mRNA_Ecto-sp13_S_contig989.21528.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig989.21528.1 vs. uniprot
Match: D8LMA2_ECTSI (COX4 neighbour n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA2_ECTSI) HSP 1 Score: 362 bits (930), Expect = 2.140e-124 Identity = 187/194 (96.39%), Postives = 189/194 (97.42%), Query Frame = 1 Query: 1 MSSFNVNVEEAAYLKLMLHAAKYPWAAVNGFLLGEEGLTGQASVVAVKDAVPLFHTSTLAPLLETSAVMVDDHAARSGLCIVGFYQANQCLDDNAPGALATEVMNKIDSTHAGPSVLVVISNKRLETAGDSAVSAYGRDNNNSFRKHVEVEVAAETVKAFESALADKTEGRLVDMDEHLDDVQKDWRNPGIASA 582 MSSFNVNVEEAAYLKLMLHAAKYPWAAVNGFLLGEEGLTGQ V+VKDAVPLFHTSTLAPLLETSAVMVD HAARSGLCIVGFYQANQCLDDNAPGALATEVMNKIDSTHAGPSVLVVISNKRLETAGDSAVSAYGRD+NNSFRKHVEVEVAAE VKAFESALADKTEGRLVDMDEHLDDVQKDWRNPGIASA Sbjct: 1 MSSFNVNVEEAAYLKLMLHAAKYPWAAVNGFLLGEEGLTGQ---VSVKDAVPLFHTSTLAPLLETSAVMVDAHAARSGLCIVGFYQANQCLDDNAPGALATEVMNKIDSTHAGPSVLVVISNKRLETAGDSAVSAYGRDSNNSFRKHVEVEVAAEAVKAFESALADKTEGRLVDMDEHLDDVQKDWRNPGIASA 191
BLAST of mRNA_Ecto-sp13_S_contig989.21528.1 vs. uniprot
Match: UPI000A2A7D06 (ER membrane protein complex subunit 8 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7D06) HSP 1 Score: 120 bits (300), Expect = 2.900e-29 Identity = 75/189 (39.68%), Postives = 106/189 (56.08%), Query Frame = 1 Query: 19 NVEEAAYLKLMLHAAKYPWAAVNGFLLGEEGLTGQASVVAVKDAVPLFHTST-LAPLLETSAVMVDDHAARSGLCIVGFYQANQCLDDNAPGALATEVMNKIDSTHAGPSVLVVISNKRLETAGDS-AVSAYGRDNNN--SFRKHVEVEVAAETVKAFESALADKTEGRLVDMDEHLDDVQKDWRNPGI 573 ++ AY K++LHAAKYP AVNG LLGEE + Q S V +DA+PLFH LAP+LE + VD + SGL IVG++QAN+ +D+N+P +A ++ KI + H L++I N +L + D A+ Y +N K + V +T+ + K LVD D HLDD+ DW N I Sbjct: 4 HISAKAYTKMLLHAAKYPHKAVNGVLLGEESI--QDSEVYAQDAIPLFHQCLGLAPMLEVALNQVDSYCKASGLQIVGYFQANEHIDNNSPDGIAYKIGEKI-TDHCANGCLLMIDNTKLSVSCDDVAIKCYIVQDNKWKLIDKDLSVAGGDDTLNLTSDLIEGKAYQSLVDFDNHLDDMSLDWLNHDI 189
BLAST of mRNA_Ecto-sp13_S_contig989.21528.1 vs. uniprot
Match: A0A2T7NGX5_POMCA (MPN domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NGX5_POMCA) HSP 1 Score: 117 bits (294), Expect = 2.330e-28 Identity = 71/191 (37.17%), Postives = 104/191 (54.45%), Query Frame = 1 Query: 13 NVNVEEAAYLKLMLHAAKYPWAAVNGFLLGEEGLTGQASVVAVKDAVPLFHTST-LAPLLETSAVMVDDHAARSGLCIVGFYQANQCLDDNAPGALATEVMNKIDSTHAGPSVLVVISNKRLETAGDSAVSAYGRDNNNSFRKHVEVE--VAAETVKAFESALADKTEGRLVDMDEHLDDVQKDWRNPGIA 576 +V V AY KL+LH+AKYP AVNG LL EEG VV D +PLFH S LAP+LE + + +D + G I G+YQAN+ +DDN +A V KI + + + I N+++ S V + S+++H + + V ET++ L +L+D D HLD+V+ DWRNP ++ Sbjct: 3 DVAVGVQAYCKLLLHSAKYPHCAVNGVLLAEEGKCKDQKVVRFVDCIPLFHLSLGLAPMLEIALLQIDSYCKSKGYIIAGYYQANENIDDNQLNHVAKTVGKKIQEYFSNACIFM-IDNRQVNPDPVSEVYRIYSLKDTSWKEHDKSKRTVEEETIRTATELLKSGAHRKLLDFDNHLDNVKNDWRNPELS 192
BLAST of mRNA_Ecto-sp13_S_contig989.21528.1 vs. uniprot
Match: A0A835YUA8_9STRA (COX4 neighbour n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA8_9STRA) HSP 1 Score: 116 bits (290), Expect = 7.260e-28 Identity = 72/188 (38.30%), Postives = 106/188 (56.38%), Query Frame = 1 Query: 22 VEEAAYLKLMLHAAKYPWAAVNGFLLGEEGLTGQASVVAVKDAVPLFHTSTLAPLLETSAVMVDDHAARSGLCIVGFYQANQCLDDN-APGALATEVMNKIDSTHAGPSVLVVISNKRLETAGDSAVSAYGRDNNNSFRKHVEVEVAAETVKAFESALADKTEGRLVDMDEHLDDVQKDWRNPGIASA 582 VE AY KLMLH+A++P V G LLG + S VKDAVPLFH L P+LE ++ +VD + S L +VG Y A +D P V K+ +VL+ ++K+L+ A + A+ A+ RD+ ++R+ +E+ V + +V AF L + + DMD+HLDDV KDWRN + +A Sbjct: 6 VEPKAYCKLMLHSAQHPSCDVLGVLLGSQ----DDSRTVVKDAVPLFHLPVLTPMLEVASSLVDAYVRESDLKMVGTYYATATPEDMPGPPTHLPRVATKLCEKLGDRAVLLQQNHKKLDAAQEHALLAFERDSGGNYRRALELSVDSASVTAFNGLLLANSVPFVRDMDDHLDDVTKDWRNKTLEAA 189
BLAST of mRNA_Ecto-sp13_S_contig989.21528.1 vs. uniprot
Match: A0A5D6Y068_9STRA (MPN domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y068_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.290e-27 Identity = 84/196 (42.86%), Postives = 108/196 (55.10%), Query Frame = 1 Query: 7 SFNVNVEEAAYLKLMLHAAKYPWAAVNGFLLGEEGLTGQASVVAVKDAVPLFH-TSTLAPLLETSAVMVDDHAARSGLCIVGFYQANQCLDDNAPGA-LATEVMNKIDSTHAGPSVLVVISNKRLETAGDSAVSAYGRDNNNSF-----RKHVEVEVAAETVKAFESALADKTEGRLVDMDEHLDDVQKDWRNPGI 573 S + VE AAY+KLMLHAAK+P A G LLGEE GQ VVA DAVPLFH + LAPLLE + +VD +A +VGFY A+ D A A A +K+++ + VL+V S ++L++A S V +D + R VE A + F AL LVD DEHL+DV KDWRNP + Sbjct: 2 SDSYRVEPAAYVKLMLHAAKHPAGACCGLLLGEE--QGQGFVVA--DAVPLFHHAAPLAPLLEAACAVVDAYAQAQRQRVVGFYYASDAGDGAASLAHFAERAADKVEANCSRACVLLVDS-QQLQSAAKSGVQLLLKDVKRGWVRVDNRLRVEDSGARSAAQVFTRALEQNAFAELVDFDEHLEDVAKDWRNPHV 192
BLAST of mRNA_Ecto-sp13_S_contig989.21528.1 vs. uniprot
Match: UPI0014031EA0 (ER membrane protein complex subunit 9 n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI0014031EA0) HSP 1 Score: 114 bits (285), Expect = 6.580e-27 Identity = 72/192 (37.50%), Postives = 108/192 (56.25%), Query Frame = 1 Query: 16 VNVEEAAYLKLMLHAAKYPWAAVNGFLLGEE-GLTGQASVVAVKDAVPLFHTS-TLAPLLETSAVMVDDHAARSGLCIVGFYQANQCLDDNAPGALATEVMNKIDSTHAGPSVLVVISNKRLETA-GDSAVSAYGRDNNNSFRKHVEVEVA---AETVKAFESALADKTEGRLVDMDEHLDDVQKDWRNPGI 573 V + AY+K+ LHAAK PW AVNG LL + G + + DA+PLFHTS L P+LE + VD +A + I G+YQAN L D++P +AT++ +++ + H +VL+++ N +L G AV Y R +N K + + A T +A +A + LVD D+HLDD+++DW N I Sbjct: 4 VEISPRAYVKMQLHAAKLPWRAVNGLLLAQRVGPDPSQPCLLLTDAMPLFHTSLALTPMLEVALNQVDLWSAANNQVIAGYYQANDQLTDHSPNLVATKIGDRV-AEHMRGAVLIMLDNGKLSGEYGGPAVVVYERQDNRWTPKDKNLVMWRDWAGTRQALREMMAARAYRLLVDFDDHLDDIRRDWANGAI 194
BLAST of mRNA_Ecto-sp13_S_contig989.21528.1 vs. uniprot
Match: A0A2B4SL51_STYPI (ER membrane protein complex subunit 8 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SL51_STYPI) HSP 1 Score: 114 bits (284), Expect = 6.780e-27 Identity = 69/189 (36.51%), Postives = 105/189 (55.56%), Query Frame = 1 Query: 16 VNVEEAAYLKLMLHAAKYPWAAVNGFLLGEEGLTGQASVVAVKDAVPLFHTST-LAPLLETSAVMVDDHAARSGLCIVGFYQANQCLDDNAPGALATEVMNKIDSTHAGPSVLVVISNKRLETAGDSAVSAYGRDNNN--SFRKHVEVEVAAETVKAFESALADKTEGRLVDMDEHLDDVQKDWRNPGI 573 + V AY K++LH +KYP AVNG L+GEE L + + A+ DA+PLFH + LAP+LE + VD H +GL IVG+YQAN+ ++DN+P A+ ++ KI +L+V + K L + A Y +N K + ++ +++ + KT L+D D HLDD+ +DW N I Sbjct: 3 IQVSPRAYAKILLHTSKYPHKAVNGVLVGEENLK-EGEIYAL-DAIPLFHIALGLAPMLEVALARVDIHCKENGLQIVGYYQANEHINDNSPNAICYKIGEKICDHFNNGFMLMVDNTKLLVPCDEIACKCYVVQDNKWKQSDKDLVLDGGEDSLGLTTELIEAKTYQSLIDFDNHLDDITQDWLNKDI 189
BLAST of mRNA_Ecto-sp13_S_contig989.21528.1 vs. uniprot
Match: A0A8J5HDZ3_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HDZ3_ZINOF) HSP 1 Score: 114 bits (284), Expect = 7.910e-27 Identity = 71/196 (36.22%), Postives = 112/196 (57.14%), Query Frame = 1 Query: 22 VEEAAYLKLMLHAAKYPWAAVNGFLLGEEGLTGQASVVAVKDAVPLFHTST-LAPLLETSAVMVDDHAARSGLCIVGFYQANQCLDDNAPGALATEVMNKIDSTHAGPSVLVVISNK--RLETAG--DSAVSAYGRDNNNSFRK-------HVEVEVAAETVKAFESALADKTEGRLVDMDEHLDDVQKDWRNPGI 573 V + AY+KL+LHA K+P +AVNG LLG G + V V DAVPL H L P LE + + +++H GL +VG+Y AN+ +D G A ++ + I +VL++ +NK +L+T D AV Y RD++ S+R+ + ++ + F+ ++K + ++VD D+HLDD+ KDW NPG+ Sbjct: 9 VSQIAYVKLVLHALKHPSSAVNGLLLGRLRQDGSTATVEVADAVPLSHAQIGLLPALEIALIQIEEHFEAEGLSVVGYYHANERHNDLELGNAAKKIGDHIFRYFPRAAVLLLDNNKLQKLKTGKGRDPAVQLYTRDSSRSWRQTGSDGSNQLTLKEPTANIVLFDYISSEKWQ-QIVDFDDHLDDISKDWLNPGL 203
BLAST of mRNA_Ecto-sp13_S_contig989.21528.1 vs. uniprot
Match: A0A293N304_ORNER (MPN domain-containing protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293N304_ORNER) HSP 1 Score: 112 bits (281), Expect = 1.910e-26 Identity = 71/195 (36.41%), Postives = 105/195 (53.85%), Query Frame = 1 Query: 1 MSSFNVNVEEAAYLKLMLHAAKYPWAAVNGFLLGEEGLTGQASVVAVKDAVPLFHTST-LAPLLETSAVMVDDHAARSGLCIVGFYQANQCLDDNAPGALATEVMNKIDSTHAGPSVLVVISNKRLETAGDSA---VSAYGRDNNNSFRKHVEVEVAAETVKAFESALADKTEGRLVDMDEHLDDVQKDWRNPGI 573 M+ +V + A+ K++LH KYP AVNG LL ++ ++ + D+VPLFH L P+LE S V V+ H +GL I G+YQAN+ L DN P A + +KI + + LV++ N+RL D V YG ++N +R+ + +T+ S L K +LVD D HLDD+ +DW N I Sbjct: 1 MALGDVELGVNAFSKMLLHCLKYPHNAVNGLLLADDHRKSGDCLLRIVDSVPLFHQCLGLTPMLEVSLVQVEQHCKDNGLVIAGYYQANEHLRDNVPDITAHRIADKIADNYVD-ACLVMVDNQRLSVDCDQTEGLVMVYG-SHDNRWRERG-FRLPGKTLSVTSSLLRSKLYRKLVDFDNHLDDITRDWSNKCI 192
BLAST of mRNA_Ecto-sp13_S_contig989.21528.1 vs. uniprot
Match: UPI0009E44B74 (ER membrane protein complex subunit 8-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E44B74) HSP 1 Score: 110 bits (275), Expect = 1.400e-25 Identity = 68/183 (37.16%), Postives = 99/183 (54.10%), Query Frame = 1 Query: 34 AYLKLMLHAAKYPWAAVNGFLLGEEGLTGQASVVAVKDAVPLFHTST-LAPLLETSAVMVDDHAARSGLCIVGFYQANQCLDDNAPGALATEVMNKIDSTHAGPSVLVVISNKRLETAGDSAVSAYGRDNNN--SFRKHVEVEVAAETVKAFESALADKTEGRLVDMDEHLDDVQKDWRNPGI 573 AY K++LH +KYP AVNG LLG+E L Q + V DA+PLFH LAP+LE + VD H SGL IVG+YQAN+ ++DN+P A+ ++ KI +L+V + K + A + +N K + ++ +++ L K L+D D HLDD+ +DW N I Sbjct: 9 AYAKILLHTSKYPHKAVNGVLLGDENL--QDGEIYVLDAIPLFHICLGLAPMLEVALARVDIHCKESGLQIVGYYQANEHINDNSPNAICYKIGEKICDQFNNGFILMVDNTKLSVPCEEIACKCFVVQDNKWKPSDKDLLLDGGEDSLGLATELLEGKAYQSLIDFDNHLDDITQDWLNKDI 189 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig989.21528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig989.21528.1 >prot_Ecto-sp13_S_contig989.21528.1 ID=prot_Ecto-sp13_S_contig989.21528.1|Name=mRNA_Ecto-sp13_S_contig989.21528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp MSSFNVNVEEAAYLKLMLHAAKYPWAAVNGFLLGEEGLTGQASVVAVKDAback to top mRNA from alignment at Ecto-sp13_S_contig989:11687..15191+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig989.21528.1 ID=mRNA_Ecto-sp13_S_contig989.21528.1|Name=mRNA_Ecto-sp13_S_contig989.21528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig989:11687..15191+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig989:11687..15191+ >mRNA_Ecto-sp13_S_contig989.21528.1 ID=mRNA_Ecto-sp13_S_contig989.21528.1|Name=mRNA_Ecto-sp13_S_contig989.21528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig989:11687..15191+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |