mRNA_Ecto-sp13_S_contig9893.21534.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9893.21534.1
Unique NamemRNA_Ecto-sp13_S_contig9893.21534.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9893.21534.1 vs. uniprot
Match: D7FYX8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYX8_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 1.930e-55
Identity = 101/107 (94.39%), Postives = 101/107 (94.39%), Query Frame = 2 
Query:    2 LPVWMTLGNAAAASAAASWLTNPLDLAKLRLQVQRGAAATASPPPAVGATAATAPYTGMLDALRRSYRAGGLAGLFKGSGARMAFQAPSIAITMAAFEMSKEAWGSL 322
            LPVWMTLGNAAAASAAASWLTNPLDLAKLRLQVQRGAAATAS PPAV  TAATAPYTGMLDALRRSYRAGGLAGLFKGSGARMAFQAPSI ITMAAFE SKE WGSL
Sbjct:  267 LPVWMTLGNAAAASAAASWLTNPLDLAKLRLQVQRGAAATASQPPAVATTAATAPYTGMLDALRRSYRAGGLAGLFKGSGARMAFQAPSIGITMAAFEKSKEMWGSL 373
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BLAST of mRNA_Ecto-sp13_S_contig9893.21534.1 vs. uniprot
Match: D0NLH7_PHYIT (Mitochondrial Carrier (MC) Family n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NLH7_PHYIT)

HSP 1 Score: 85.1 bits (209), Expect = 1.120e-17
Identity = 54/107 (50.47%), Postives = 68/107 (63.55%), Query Frame = 2 
Query:    2 LPVWMTLGNAAAASAAASWLTNPLDLAKLRLQVQRGAAATASPPPAVGATAATAPYTGMLDALRRSYRAGGLAGLFKGSGARMAFQAPSIAITMAAFEMSKEAWGSL 322
            LP   TL +AAAA A AS+LTNPLDL KLRLQVQR  A+  +P          A Y G++D L +  R  G+  L+KG+GAR+AF APS AITM+ FE  +  + SL
Sbjct:  187 LPAQYTLASAAAAGATASFLTNPLDLIKLRLQVQRAYASQGTP----------AAYRGIIDGLTQVIRQEGVFALYKGAGARVAFHAPSTAITMSLFESCRRVFASL 283
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BLAST of mRNA_Ecto-sp13_S_contig9893.21534.1 vs. uniprot
Match: A0A7S3LE65_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LE65_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.700e-17
Identity = 52/99 (52.53%), Postives = 67/99 (67.68%), Query Frame = 2 
Query:    2 LPVWMTLGNAAAASAAASWLTNPLDLAKLRLQVQRGAAATASPPPAVGATAATAP-YTGMLDALRRSYRAGGLAGLFKGSGARMAFQAPSIAITMAAFE 295
            +P   TL  + AA AAASWLT+PLD+AKLRLQVQRG +        V  T+A  P Y GM+D L  SY+ GG+AGLF+G+GAR+   AP+  +TM A+E
Sbjct:  224 VPFHWTLFCSCAAGAAASWLTSPLDMAKLRLQVQRGRS--------VSVTSANLPAYRGMIDCLVHSYQQGGMAGLFRGAGARVLHFAPATTVTMTAYE 314
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BLAST of mRNA_Ecto-sp13_S_contig9893.21534.1 vs. uniprot
Match: A0A3M6VP50_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VP50_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.560e-17
Identity = 53/107 (49.53%), Postives = 67/107 (62.62%), Query Frame = 2 
Query:    2 LPVWMTLGNAAAASAAASWLTNPLDLAKLRLQVQRGAAATASPPPAVGATAATAPYTGMLDALRRSYRAGGLAGLFKGSGARMAFQAPSIAITMAAFEMSKEAWGSL 322
            LP   TL +AA A A AS+LTNPLDL KLRLQVQ   A  A+P          A Y G++D L +  R  G+  L+KG+GAR+AF APS AITM+ FE  ++ + SL
Sbjct:  199 LPAHYTLASAAVAGATASFLTNPLDLIKLRLQVQHAYATEANP----------AVYRGIIDGLTQLIRTEGVLALYKGAGARVAFHAPSTAITMSLFERCRQVFASL 295
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BLAST of mRNA_Ecto-sp13_S_contig9893.21534.1 vs. uniprot
Match: A0A835YZW2_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.760e-17
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 2 
Query:    2 LPVWMTLGNAAAASAAASWLTNPLDLAKLRLQVQRG----AAATASPPPAVGATAATAPYTGMLDALRRSYRAGGLAGLFKGSGARMAFQAPSIAITMAAFEMSK 304
            LP   TL  +AAA+A AS+LTNPLD+ KLRLQVQRG     AA  +P PA  +++A   + G  D L+R+Y   G  GLFKG+GAR+AF  P+ A+TM  +E  K
Sbjct:  213 LPFTATLCASAAAAAGASFLTNPLDMCKLRLQVQRGNLAACAACTAPSPASSSSSAQT-FLGFFDCLQRTYAQQGARGLFKGAGARVAFHTPAAAVTMMCYEQCK 316
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BLAST of mRNA_Ecto-sp13_S_contig9893.21534.1 vs. uniprot
Match: W2MN13_PHYPR (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=W2MN13_PHYPR)

HSP 1 Score: 83.6 bits (205), Expect = 5.450e-17
Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 2 
Query:    2 LPVWMTLGNAAAASAAASWLTNPLDLAKLRLQVQRGAAATASPPPAVGATAATAPYTGMLDALRRSYRAGGLAGLFKGSGARMAFQAPSIAITMAAFEMSKEAWGSL 322
            LP   TL +AA A A AS+LTNPLDL KLRLQVQR  A+  +P          A Y G+ D L +  R  G+  L+KG+GAR+AF APS AITM+ FE  +  + SL
Sbjct:  207 LPAQYTLASAAVAGATASFLTNPLDLIKLRLQVQRAYASEGTP----------AAYRGIADGLTQVIRTEGILALYKGAGARVAFHAPSTAITMSLFESCRRVFASL 303
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BLAST of mRNA_Ecto-sp13_S_contig9893.21534.1 vs. uniprot
Match: A0A6A3KL25_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KL25_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.640e-17
Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 2 
Query:    2 LPVWMTLGNAAAASAAASWLTNPLDLAKLRLQVQRGAAATASPPPAVGATAATAPYTGMLDALRRSYRAGGLAGLFKGSGARMAFQAPSIAITMAAFEMSKEAWGSL 322
            LP   TLG+AA A A AS+LTNPLDL KLRLQVQR  A   +P          A Y G++D L +  +  G   L+KG+GAR+AF APS AITM+ FE  +  + SL
Sbjct:  210 LPAHYTLGSAAVAGATASFLTNPLDLIKLRLQVQRAYATEVTP----------AAYRGIVDGLTQVIKTEGALALYKGAGARVAFHAPSTAITMSLFESYRRVFASL 306
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BLAST of mRNA_Ecto-sp13_S_contig9893.21534.1 vs. uniprot
Match: M4BDY7_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BDY7_HYAAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.840e-16
Identity = 51/107 (47.66%), Postives = 65/107 (60.75%), Query Frame = 2 
Query:    2 LPVWMTLGNAAAASAAASWLTNPLDLAKLRLQVQRGAAATASPPPAVGATAATAPYTGMLDALRRSYRAGGLAGLFKGSGARMAFQAPSIAITMAAFEMSKEAWGSL 322
            LP   TL +A  A A AS+LTNPLDL KLRLQVQR     A+P          A Y G++D L +  R  G+  L+KG+GAR+AF APS AITM+ FE  +  + +L
Sbjct:  137 LPAHYTLTSATLAGATASFLTNPLDLIKLRLQVQRAYTTDAAP----------AAYRGIVDGLTQVIRTEGVPALYKGAGARIAFHAPSTAITMSLFESCRRVFAAL 233
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BLAST of mRNA_Ecto-sp13_S_contig9893.21534.1 vs. uniprot
Match: A0A7S3URD5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URD5_HETAK)

HSP 1 Score: 76.6 bits (187), Expect = 8.660e-16
Identity = 49/102 (48.04%), Postives = 73/102 (71.57%), Query Frame = 2 
Query:   20 LGNAAAASAAASWLTNPLDLAKLRLQVQRGAA-ATASPPPAVGATA-ATAP-----YTGMLDALRRSYRAGGLAGLFKGSGARMAFQAPSIAITMAAFEMSK 304
            + +A  ++  ASWLTNPLDLAKLRLQVQR ++ AT +    +  +A A +P     Y+ MLD + + YRA GL GL++G+GAR+AFQAP++A+T++ F++ K
Sbjct:   16 VASATGSACLASWLTNPLDLAKLRLQVQRSSSLATKNNADGLKRSAVAHSPHHSQQYSSMLDGVAKIYRAEGLRGLYRGAGARVAFQAPNMALTVSLFDVCK 117
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BLAST of mRNA_Ecto-sp13_S_contig9893.21534.1 vs. uniprot
Match: K3X835_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X835_GLOUD)

HSP 1 Score: 79.7 bits (195), Expect = 1.500e-15
Identity = 51/107 (47.66%), Postives = 65/107 (60.75%), Query Frame = 2 
Query:    2 LPVWMTLGNAAAASAAASWLTNPLDLAKLRLQVQRGAAATASPPPAVGATAATAPYTGMLDALRRSYRAGGLAGLFKGSGARMAFQAPSIAITMAAFEMSKEAWGSL 322
            LP   TL  AA A AAAS+LTNPLDL KLRLQ+QR   A  S          T  Y+G+ + L +  R  G+  L+KG+GAR+AF APS AITM+ FE  +  + S+
Sbjct:  205 LPPLYTLAGAALAGAAASFLTNPLDLIKLRLQIQRAYVAEGS--------TGTVAYSGIFNGLSQVIRQEGVLALYKGAGARVAFHAPSTAITMSLFESCRRVFASI 303
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9893.21534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYX8_ECTSI1.930e-5594.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D0NLH7_PHYIT1.120e-1750.47Mitochondrial Carrier (MC) Family n=2 Tax=Phytopht... [more]
A0A7S3LE65_9STRA2.700e-1752.53Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A3M6VP50_9STRA3.560e-1749.53Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A835YZW2_9STRA4.760e-1750.48Mitochondrial carrier domain-containing protein n=... [more]
W2MN13_PHYPR5.450e-1749.53Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A6A3KL25_9STRA5.640e-1749.53Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
M4BDY7_HYAAE5.840e-1647.66Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7S3URD5_HETAK8.660e-1648.04Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K3X835_GLOUD1.500e-1547.66Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9893contigEcto-sp13_S_contig9893:230..953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size327
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464250.4295905-CDS-Ecto-sp13_S_contig9893:229..3261681464250.4295905-CDS-Ecto-sp13_S_contig9893:229..326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9893 230..326 +
1681464250.439967-CDS-Ecto-sp13_S_contig9893:725..9521681464250.439967-CDS-Ecto-sp13_S_contig9893:725..952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9893 726..952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9893.21534.1prot_Ecto-sp13_S_contig9893.21534.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9893 230..952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9893.21534.1

>prot_Ecto-sp13_S_contig9893.21534.1 ID=prot_Ecto-sp13_S_contig9893.21534.1|Name=mRNA_Ecto-sp13_S_contig9893.21534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
APGVDDPGQRGRGVGGGVLADEPPRLGETPTAGATRSGCNGVTAAGRRGH
GGHRAVHRHAGRPAAELPRGGAGRTFQGVRSEDGLPGPQHRHHHGRLRNV
QGSVGFPL
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mRNA from alignment at Ecto-sp13_S_contig9893:230..953+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9893.21534.1 ID=mRNA_Ecto-sp13_S_contig9893.21534.1|Name=mRNA_Ecto-sp13_S_contig9893.21534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=724bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9893:230..953+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCCCGGTGTGGATGACCCTGGGCAACGCGGCCGCGGCGTCGGCGGCGG
CGTCCTGGCTGACGAACCCCCTAGACTTGGCGAAACTCCGACTGCAGGTT
TGCGGGGGGGCGGGGGGCACGCGGGGGCAGCGTGGTGGCGGGAGGTCGTT
TTGGCTGACTTTCTTTTATGTTGCAGTGGGGAATAAAAGCGCTTGCTTCA
CGTGTGCGTGTGTTGTGTGATCCTGTGCTTGAGCAGAACGCGCCAAATGG
TTGACCGTTCAAATTGCGTCAGTACGAGAGAGATTCAATACGGTGCATGA
TACTCGGGTGCGTGGATTCCTCTCTATAGTGCAATCACCCCCTGTCTGAC
GTCAGCCATAGTTTCTGCTTCGTTCCACAAGGGATGGTGGTCCCTTCTGT
AGGCTTTGACACAAGCATCGCCATGTCATCGCCCCCGCGTGAACAACACC
GCACGGCCTGCTCTCTCTCTCTCCCCCTCCCCCTTACCCTCATCAGGTGC
AACGAGGAGCGGCTGCAACGGCGTCACCGCCGCCGGCCGTCGGGGCCACG
GCGGCCACCGCGCCGTACACCGGCATGCTGGACGCCCTGCGGCGGAGCTA
CCGCGCGGGGGGGCTGGCCGGACTTTTCAAGGGGTCAGGAGCGAGGATGG
CCTTCCAGGCCCCCAGCATCGCCATCACCATGGCCGCCTTCGAAATGTCC
AAGGAAGCGTGGGGTTCCCTCTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9893:230..953+

>mRNA_Ecto-sp13_S_contig9893.21534.1 ID=mRNA_Ecto-sp13_S_contig9893.21534.1|Name=mRNA_Ecto-sp13_S_contig9893.21534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9893:230..953+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCCCGGTGTGGATGACCCTGGGCAACGCGGCCGCGGCGTCGGCGGCGG
CGTCCTGGCTGACGAACCCCCTAGACTTGGCGAAACTCCGACTGCAGGTG
CAACGAGGAGCGGCTGCAACGGCGTCACCGCCGCCGGCCGTCGGGGCCAC
GGCGGCCACCGCGCCGTACACCGGCATGCTGGACGCCCTGCGGCGGAGCT
ACCGCGCGGGGGGGCTGGCCGGACTTTTCAAGGGGTCAGGAGCGAGGATG
GCCTTCCAGGCCCCCAGCATCGCCATCACCATGGCCGCCTTCGAAATGTC
CAAGGAAGCGTGGGGTTCCCTCTT
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