mRNA_Ecto-sp13_S_contig99.21541.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig99.21541.1
Unique NamemRNA_Ecto-sp13_S_contig99.21541.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig99.21541.1 vs. uniprot
Match: D7FJV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV6_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 8.600e-65
Identity = 105/136 (77.21%), Postives = 113/136 (83.09%), Query Frame = 1 
Query:    1 PDQQNCFDPADRYRVKSTSTGQQVKAHTRE*SGATFPRHHTLRDMVWGVTKARVASTRQDLSERQLPGEDRLNEDFVAQVVTPALLHAANDIAALPVNEIGTHESMVCKCTRKARAWCRLSNGGYSTTNARAYSKR 408
            P   N FD A R+RVK TSTGQQVKAHT+E SG TFPRH  LRDMV  VTKA +ASTRQDLSERQL  EDRL+EDFVAQVVT ALLH AN+IAA PVNE+G HES+VCKCTRKARA  RL NGG+STTNARAYSKR
Sbjct:    5 PQPTNRFDSAGRWRVKWTSTGQQVKAHTQEQSGTTFPRHRNLRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQVVTSALLHTANNIAAHPVNEVGKHESIVCKCTRKARACGRLCNGGFSTTNARAYSKR 140
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BLAST of mRNA_Ecto-sp13_S_contig99.21541.1 vs. uniprot
Match: A0A6H5KF40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF40_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.750e-30
Identity = 58/89 (65.17%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:  133 MVWGVTKARVASTRQDLSERQLPGEDRLNEDFVAQVVTPALLHAANDIAALPVNEIGTHESMVCKCTRKARAWCRLSNGGYSTTNARAY 399
            ++W  TKA  ASTR+ L+   L G +RL EDF+ QVVTPALLHAANDIAALPVNEIGTHE++VCK TRK+RAW +LS GG+ + +ARA+
Sbjct:   82 VMWRFTKAYQASTRKTLTLGYLLGPERLKEDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVTRKSRAWIKLSAGGFGSADARAF 170
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BLAST of mRNA_Ecto-sp13_S_contig99.21541.1 vs. uniprot
Match: A0A6H5K5R4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R4_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.120e-29
Identity = 58/89 (65.17%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:  133 MVWGVTKARVASTRQDLSERQLPGEDRLNEDFVAQVVTPALLHAANDIAALPVNEIGTHESMVCKCTRKARAWCRLSNGGYSTTNARAY 399
            ++W  TKA  ASTR+ L+   L G +RL +DF+ QVVTPALLHAANDIAALPVNEIGTHE++VCK TRK+RAW +LS GG+ + NARA+
Sbjct:  339 IMWRFTKAHQASTRKALTLGFLLGPERLKDDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVTRKSRAWIKLSAGGFGSANARAF 427
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BLAST of mRNA_Ecto-sp13_S_contig99.21541.1 vs. uniprot
Match: A0A6H5KR20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR20_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.340e-28
Identity = 57/89 (64.04%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:  133 MVWGVTKARVASTRQDLSERQLPGEDRLNEDFVAQVVTPALLHAANDIAALPVNEIGTHESMVCKCTRKARAWCRLSNGGYSTTNARAY 399
            ++W  TKA  ASTR+ L+   L G +RL EDF+ QVVTPALLHAANDIAALPVNEIGTHE++VCK  RK++AW +LS GG  + NARA+
Sbjct:  189 IMWRFTKAHQASTRKVLTLGYLLGPERLKEDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVIRKSKAWIKLSAGGIGSANARAF 277
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BLAST of mRNA_Ecto-sp13_S_contig99.21541.1 vs. uniprot
Match: D7FUZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ7_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.180e-27
Identity = 57/89 (64.04%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:  133 MVWGVTKARVASTRQDLSERQLPGEDRLNEDFVAQVVTPALLHAANDIAALPVNEIGTHESMVCKCTRKARAWCRLSNGGYSTTNARAY 399
            ++W  TKA  ASTR+ L+   L G +RL EDF+ QVVTPALL AANDIAALPVNEIGTHE++VCK TRK+RAW +LS GG+ + NA A+
Sbjct:  372 IMWRFTKAHQASTRKALTLGYLLGPERLKEDFLGQVVTPALLQAANDIAALPVNEIGTHETIVCKVTRKSRAWIKLSAGGFGSANAWAF 460
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BLAST of mRNA_Ecto-sp13_S_contig99.21541.1 vs. uniprot
Match: A0A6H5K4A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A1_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.890e-23
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:  124 LRDMVWGVTKARVASTRQDLSERQLPGEDRLNEDFVAQVVTPALLHAANDIAALPVNEIGTHESMVCKCTRKARAWCRLSNGGYSTTNARAY 399
            L  ++W  TKA + STR+DLSE QL GEDRL+EDF+AQ                    IGT ES+VCKCTRKARAW RLSNGGYS+TNA+A+
Sbjct:   39 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ--------------------IGTLESVVCKCTRKARAWGRLSNGGYSSTNAKAF 110
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BLAST of mRNA_Ecto-sp13_S_contig99.21541.1 vs. uniprot
Match: A0A6H5K1Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.670e-22
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:  124 LRDMVWGVTKARVASTRQDLSERQLPGEDRLNEDFVAQVVTPALLHAANDIAALPVNEIGTHESMVCKCTRKARAWCRLSNGGYSTTNARAY 399
            L  ++W  TKA + STR+DLSE QL GEDRL+EDF+AQ                    IGT ES+VCKCTRKARAW RLSNGGYS+TNA+A+
Sbjct:    9 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ--------------------IGTLESVVCKCTRKARAWGRLSNGGYSSTNAKAF 80
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BLAST of mRNA_Ecto-sp13_S_contig99.21541.1 vs. uniprot
Match: A0A6H5KA09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA09_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.740e-22
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:  232 AQVVTPALLHAANDIAALPVNEIGTHESMVCKCTRKARAWCRLSNGGYSTTNARAYSKR 408
            + VVTPALLHAA DIAALPV EIG+ ES+VCKCTRKARAW RLSNGGYS+TNA+A+ ++
Sbjct:  107 SSVVTPALLHAAKDIAALPVAEIGSLESVVCKCTRKARAWARLSNGGYSSTNAKAFQEK 165
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BLAST of mRNA_Ecto-sp13_S_contig99.21541.1 vs. uniprot
Match: A0A6H5KEJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ3_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.330e-21
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:  124 LRDMVWGVTKARVASTRQDLSERQLPGEDRLNEDFVAQVVTPALLHAANDIAALPVNEIGTHESMVCKCTRKARAWCRLSNGGYSTTNARAY 399
            L  ++W  TKA + STR+DLSE QL GEDRL+EDF+AQ                    IGT ES+VCKCTRKARAW RLSNGGYS+TNA+A+
Sbjct:  244 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ--------------------IGTLESVVCKCTRKARAWGRLSNGGYSSTNAKAF 315
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BLAST of mRNA_Ecto-sp13_S_contig99.21541.1 vs. uniprot
Match: A0A6H5KBL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.450e-21
Identity = 50/92 (54.35%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:  124 LRDMVWGVTKARVASTRQDLSERQLPGEDRLNEDFVAQVVTPALLHAANDIAALPVNEIGTHESMVCKCTRKARAWCRLSNGGYSTTNARAY 399
            L  ++W  TKA + STR+DLSE QL GE RL+EDF+AQ                    IG+ ES+VCKCTRKARAW RLSNGGYS+TNA+A+
Sbjct:   87 LHRVMWRYTKAHMQSTREDLSEGQLVGEARLHEDFLAQ--------------------IGSLESVVCKCTRKARAWGRLSNGGYSSTNAKAF 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig99.21541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FJV6_ECTSI8.600e-6577.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF40_9PHAE1.750e-3065.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5R4_9PHAE3.120e-2965.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR20_9PHAE1.340e-2864.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUZ7_ECTSI1.180e-2764.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4A1_9PHAE3.890e-2356.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1Q8_9PHAE1.670e-2256.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA09_9PHAE9.740e-2276.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEJ3_9PHAE1.330e-2156.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBL7_9PHAE1.450e-2154.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig99contigEcto-sp13_S_contig99:13791..16478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size408
Hectar predicted targeting categoryother localisation
Exons3
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464250.9704146-UTR-Ecto-sp13_S_contig99:13790..139181681464250.9704146-UTR-Ecto-sp13_S_contig99:13790..13918Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig99 13791..13918 +
1681464250.9816186-UTR-Ecto-sp13_S_contig99:15804..158081681464250.9816186-UTR-Ecto-sp13_S_contig99:15804..15808Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig99 15805..15808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464250.9920967-CDS-Ecto-sp13_S_contig99:15808..159131681464250.9920967-CDS-Ecto-sp13_S_contig99:15808..15913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig99 15809..15913 +
1681464251.0023816-CDS-Ecto-sp13_S_contig99:16307..164781681464251.0023816-CDS-Ecto-sp13_S_contig99:16307..16478Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig99 16308..16478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig99.21541.1prot_Ecto-sp13_S_contig99.21541.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig99 15809..16478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig99.21541.1

>prot_Ecto-sp13_S_contig99.21541.1 ID=prot_Ecto-sp13_S_contig99.21541.1|Name=mRNA_Ecto-sp13_S_contig99.21541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MVWGVTKARVASTRQDLSERQLPGEDRLNEDFVAQVVTPALLHAANDIAA
LPVNEIGTHESMVCKCTRKARAWCRLSNGGYSTTNARAYSKR
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mRNA from alignment at Ecto-sp13_S_contig99:13791..16478+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig99.21541.1 ID=mRNA_Ecto-sp13_S_contig99.21541.1|Name=mRNA_Ecto-sp13_S_contig99.21541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2688bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99:13791..16478+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGACCAGCAAAACTGCTTTGACCCAGCCGACCGCTACAGAGTAAAGTC
GACCTCAACAGGACAGCAGGTCAAGGCACACACTCGGGAGTAATCGGGCG
CAACCTTTCCTCGGCATCACACTCTCAGGTGAAGCACGCCTCGTATAGAC
ATTGACTAGAGTGCACTTACACCCGGACGCACGGAATACAGCAGCAGCCT
ACCGTAGGTTGCATACGGTATCACACTTACATTATATACCACACACCCTC
TGAATATACACACAATACCACGACGGGGTGTTTTTTTTTTAATCCCGAAG
AAAAGCGTAGTTTTTCACACGGCGAAGTAAGATACGACACCCCCAAATTT
CGACCCGCATAATATCGGCGGGGCCCCCGCTTATCACACGGTGTGAAGTC
GTGAGAATACGAGATTTCAACGCACAACCTGCTCGCACAATACGAGATTT
CAACGCACAACCTGCTCGCACAAGCCATGAAGGCCGACAATGCGAGGGGA
GTGCAGTTAGCAACCCTACTGAAAGCCCGCGGTTCACACTGCAGTGGGTA
AGACTCCATCGGCGGCTCCACGCTCCAAAGCGTCGTTTTTCAAGCCGCCG
CGGGGGACGAGGCCCCGGCTGAGACGACTCCCTTCGCAGCCGCGCATCAC
ACTGTGCGTACTATTGAGGCCCGCCCAACATATAATCTACCGGCGCTGAG
ACTCCCGCAGTACCGGCTGCGCCTGCCACTGCGGGTGCCGCTGAAACCTG
CGAAGCAGAACCTATTACTGAGAATCCCGCAGCACCCACACCCACACCCG
AAAAGGCAGCTCTCCCGCCGACCACCAACACCCTGAGCGCGGCAACTACT
GCTGAAAACCCTGTAGCAGCACCGCGCTTTTGAGAACCATCGTGCACCAA
CTAGCCCTTGTGGGCAGTCTCTTTTTTGTTGTTTCTAACTTTGGTTGATA
TGTTGCTGGCACTTGCTTGCGTCCTACATAGTTCCAGCTTGAGTGATGAA
CGCAAGTCCGCAAGTCGTTGGGTCGTCCAGATACTGTTGTGCTGTCGTTT
TGTCGCACACAACACCGGCACAACCGTTACACACGTGTTGCCCCCTATAC
AAAATTGAAAAGAAATACAGACAAAAAATCACGCCGCCGGTTTCAGCAGG
GTCAATTGTGTTTCATCCCCTCCCCAGATTGGACATGGCTGACCCCAGTT
ATTTCACCACCTCGTGCTCCTCCCACAGACCTCGGTGTGCCACCAAAGTA
CACAGGCACCTGACTCAGGTCATACCCTCCATCGGAAAGCAGTTTTCACC
CTTCGATTTTGCTTTGAACGTGACAAATGCCTTACGATCACATCTGAGTT
GAACCAGCTTTCTGCTGCTGCGCGCAACCTTTTCAGGTCGGGTGAGCCAA
CTTTCACCTAGGATTTATGAAACTCTACAGTACCCCGATTTTTTTGGCGC
GTTCCTTAGCGCAAAGCTACAGCAGTACGAAGATAAATTATAGTGTCTGC
AGGTCGCGTAAGATACCACACCCGTGGAATCTTATGCTGTACTATAGAAA
CCAAAGTCTCTGTATTTCCTTCGACGCGTTTGCGCTTTCGTACGATGTAT
CCCCTGCTGTATGTTTCTATTCAGCCTACATGTATGGCACCACGACCGTT
TTTTTTTTCCGTTATCATTGCTGTTTGTATACCATGGTCGCTGATGATCC
GGCGTTGTGATTTACACTCCTCTCATATCCGGCTACTGCTGTAGGCATAC
CTCGTCTTTACATGTAGATCAGATTTCCCCCATGGATTGTACCCGCTGTT
ACCTTGTGTAATTTCGATGGAAGAAGTAAAGTGGGTGGTGCCGCTCGCTG
GTATTGCCTGTTCGCAACTATGTGTGTTGCAACAAGAGCGGTGCGGATGA
TGAGATATCCGTGTCCTGCAGGGAGTGCAGATGTGATCTGACCCATCCAA
AGTTTCGATTGTTCTCGGTCTAGTGCGTGCCTTTTGTGTTTGCTGTTGTT
TTTTAGCGTGCTAGGGACATGGTCTGGGGAGTCACCAAGGCACGCGTTGC
GTCGACACGCCAGGACCTGTCCGAGAGGCAACTGCCGGGAGAGGATCGGC
TAAACGAGGACTTCGTGGCGCAGGTAATCATTTGTTTCCATCTGATTTGC
CCTCATCGTGTGGTGTCCCCCCGTAATGTTTTAGCTATCACACCTATGTA
CACGATCGCAGTTCAAACCCATCCCTTGTTCCTCGTCGCCACGAGACGAA
GTCGTGTATGAGCATACGTGAGGAAGTACAGAGATTCGCCCTCCTGACGT
TGTAAGAGAACACTCCGGCTCGCAGCAGGAAAACAATGAAACGAGAAGAA
TATACGCCGGAGCATGTACACAACATTTCAATTGCATGGCAGGTACAGTA
CCGGTAGGAAGCAGCAGCACGGTACACGCACTGCACCGCAACAAATGTCT
CCACATGCATACATTCATCAGCACCTTTCTTTCCCCCCCTACCTGCTGAC
GTCATGTTGTACACCAGGTCGTTACGCCCGCTCTACTGCACGCCGCGAAC
GACATCGCCGCCCTCCCGGTCAATGAGATTGGCACACACGAAAGTATGGT
GTGCAAATGCACGAGGAAGGCGAGGGCGTGGTGTAGGCTTTCCAACGGCG
GATACAGTACTACCAACGCCAGGGCATACTCCAAGAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig99:13791..16478+

>mRNA_Ecto-sp13_S_contig99.21541.1 ID=mRNA_Ecto-sp13_S_contig99.21541.1|Name=mRNA_Ecto-sp13_S_contig99.21541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99:13791..16478+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCTGGGGAGTCACCAAGGCACGCGTTGCGTCGACACGCCAGGACCT
GTCCGAGAGGCAACTGCCGGGAGAGGATCGGCTAAACGAGGACTTCGTGG
CGCAGGTCGTTACGCCCGCTCTACTGCACGCCGCGAACGACATCGCCGCC
CTCCCGGTCAATGAGATTGGCACACACGAAAGTATGGTGTGCAAATGCAC
GAGGAAGGCGAGGGCGTGGTGTAGGCTTTCCAACGGCGGATACAGTACTA
CCAACGCCAGGGCATACTCCAAGAGA
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