mRNA_Ecto-sp13_S_contig9894.21537.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9894.21537.1
Unique NamemRNA_Ecto-sp13_S_contig9894.21537.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9894.21537.1 vs. uniprot
Match: A0A6H5KMI8_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI8_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.440e-33
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:   55 SAVVTTNGVVLCPIAGRKAHKRAAPSRVCVRASFREVPTVPCNFICWSIFHQQDPRTLFQFFSYKKFSALTPLTV 279
            S V   NGVVLCPIAGRKAH++AAPSRVCVR SFREVPTVPCNFI WSIFHQQDPRTLF+ FSY+KFSALTPLTV
Sbjct:    3 SRVGPRNGVVLCPIAGRKAHRQAAPSRVCVRGSFREVPTVPCNFIGWSIFHQQDPRTLFRIFSYRKFSALTPLTV 77
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BLAST of mRNA_Ecto-sp13_S_contig9894.21537.1 vs. uniprot
Match: A0A6H5KVH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH3_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 4.410e-19
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = -1 
Query:   73 MENRPTNEIARNRRNLPKRRSDAHARGRGSLVCFAPCYGAQHNTI 207
            MENRP NEIARNRR+LPKR S AHARGRGS VCFAPCYGAQHNTI
Sbjct:    1 MENRPINEIARNRRDLPKRPSYAHARGRGSPVCFAPCYGAQHNTI 45
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9894.21537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KMI8_9PHAE1.440e-3385.33C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A6H5KVH3_9PHAE4.410e-1988.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9894contigEcto-sp13_S_contig9894:1481..1886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size407
Hectar predicted targeting categoryother localisation
Exons1
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464250.5476227-CDS-Ecto-sp13_S_contig9894:1480..18851681464250.5476227-CDS-Ecto-sp13_S_contig9894:1480..1885Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9894 1481..1885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9894.21537.1prot_Ecto-sp13_S_contig9894.21537.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9894 1481..1885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9894.21537.1

>prot_Ecto-sp13_S_contig9894.21537.1 ID=prot_Ecto-sp13_S_contig9894.21537.1|Name=mRNA_Ecto-sp13_S_contig9894.21537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
ARRQQPEQEKQAIGREKKSAVVTTNGVVLCPIAGRKAHKRAAPSRVCVRA
SFREVPTVPCNFICWSIFHQQDPRTLFQFFSYKKFSALTPLTVVPIRLLL
LSCSRSPGPRTPTLDARSRARFFGAPGGAGDAATG
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mRNA from alignment at Ecto-sp13_S_contig9894:1481..1886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9894.21537.1 ID=mRNA_Ecto-sp13_S_contig9894.21537.1|Name=mRNA_Ecto-sp13_S_contig9894.21537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=406bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9894:1481..1886+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACGGAGACAGCAGCCTGAGCAGGAGAAACAAGCCATTGGGCGAGAGAA
AAAGTCGGCCGTGGTCACGACGAATGGTGTTGTGTTGTGCCCCATAGCAG
GGCGCAAAGCACACAAGCGAGCCGCGCCCTCGCGCGTGTGCGTCAGAGCG
TCTTTTCGGGAGGTTCCGACGGTTCCGTGCAATTTCATTTGTTGGTCGAT
TTTCCATCAGCAAGATCCGAGGACACTTTTTCAATTTTTTTCCTATAAGA
AATTTTCCGCTTTGACACCCCTAACAGTAGTGCCCATAAGGCTGCTTTTG
CTTTCCTGTTCCCGTTCCCCCGGACCGCGCACCCCCACCCTGGACGCACG
GTCGCGCGCTCGTTTTTTTGGCGCTCCAGGCGGCGCTGGCGATGCTGCCA
CTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9894:1481..1886+

>mRNA_Ecto-sp13_S_contig9894.21537.1 ID=mRNA_Ecto-sp13_S_contig9894.21537.1|Name=mRNA_Ecto-sp13_S_contig9894.21537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9894:1481..1886+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACGGAGACAGCAGCCTGAGCAGGAGAAACAAGCCATTGGGCGAGAGAA
AAAGTCGGCCGTGGTCACGACGAATGGTGTTGTGTTGTGCCCCATAGCAG
GGCGCAAAGCACACAAGCGAGCCGCGCCCTCGCGCGTGTGCGTCAGAGCG
TCTTTTCGGGAGGTTCCGACGGTTCCGTGCAATTTCATTTGTTGGTCGAT
TTTCCATCAGCAAGATCCGAGGACACTTTTTCAATTTTTTTCCTATAAGA
AATTTTCCGCTTTGACACCCCTAACAGTAGTGCCCATAAGGCTGCTTTTG
CTTTCCTGTTCCCGTTCCCCCGGACCGCGCACCCCCACCCTGGACGCACG
GTCGCGCGCTCGTTTTTTTGGCGCTCCAGGCGGCGCTGGCGATGCTGCCA
CTGGA
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