCACCGGCGTCCGGAGGTGCCCAGTGATGTTG
TGGTGCGCAGTGATGTTGTGGTGCCCAGTGATGTTGTGGTGCCCACACGC
CCCTCGTCAACGCGTACCGAATACCCCACATTTTGGTGTACACAGATGAA
CCTCCAAACGATGCTCTCGATGAGGCACGTGACGCCCTTCCGCGAGGAGG
CCCAGAACGAGCTGCAGGTCCTCAGCGACACGTCGGATACTCTAGAGCGA
TGGTGAGTATGTAAAACCGATCCACAAACCAGCGAACAACTTGTGGTAAA
AAAGTGCGGCGACCTAGAAAGCCAAGTTGGGATGCTGATATAGGTGCTAT
TCTTGTTTTGTCTCATTTTTTTTGTAGTTGCGCGGGGCGAGCGTCAAGAA
TCTCGACGGAATCGGACACTGAAACGTTGTCGTGGAGTTCAGTACTGGAT
TTGGTGAGACCTCTTGCGCCATCAGAAGGACGTTGATTCATGAGAATTCT
CCCAACCTCGCCAAGAGCTTTGTTCGCGCGAGTAGGTCTTTTTTAAATGA
CCGCAGCGCAAAGCGAAGGTGGAGCGGGTGGCACAATCTCCAGGTTGTAC
TGTTTCTTGAATATATCTAGAGGTTTCGCGTGAAAAAAAAGGGAAGTGGA
ACCCCTGGAAACCATACCTCGTTGTTCCAACATTTGATCCATCAGGCTGA
AGGTCCAGATGATGTGGTGTTCGTTGGAGTCAGTATTCACCGGCGGCGAC
ATCGCCAAGCAGATGCCCATGGAGGCAAAGAAATTCGCCAAGATTGACAA
GGACTGGGTGAGTAAGCAACTGTTCAACGCTTTGAAGATACTTGCTCTTC
GATGAGACGTTTTCACAGGCATGGTTGCTCTGGTGGTGCTCCTTGCCATG
ACGAAAAATTGAGGCTGCCGAAGTTGTGGTCGTCGTTGCGATTGTTGTTT
CGTTCATGTGTGGCCCAGCTGAAACTGTCGTAATTTTCAACGGTAACGCG
TTGCTGGATGGTAGGTCGAGTTTTGGAGTCGCTTCATCCGAACCCTTCGA
CCTGCTCGCACAACTACCCGCTTCTTGCATGATAGTTTCTCAGGGCATAT
GTTCGATCTTTTACACCCGCAACACAGCAACATTGTGTTGGCTCATGATG
TTGTCTCCCTCCACGTGATCTTGTCCGTCGATCAAACTTCCTGGGTATGA
CGCACATAGGCAAAAATAATGGCGAAGGCAACGGAAACCGGCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9905:3867..5410+

>mRNA_Ecto-sp13_S_contig9905.21549.1 ID=mRNA_Ecto-sp13_S_contig9905.21549.1|Name=mRNA_Ecto-sp13_S_contig9905.21549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9905:3867..5410+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGATCAACGTGCTCAAGGGGACAGGCACCATCGTCGAGGAGCTGGAAGA
GGCTCAGATGAACCTCCAAACGATGCTCTCGATGAGGCACGTGACGCCCT
TCCGCGAGGAGGCCCAGAACGAGCTGCAGGTCCTCAGCGACACGTCGGAT
ACTCTAGAGCGATGGCTGAAGGTCCAGATGATGTGGTGTTCGTTGGAGTC
AGTATTCACCGGCGGCGACATCGCCAAGCAGATGCCCATGGAGGCAAAGA
AATTCGCCAAGATTGACAAGGACTGGGCAAAAATAATGGCGAAGGCAACG
GAAACCGGC
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