mRNA_Ecto-sp13_S_contig9878.21520.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9878.21520.1
Unique NamemRNA_Ecto-sp13_S_contig9878.21520.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9878.21520.1 vs. uniprot
Match: D7G8B0_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B0_ECTSI)

HSP 1 Score: 290 bits (741), Expect = 3.210e-98
Identity = 149/171 (87.13%), Postives = 153/171 (89.47%), Query Frame = 1 
Query:    1 SVNDPSACVVFPPLQIRCSAPFGKDIPCQSCRKNGLDCVFSDRQKSGPKATGAKGVPSSPGVRSVTRGRRADRTIEAPTWAATGRASTWTLLTSLYKAENARSASTLDASENLASRWITAYSTLEDLNASTFDAEQTLVAGAKANNGSPQKKLRGDMHVIGDRLTVRWVFH 513
            SVNDPSACVVFPPLQIRCSAPFGKD+PCQSCRKNGLDCVFSDRQKSGPKATGAKGVPSSP VRSVTRGRR DRTIE PT   TGRASTWTLLTSLYKAENA SASTLDASE+LASRW TAY TL D   STFDAEQT V GAKANN S QK+LR DMHVIGD+LTVRWVFH
Sbjct:    5 SVNDPSACVVFPPLQIRCSAPFGKDMPCQSCRKNGLDCVFSDRQKSGPKATGAKGVPSSPRVRSVTRGRRVDRTIEEPTRPGTGRASTWTLLTSLYKAENATSASTLDASEDLASRWTTAYWTLADHKDSTFDAEQTSVTGAKANNSSRQKELRTDMHVIGDKLTVRWVFH 175
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BLAST of mRNA_Ecto-sp13_S_contig9878.21520.1 vs. uniprot
Match: A0A6H5KYB0_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB0_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 1.660e-96
Identity = 148/167 (88.62%), Postives = 155/167 (92.81%), Query Frame = 1 
Query:    1 SVNDPSACVVFPPLQIRCSAPFGKDIPCQSCRKNGLDCVFSDRQKSGPKATGAKGVPSSPGVRSVTRGRRADRTIEAPTWAATGRASTWTLLTSLYKAENARSASTLDASENLASRWITAYSTLEDLNASTFDAEQTLVAGAKANNGSPQKKLRGDMHVIGDRLTVR 501
            SVNDPSACVVFPPLQIRCSAPFGKDIPCQSCRKNGLDCVFSDRQKSGPKATGA GVPSSPGVRSVT+GR ADRTIE PT AA+GRASTWTLLTSLY AENARSASTLDASE+LASRW TAY  L DL+ASTFDAEQT VAGA+A+NGS QK+LR DMHVIGDRLTVR
Sbjct:   26 SVNDPSACVVFPPLQIRCSAPFGKDIPCQSCRKNGLDCVFSDRQKSGPKATGATGVPSSPGVRSVTQGRGADRTIEEPTRAASGRASTWTLLTSLYTAENARSASTLDASEDLASRWTTAYWALADLDASTFDAEQTTVAGARADNGSRQKELRADMHVIGDRLTVR 192
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BLAST of mRNA_Ecto-sp13_S_contig9878.21520.1 vs. uniprot
Match: D7G8B8_ECTSI (Fungal zinc cluster transcription factor, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B8_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.700e-56
Identity = 101/153 (66.01%), Postives = 113/153 (73.86%), Query Frame = 1 
Query:   49 RCSAPFGKDIPCQSCRKNGLDCVFSDRQKSGPKATGAKGVPSSPGVRSVTRGRRADRTIEAPTWAATGRASTWTLLTSLYKAENARSASTLDASENLASRWITAYSTLE-DLNASTFDAEQTLVAGAKANNGSPQKKLRGDMHVIGDRLTVRW 504
            +CSAPFGKD PC+SCRKNG DCVFSDRQK+GPKA GAKGV SSPGV S T+G R  RT+E P  AA+GRA + T  TS ++AE   +A  LDASE LASRW TAY     D N S  DA QT VAG KANNG+ QK+LR DMH IGDRLTV W
Sbjct:   34 KCSAPFGKDSPCRSCRKNGADCVFSDRQKTGPKAKGAKGVSSSPGVSSATQGARVGRTVEEPMRAASGRARSSTTETSGHEAETTTAACALDASEGLASRWTTAYWRFAVDANNSNSDAAQTSVAGVKANNGNRQKELRADMHAIGDRLTVSW 186
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BLAST of mRNA_Ecto-sp13_S_contig9878.21520.1 vs. uniprot
Match: A0A6H5JIB6_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB6_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.900e-41
Identity = 88/168 (52.38%), Postives = 102/168 (60.71%), Query Frame = 1 
Query:    4 VNDPSACVVFPPLQIRCSAPFGKDIPCQSCRKNGLDCVFSDRQKSGPKATGAKGVPSSPGVRSVTRGRRADRTIEAPTWAATGRASTWTLLTSLYKAENARSASTLDASENLASRWITAYSTLEDLNASTFDAEQTLVAGAKANNGSPQKKLRGDMHVIGDRLTVRWV 507
            +N  SACVV  PLQ +CSAPFGKD PC+SCRKNG+DCVFSDRQ  GPKA GA GVPS PG  SVT+G  A RT++    AA+GRA   + LT        RS           +  +       D N+S  DA QT VAGA ANN   QK+LR +MH IGD L  RWV
Sbjct:   22 INGSSACVVLLPLQKKCSAPFGKDNPCRSCRKNGVDCVFSDRQNPGPKAKGATGVPSLPGEISVTQGGSAGRTVKESARAASGRARPASRLT--------RSCRXXXXXXXXXTNCLPTRRLAVDANSS--DAAQTSVAGATANNSDRQKELRVEMHAIGDSLNARWV 179
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BLAST of mRNA_Ecto-sp13_S_contig9878.21520.1 vs. uniprot
Match: A0A6H5JUP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUP2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 9.220e-16
Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:  286 YKAENARSASTLDASENLASRWITAYSTLE-DLNASTFDAEQTLVAGAKANNGSPQKKLRGDMHVIGDRLTVR 501
            ++AE   + S LDASE LASRW TAY  L  D N S  DA QT VAGA ANNG+ +K+LR DMHVIGDRLTVR
Sbjct:   32 HEAETTGAISVLDASEGLASRWTTAYWRLATDTNNS--DAAQTSVAGATANNGNREKELRADMHVIGDRLTVR 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9878.21520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8B0_ECTSI3.210e-9887.13Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5KYB0_9PHAE1.660e-9688.62Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7G8B8_ECTSI1.700e-5666.01Fungal zinc cluster transcription factor, putative... [more]
A0A6H5JIB6_9PHAE1.900e-4152.38Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JUP2_9PHAE9.220e-1664.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9878contigEcto-sp13_S_contig9878:3681..5002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size513
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-19_003800.1
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464249.179613-CDS-Ecto-sp13_S_contig9878:3680..38281681464249.179613-CDS-Ecto-sp13_S_contig9878:3680..3828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9878 3681..3828 -
1681464249.1897967-CDS-Ecto-sp13_S_contig9878:4111..41971681464249.1897967-CDS-Ecto-sp13_S_contig9878:4111..4197Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9878 4112..4197 -
1681464249.1990676-CDS-Ecto-sp13_S_contig9878:4723..50021681464249.1990676-CDS-Ecto-sp13_S_contig9878:4723..5002Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9878 4724..5002 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9878.21520.1prot_Ecto-sp13_S_contig9878.21520.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9878 3681..5002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9878.21520.1

>prot_Ecto-sp13_S_contig9878.21520.1 ID=prot_Ecto-sp13_S_contig9878.21520.1|Name=mRNA_Ecto-sp13_S_contig9878.21520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
SVNDPSACVVFPPLQIRCSAPFGKDIPCQSCRKNGLDCVFSDRQKSGPKA
TGAKGVPSSPGVRSVTRGRRADRTIEAPTWAATGRASTWTLLTSLYKAEN
ARSASTLDASENLASRWITAYSTLEDLNASTFDAEQTLVAGAKANNGSPQ
KKLRGDMHVIGDRLTVRWVFH
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mRNA from alignment at Ecto-sp13_S_contig9878:3681..5002-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9878.21520.1 ID=mRNA_Ecto-sp13_S_contig9878.21520.1|Name=mRNA_Ecto-sp13_S_contig9878.21520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1322bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9878:3681..5002- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGTCAATGACCCAAGTGCTTGCGTCGTGTTCCCGCCGCTACAGATCAG
ATGCTCTGCGCCGTTTGGCAAGGATATACCCTGCCAGTCGTGCCGAAAGA
ATGGCCTTGATTGCGTCTTCTCTGACCGGCAGAAGTCGGGGCCCAAGGCG
ACAGGGGCCAAAGGAGTGCCAAGCTCGCCGGGAGTGAGATCCGTCACGCG
GGGCAGAAGGGCGGACAGGACCATCGAAGCACCTACCTGGGCAGCGACGG
GGAGGGCATCGACCTGGACCCTTCTAACGGTACGAGATCTACACACCAGG
CGCTGCCGGGGCGGCTTGCACCCAATTGGCGAGAAACTCTTCCCATCGGT
GGTACTCAATGGACACCGAGTGTGGAAGGAATACCGTATTCTTCCCCGTA
CTCTTCCCGGCAACTTCTCACTAATTTGTCAGTCGTGAATCGTTGGCCAA
ATATTAACCACCGCTCGGGTCGGTCTCTTCGTCGTCTCTCTTTCTCCCCG
TCGTCCGCGTATCGCAACAACTAACAACTCAATACCCCACGGAACGATTC
TTCGCGTCAAATCTTGCAGCTGCGGCCGGATGAGCTCACTTTGTGTTCTG
TTTCATAATACGTATCCTTTCGGTAAGACCACTCCCTGCTTTCGTAGGCC
AGCCAACCTGAACCCGTGCACGAAAAAGACTGCACCAGAAGTTGTTCAGT
ACTCTGCTTCATGGCGCTGTGCACCTTGATCTACAGAGGACGTTGTACGT
CTGGAGAAACCCTCTTCACCCGTCCCCCTCAACCCTGCTCTTTTTTTCAA
CCCAGTCTCTATATAAAGCCGAGAACGCTAGATCAGCATCCACCCTCGAT
GCGAGCGAGAACCTCGCTTCCCGGTGGATTACGGCATACTCGTGAGTTGT
GGAGGTGGTTGTCCCCCATGGATGGCATAGACGAAAACTGATCGAGAATT
CGATGAGACTGCATTCCTCAGCGTTGCTATTCCGTGTTATTCAAGTTCGT
TTTCCCATCAATTTTCCCAAACTGGTGGAGAGTGAAGTGAGTCGAGGAAG
CTACACAGGGAGTTGGAGTTTGACGGACCACCCACACATGTATTCGTGCG
GCTGTTCGAAGATGGTTTTTCCGCACACCGTGTTACCCTTCTCTCGCGTG
GTTGATTGCTTGCATGCCTGGCAGGACACTCGAGGATCTCAATGCCAGCA
CCTTTGATGCCGAACAGACGTTGGTAGCCGGGGCCAAGGCCAACAACGGT
AGTCCCCAGAAGAAGTTGCGGGGGGACATGCACGTCATTGGTGATAGGTT
GACCGTCAGGTGGGTCTTTCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9878:3681..5002-

>mRNA_Ecto-sp13_S_contig9878.21520.1 ID=mRNA_Ecto-sp13_S_contig9878.21520.1|Name=mRNA_Ecto-sp13_S_contig9878.21520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9878:3681..5002- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGTCAATGACCCAAGTGCTTGCGTCGTGTTCCCGCCGCTACAGATCAG
ATGCTCTGCGCCGTTTGGCAAGGATATACCCTGCCAGTCGTGCCGAAAGA
ATGGCCTTGATTGCGTCTTCTCTGACCGGCAGAAGTCGGGGCCCAAGGCG
ACAGGGGCCAAAGGAGTGCCAAGCTCGCCGGGAGTGAGATCCGTCACGCG
GGGCAGAAGGGCGGACAGGACCATCGAAGCACCTACCTGGGCAGCGACGG
GGAGGGCATCGACCTGGACCCTTCTAACGTCTCTATATAAAGCCGAGAAC
GCTAGATCAGCATCCACCCTCGATGCGAGCGAGAACCTCGCTTCCCGGTG
GATTACGGCATACTCGACACTCGAGGATCTCAATGCCAGCACCTTTGATG
CCGAACAGACGTTGGTAGCCGGGGCCAAGGCCAACAACGGTAGTCCCCAG
AAGAAGTTGCGGGGGGACATGCACGTCATTGGTGATAGGTTGACCGTCAG
GTGGGTCTTTCAC
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