mRNA_Ecto-sp13_S_contig9886.21526.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9886.21526.1
Unique NamemRNA_Ecto-sp13_S_contig9886.21526.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9886.21526.1 vs. uniprot
Match: D7FSU8_ECTSI (TLC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSU8_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.550e-6
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = -2 
Query:    2 QAGTMHDVGVVGFFTACNLTLTFMQW 79
            QAGT+HDVGVVGFFTACNL LTFMQW
Sbjct:  217 QAGTVHDVGVVGFFTACNLALTFMQW 242
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9886.21526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSU8_ECTSI2.550e-692.31TLC domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9886contigEcto-sp13_S_contig9886:3192..3748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size557
Hectar predicted targeting categoryother localisation
Exons1
Cds size549
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464249.6908262-UTR-Ecto-sp13_S_contig9886:3191..31991681464249.6908262-UTR-Ecto-sp13_S_contig9886:3191..3199Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9886 3192..3199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464249.7044501-CDS-Ecto-sp13_S_contig9886:3199..37481681464249.7044501-CDS-Ecto-sp13_S_contig9886:3199..3748Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9886 3200..3748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9886.21526.1prot_Ecto-sp13_S_contig9886.21526.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9886 3200..3748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9886.21526.1

>prot_Ecto-sp13_S_contig9886.21526.1 ID=prot_Ecto-sp13_S_contig9886.21526.1|Name=mRNA_Ecto-sp13_S_contig9886.21526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
MNVSVRLQAVKKPTTPTSCMVPACEKKARVSIRVGVVRASLCSPTNIQPR
VVPVETQLFGFLFRRRMYYSQQCKCWRRRGQAQQYAFQCRAVLAAWFYDL
AKTDVCSRRYAAPVCGYKRRIEQWKQRQKHLQGFGKKTQGQHVRRPCSWW
AALSSLSSVRQQQRQASKRNRQRHVGGDRSAKR
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mRNA from alignment at Ecto-sp13_S_contig9886:3192..3748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9886.21526.1 ID=mRNA_Ecto-sp13_S_contig9886.21526.1|Name=mRNA_Ecto-sp13_S_contig9886.21526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=557bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9886:3192..3748+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCACTGCATGAATGTGAGCGTGAGGTTGCAAGCCGTGAAGAAGCCGACC
ACCCCGACGTCGTGCATGGTGCCTGCCTGCGAGAAAAAGGCACGGGTTTC
CATTCGTGTGGGCGTGGTCAGGGCTTCCCTATGCTCGCCGACAAACATAC
AACCACGAGTGGTCCCAGTAGAGACACAGCTATTCGGGTTTCTTTTTCGA
AGACGCATGTATTACTCTCAACAATGCAAGTGCTGGCGGAGGAGGGGTCA
GGCACAACAGTATGCTTTTCAATGTCGTGCCGTGCTGGCAGCGTGGTTTT
ACGATCTGGCCAAAACGGACGTGTGTAGTCGAAGGTACGCGGCGCCGGTC
TGTGGATATAAGAGAAGGATCGAGCAGTGGAAACAGCGACAAAAACATCT
TCAGGGCTTTGGAAAAAAAACACAAGGACAGCACGTACGTCGGCCCTGCT
CGTGGTGGGCAGCCCTAAGCAGCTTAAGCAGCGTAAGGCAACAGCAGCGA
CAGGCTTCAAAGCGAAATAGACAACGGCATGTCGGCGGAGACCGTTCGGC
AAAGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9886:3192..3748+

>mRNA_Ecto-sp13_S_contig9886.21526.1 ID=mRNA_Ecto-sp13_S_contig9886.21526.1|Name=mRNA_Ecto-sp13_S_contig9886.21526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9886:3192..3748+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGTGAGCGTGAGGTTGCAAGCCGTGAAGAAGCCGACCACCCCGAC
GTCGTGCATGGTGCCTGCCTGCGAGAAAAAGGCACGGGTTTCCATTCGTG
TGGGCGTGGTCAGGGCTTCCCTATGCTCGCCGACAAACATACAACCACGA
GTGGTCCCAGTAGAGACACAGCTATTCGGGTTTCTTTTTCGAAGACGCAT
GTATTACTCTCAACAATGCAAGTGCTGGCGGAGGAGGGGTCAGGCACAAC
AGTATGCTTTTCAATGTCGTGCCGTGCTGGCAGCGTGGTTTTACGATCTG
GCCAAAACGGACGTGTGTAGTCGAAGGTACGCGGCGCCGGTCTGTGGATA
TAAGAGAAGGATCGAGCAGTGGAAACAGCGACAAAAACATCTTCAGGGCT
TTGGAAAAAAAACACAAGGACAGCACGTACGTCGGCCCTGCTCGTGGTGG
GCAGCCCTAAGCAGCTTAAGCAGCGTAAGGCAACAGCAGCGACAGGCTTC
AAAGCGAAATAGACAACGGCATGTCGGCGGAGACCGTTCGGCAAAGAGG
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