mRNA_Ecto-sp13_S_contig989.21530.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig989.21530.1 vs. uniprot
Match: D8LMA3_ECTSI (FtsJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA3_ECTSI) HSP 1 Score: 674 bits (1739), Expect = 9.730e-241 Identity = 362/416 (87.02%), Postives = 376/416 (90.38%), Query Frame = 1 Query: 133 LCVRVQALPKA-MEMQLIDEDTTFWDDNFPNLSRERQAGAFTHVLSLVFARGAFLWGLAEAATHGRSIIDNNNEDTAVCRAYYKIKEVTSRADLSFGDDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDAAVLALPNVVHVQKPIEAAKGTLLHLLAEDVPAHERESGGGEGDERDDGGGLTHDARISGGGSSTPKESSLASRLTPGGPVASAGSAATAREPSPTGANGRPTATGKSKGAELVVSDMNAEPGVVADVLLSAMSAGLARPGALLVATFKDFCGRRKRMKDEVALAVERLKVGTAVVGGGASGFGEGDGGPAATPYGGSPPNAGTSGNDPDGGLEAGYGLSHGGAPPEARVAGVTCEKEGAGEEGWWRLEEIETMKLLAGGRAEVTIVARVAHGTGVTTAADGGR 1377 LC ++ + KA MEMQLIDE+TTFWD+NFPNLSRERQAGAFTHVLSLVFARGAFLWGLA+AATHGRSIIDNNNEDTAVCRAYYKIKEVTSRADLSFG+DWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELD+AVLALPNVVHVQK IEAAKGTLL LLAED PAHERES GGEG+ERDDGGG THD R+SGGGS TP+ SSL SRLTPGGP+ASAGSA TA E S GAN RPTA GKS+GAELVVSDMNAEP VVADVLLSAMSAGLARPGALLVATFKDFCGRRKRMKDEVALAVERL+VGT VVGGGASG GEGDGGPAA P GG PPNAGTSGND DGGLEAG GLSH G PPE RVAGV CEKEGA EGWWRLE IETMKLLAGGRAEVTIVARVAHGTGV DGGR Sbjct: 50 LCTSLEDVGKAVMEMQLIDEETTFWDENFPNLSRERQAGAFTHVLSLVFARGAFLWGLAQAATHGRSIIDNNNEDTAVCRAYYKIKEVTSRADLSFGEDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDSAVLALPNVVHVQKLIEAAKGTLLDLLAEDAPAHERESRGGEGEERDDGGGRTHDGRLSGGGSFTPEASSLGSRLTPGGPIASAGSADTAGEASSMGANDRPTAPGKSQGAELVVSDMNAEPAVVADVLLSAMSAGLARPGALLVATFKDFCGRRKRMKDEVALAVERLRVGTFVVGGGASGVGEGDGGPAAAPCGGGPPNAGTSGNDADGGLEAGNGLSHAGTPPEGRVAGVACEKEGA--EGWWRLEGIETMKLLAGGRAEVTIVARVAHGTGVANGGDGGR 463
BLAST of mRNA_Ecto-sp13_S_contig989.21530.1 vs. uniprot
Match: A0A6H5JWK0_9PHAE (FtsJ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK0_9PHAE) HSP 1 Score: 457 bits (1177), Expect = 3.160e-157 Identity = 257/315 (81.59%), Postives = 265/315 (84.13%), Query Frame = 1 Query: 430 TAIDIGAAPGGWTSFLASKCRRVLSVDPAELDAAVLALPNVVHVQKPIEAAKGTLLHLLAEDVPAHERESGGGEGDERDDGGGLTHDARISGGGSSTPKESSLASRLTPGGPVASAGSAATAREPSPTGANGRPTATGKSKGAELVVSDMNAEPGVVADVLLSAMSAGLARPGALLVATFKDFCGRRKRMKDEVALAVERLKVGTAVVGGGASGFGEGDGGPAATPYGGSPPNAGTSGNDPDGGLEAGYGLSHGGAPPEARVAGVTCEKEGAGEEGWWRLEEIETMKLLAGGRAEVTIVARVAHGTGVTTAADGG 1374 T IDIGAAPGGWTSFLASKCRRVLSVDPAELD AVLALPNVVHVQ+ IEAA+GTL LLAED P HERE G GEG+ERDDGGG THD R SGGGSSTP++SSLASRLTPGGPVASAGSA TA E S GANGRP A GK GAELVVSDMNAEP VVADVLLSAMSAGLARPGALLVATFKDFCGRRKRMKDEVA+AVERL+VGTA+V GGASG G GG PPNA TSGND D GLE G GLSH G PPE RVAGV CEKEGAGEEGWWRLEEIETMKLLAGGRAEVTIVARVAHGT V DGG Sbjct: 27 TQIDIGAAPGGWTSFLASKCRRVLSVDPAELDPAVLALPNVVHVQQLIEAAEGTLHELLAEDAPTHERECGCGEGEERDDGGGRTHDGRNSGGGSSTPEQSSLASRLTPGGPVASAGSADTADEASSMGANGRPAAPGKRGGAELVVSDMNAEPAVVADVLLSAMSAGLARPGALLVATFKDFCGRRKRMKDEVAVAVERLRVGTAIVDGGASGVGXXXXXXXXXXCGGGPPNAETSGNDADEGLEPGNGLSHAGTPPEGRVAGVACEKEGAGEEGWWRLEEIETMKLLAGGRAEVTIVARVAHGTEVANGGDGG 341
BLAST of mRNA_Ecto-sp13_S_contig989.21530.1 vs. uniprot
Match: A0A6H5JTM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM6_9PHAE) HSP 1 Score: 117 bits (292), Expect = 1.090e-26 Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 1 Query: 133 LCVRVQALPKA-MEMQLIDEDTTFWDDNFPNLSRERQAGAFTHVLSLVFARGAFLWGLAEAATHGR 327 LC ++ + KA MEMQLIDE+TTFWDDNFPNLSRERQAGAFTHVLSLVFARGAFLWGLAEAATHGR Sbjct: 132 LCASLEDVGKAVMEMQLIDEETTFWDDNFPNLSRERQAGAFTHVLSLVFARGAFLWGLAEAATHGR 197
BLAST of mRNA_Ecto-sp13_S_contig989.21530.1 vs. uniprot
Match: A0A835YXR4_9STRA (FtsJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXR4_9STRA) HSP 1 Score: 106 bits (264), Expect = 8.520e-21 Identity = 55/153 (35.95%), Postives = 92/153 (60.13%), Query Frame = 1 Query: 139 VRVQALPKAMEMQLIDEDT----TFWDDNFPNLSRERQAGA-FTHVLSLVFARGAFLWGLAEAATHGRSIIDNNNEDTAVCRAYYKIKEVTSRADLSFGDDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDAAVLALPNVVHVQKPIEAA 582 VR QA P+++E +L+++ + + + + R F V S+V+ +G F G+ A I+ + + A CRA+YK++E T RA +++ +W A+D+GA+PGGWT FL+ + RV +VDP +DA VLALPNV +++ ++AA Sbjct: 276 VRFQACPRSLEKELLNDHALAMKAIKEPKYKDFAALRLHPIDFELVASVVYTQGLFFAGVVPRAAWPGDIVAASIDAHAPCRAFYKLREATDRAGIAYQQNWNALDMGASPGGWTHFLSPRVARVFAVDPGSMDADVLALPNVTYLRAKVQAA 428
BLAST of mRNA_Ecto-sp13_S_contig989.21530.1 vs. uniprot
Match: L8GJZ6_ACACA (Ribosomal RNA large subunit methyltransferase J, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GJZ6_ACACA) HSP 1 Score: 87.0 bits (214), Expect = 7.800e-15 Identity = 53/114 (46.49%), Postives = 72/114 (63.16%), Query Frame = 1 Query: 250 FTHVLSLVFARGAFLWGLA--EAATHGRSIIDNNNEDTAVCRAYYKIKEVTSRAD-LSFGD--DWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDAAVLALPNVVHVQKPIE 576 FTHVLS+ RG + +GLA E S + + D V RAY+K+KEV +R D L D WTAID+GAAPGGWT +L+ ++V+S+DP EL + PNVVH++K +E Sbjct: 214 FTHVLSIARERGRYYYGLAPKELFWGPESGVHSVQMDK-VSRAYHKMKEVFTRIDCLRLADTAQWTAIDVGAAPGGWTQYLSPLMKQVISIDPGELR--IELPPNVVHLKKKVE 324
BLAST of mRNA_Ecto-sp13_S_contig989.21530.1 vs. uniprot
Match: A0A7S4B2L4_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2L4_CHRCT) HSP 1 Score: 81.6 bits (200), Expect = 6.900e-13 Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = 1 Query: 307 EAATHGRSIIDNNNEDTA-VCRAYYKIKEVTSRADLSFGDDWTAIDIGAAPGGWTSFLASK-CRRVLSVDPAELDAAVLALPNVVHVQKPIEAAKGTLL 597 EAA H S + +A VCRAYYK+KE+ SR ++F D AID+GA+PGGWTS+LA + C +++++DPAEL P V H+++ ++ A LL Sbjct: 345 EAAAHNDSAATRMRQTSAPVCRAYYKLKELGSRELVAFSDCSVAIDVGASPGGWTSYLAERGCSKIIAIDPAELRQTEPPPPCVEHLRQKLQDALPGLL 443
BLAST of mRNA_Ecto-sp13_S_contig989.21530.1 vs. uniprot
Match: A0A8J5XDG9_DIALT (FtsJ domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XDG9_DIALT) HSP 1 Score: 79.7 bits (195), Expect = 2.970e-12 Identity = 53/155 (34.19%), Postives = 70/155 (45.16%), Query Frame = 1 Query: 232 ERQAGAFTHVLSLVFARGAFLWGLAEAATHGRSIIDNNNEDTAVCRAYYKIKEVTSRADLSFGD--------------------------------DWTAIDIGAAPGGWTSFLASK-CRRVLSVDPAELDAAVLALPNVVHVQKPIEAAKGTLL 597 E + G THV++L +A G WG+ A +G +D+ D A RAYYK++E + FG A+D+GAAPGGWTS L V +VDPAELDA VL LP V H++ E A +L Sbjct: 274 EPKRGRHTHVVALAWANGPLAWGVEPAEAYGFKDLDSFLADAATSRAYYKLREALV---MHFGAAAXXXXXXXXXXXXXXXPAEGAGRAVAPPLLRGLRAVDVGAAPGGWTSCLIEHGAAHVTAVDPAELDAQVLVLPGVAHMRMRAEEAAAAML 425
BLAST of mRNA_Ecto-sp13_S_contig989.21530.1 vs. uniprot
Match: A0A7S4QYI9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYI9_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 4.700e-12 Identity = 57/177 (32.20%), Postives = 86/177 (48.59%), Query Frame = 1 Query: 139 VRVQALPKAMEMQLIDEDTTFWDDNFPNLSRERQAGAFTHVLSLV----FARGAFLWGLA-----EAATHGRSIIDNNNEDTAVCRAYYKIKEVTSRADLSFGDDWT---AIDIGAAPGGWTSFLAS--KCRRVLSVDPAELDAAVLALPN-----VVHVQKPIEAAKGTLLHLLAE 612 VR P ++ +LI ++ + N+P L + TH+L V R + LW + AA+ I+NNN +CRA K++E +R + + D A+D GAAPGGWT FLA +C+R+ S+DP ELD + + V H+Q +E A +L L E Sbjct: 92 VRFNTFPSSIAQELI----SYLEHNYPQLLHLLAPTSCTHILHAVKIPTTLRNSHLWCMGMDQVTTAASDSSQKIENNN---LICRAQSKLQEAYARYNYALPDATNGLIAVDCGAAPGGWTQFLAMTVQCKRIYSIDPGELDPIIFNTHHGDERVVQHLQIKVEDAMSEILQLEKE 261
BLAST of mRNA_Ecto-sp13_S_contig989.21530.1 vs. uniprot
Match: A0A7S4QYH7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYH7_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 2.260e-11 Identity = 57/177 (32.20%), Postives = 86/177 (48.59%), Query Frame = 1 Query: 139 VRVQALPKAMEMQLIDEDTTFWDDNFPNLSRERQAGAFTHVLSLV----FARGAFLWGLA-----EAATHGRSIIDNNNEDTAVCRAYYKIKEVTSRADLSFGDDWT---AIDIGAAPGGWTSFLAS--KCRRVLSVDPAELDAAVLALPN-----VVHVQKPIEAAKGTLLHLLAE 612 VR P ++ +LI ++ + N+P L + TH+L V R + LW + AA+ I+NNN +CRA K++E +R + + D A+D GAAPGGWT FLA +C+R+ S+DP ELD + + V H+Q +E A +L L E Sbjct: 302 VRFNTFPSSIAQELI----SYLEHNYPQLLHLLAPTSCTHILHAVKIPTTLRNSHLWCMGMDQVTTAASDSSQKIENNN---LICRAQSKLQEAYARYNYALPDATNGLIAVDCGAAPGGWTQFLAMTVQCKRIYSIDPGELDPIIFNTHHGDERVVQHLQIKVEDAMSEILQLEKE 471
BLAST of mRNA_Ecto-sp13_S_contig989.21530.1 vs. uniprot
Match: A0A5J4YAH7_9CHLO (Glycerophosphocholine acyltransferase 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YAH7_9CHLO) HSP 1 Score: 76.3 bits (186), Expect = 4.650e-11 Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 1 Query: 250 FTHVLSLVFARGAFLWGLAEA-ATHGRSIIDNNNEDTAVCRAYYKIKEVTSRADLSFGDDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDAAVLALPNVVHVQKPIEAAKGTLLHLL 606 F +VL++V G LW L EA T+ R+ + + V A +K++E G + AID+GAAPGGW+ +LA V++VDPA+L L+LPNV H+Q E A + LL Sbjct: 81 FQYVLNVVANEGTLLWNLHEADGTYRRTTLLTESPQKCVSSAVHKLEEALHVVGHHVGSNQRAIDLGAAPGGWSLYLAKHVAMVIAVDPADLSPQ-LSLPNVHHLQCKSEVAGDAIETLL 199 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig989.21530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig989.21530.1 >prot_Ecto-sp13_S_contig989.21530.1 ID=prot_Ecto-sp13_S_contig989.21530.1|Name=mRNA_Ecto-sp13_S_contig989.21530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=460bp VSKAVAEGKYPGGRPAPGTDDTATTPTGAVAGGATLPPPPPPPPLCVRVQback to top mRNA from alignment at Ecto-sp13_S_contig989:16957..19970- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig989.21530.1 ID=mRNA_Ecto-sp13_S_contig989.21530.1|Name=mRNA_Ecto-sp13_S_contig989.21530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3014bp|location=Sequence derived from alignment at Ecto-sp13_S_contig989:16957..19970- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig989:16957..19970- >mRNA_Ecto-sp13_S_contig989.21530.1 ID=mRNA_Ecto-sp13_S_contig989.21530.1|Name=mRNA_Ecto-sp13_S_contig989.21530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1380bp|location=Sequence derived from alignment at Ecto-sp13_S_contig989:16957..19970- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |