mRNA_Ecto-sp13_S_contig9892.21532.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9892.21532.1 vs. uniprot
Match: A0A6H5L2U6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U6_9PHAE) HSP 1 Score: 238 bits (606), Expect = 1.650e-75 Identity = 134/149 (89.93%), Postives = 144/149 (96.64%), Query Frame = 1 Query: 1 EELKKKEADLEAEITAEEERHSRQAAAMSAFRAAERDDTAAQFGKDHADAAVERMKHRIEKLKAIQDGLSDKIPKKQKGKKKGFMGTMVDFALGTDREGDDDNEARELDYAEQTQLIAKKAKLALVNRQIQELKRAEKTIASDFASADA 447 EELKKKEADLEAEITAEEERHSRQAAAMSAFR AERDDTAAQFGKDHADAAVERMKHRIEKLKAIQD LSDK +KQKGKKKGFMGTMV+FALGT+REGDDDNEA+ELDYAEQTQLIAKKAKLALVNRQ++ELKRA+KT++ D+ASADA Sbjct: 164 EELKKKEADLEAEITAEEERHSRQAAAMSAFRGAERDDTAAQFGKDHADAAVERMKHRIEKLKAIQDSLSDKT-EKQKGKKKGFMGTMVEFALGTEREGDDDNEAQELDYAEQTQLIAKKAKLALVNRQLEELKRAKKTVSLDYASADA 311
BLAST of mRNA_Ecto-sp13_S_contig9892.21532.1 vs. uniprot
Match: D8LL55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL55_ECTSI) HSP 1 Score: 187 bits (474), Expect = 1.260e-52 Identity = 105/128 (82.03%), Postives = 115/128 (89.84%), Query Frame = 1 Query: 82 MSAFRAAERDDTAAQFGKDHADAAVERMKHRIEKLKAIQ------DGLSDKIPKKQKGKKKGFMGTMVDFALGTDREGDDDNEARELDYAEQTQLIAKKAKLALVNRQIQELKRAEKTIASDFASADA 447 MSAFRAAERDD AAQFGKDHADAAVERMKHRIEKLK IQ DGLSDK P+KQKGKKKGFMGTMV+FALGT E DD +EA+ELDYA+QTQLIAKKAKLALVNRQI++LKRA+KTI+SD+ASADA Sbjct: 1 MSAFRAAERDDRAAQFGKDHADAAVERMKHRIEKLKEIQVLLQAKDGLSDKTPEKQKGKKKGFMGTMVEFALGTGGEDDDVSEAQELDYAKQTQLIAKKAKLALVNRQIEDLKRAKKTISSDYASADA 128 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9892.21532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9892.21532.1 >prot_Ecto-sp13_S_contig9892.21532.1 ID=prot_Ecto-sp13_S_contig9892.21532.1|Name=mRNA_Ecto-sp13_S_contig9892.21532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp EELKKKEADLEAEITAEEERHSRQAAAMSAFRAAERDDTAAQFGKDHADAback to top mRNA from alignment at Ecto-sp13_S_contig9892:2499..4508+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9892.21532.1 ID=mRNA_Ecto-sp13_S_contig9892.21532.1|Name=mRNA_Ecto-sp13_S_contig9892.21532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2010bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9892:2499..4508+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9892:2499..4508+ >mRNA_Ecto-sp13_S_contig9892.21532.1 ID=mRNA_Ecto-sp13_S_contig9892.21532.1|Name=mRNA_Ecto-sp13_S_contig9892.21532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9892:2499..4508+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |