Homology
BLAST of mRNA_Ecto-sp13_S_contig9866.21510.1 vs. uniprot
Match:
D8LS02_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS02_ECTSI)
HSP 1 Score: 428 bits (1101), Expect = 6.060e-140
Identity = 412/497 (82.90%), Postives = 415/497 (83.50%), Query Frame = 1
Query: 1 RYLPNAKFLVHVEVDMPERLMREVLRASGWRTRFIVYEIVAKLFDAPIKPGVVPPPTGRSPAVAAAANLKLREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIDLETARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTKFLPAKNTKPSSLYYKTGTSAAGTSYYKAGATAAAHAAVXXXXXXXXXXXXXXXXXXXXXPPCAAGVKTSSIATTPASPPATPGAATAATRAPXXXXXXXXXXXXGVLGRKRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------TPTGGGALSRESFPLDAGESNAPATGXXXXXXXXXXXXXXXXXXXXNKGKFSLLAKRMPVRAKQLRVKDKAMILRHAFWKDVWPHLLKDGWKMHHVMQGDRHARYYFPTGVVRGQGNRLRIDYFDSIKH 1473
RYLPNAKFLVHVEVDMPERLMREVLRASGWRTRFIVYEIVAKLFDAP KPGVVP PTGRSPAVAAAANLKLREA XXXXXXXXXXXXXXXXXXXXXXDIDLETARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTKFLPAKNTKPSSLYYKTGTSAAG SYYKAGATAAAHAAVXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TPTGGG LSRESFPLDAGES A A G +KGKFSLLAKRMPV+AKQLRVKDKAMILRHAFWKDVWPHLLKDGWKMHHVMQGDRHARYYFPTGV+RGQGNRLRIDYFDSIKH
Sbjct: 87 RYLPNAKFLVHVEVDMPERLMREVLRASGWRTRFIVYEIVAKLFDAPTKPGVVPAPTGRSPAVAAAANLKLREAAEEKLAXXXXXXXXXXXXXXXXXXXXXXDIDLETARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTKFLPAKNTKPSSLYYKTGTSAAGASYYKAGATAAAHAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSATPTGGGTLSRESFPLDAGESYAAAAGTEVGSGASPKSDGNSSSSS-SKGKFSLLAKRMPVKAKQLRVKDKAMILRHAFWKDVWPHLLKDGWKMHHVMQGDRHARYYFPTGVIRGQGNRLRIDYFDSIKH 582
BLAST of mRNA_Ecto-sp13_S_contig9866.21510.1 vs. uniprot
Match:
A0A6H5KPQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ2_9PHAE)
HSP 1 Score: 213 bits (541), Expect = 8.630e-64
Identity = 132/145 (91.03%), Postives = 133/145 (91.72%), Query Frame = 1
Query: 46 MPERLMREVLRASGWRTRFIVYEIVAKLFDAPIKPGVVPPPTGRSPAVAAAANLKLREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIDLETARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTKFLP 480
MPERLMREV+RASGWRTRFIVYEIVAKLFDAPIKPGVVP PTGRSPAVAAAANLKLREA XXXXXXXXXXXXXXXXXXXDIDLETARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTK P
Sbjct: 1 MPERLMREVVRASGWRTRFIVYEIVAKLFDAPIKPGVVPTPTGRSPAVAAAANLKLREAAEEKLAAKRXXXXXXXXXXXXXXXXXXXDIDLETARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTKVSP 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9866.21510.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 6.06e-140 / Id = 82.90 Expect = 8.63e-64 / Id = 91.03 Sequence D8LS02_ECTSI A0A6H5KPQ2_9PHAE
Match Name E-value Identity Description
D8LS02_ECTSI 6.060e-140 82.90 Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KPQ2_9PHAE 8.630e-64 91.03 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0
Start 0
Model size 1473
Hectar predicted targeting category other localisation
Exons 5
Ec32 ortholog description hypothetical protein
Ec32 ortholog Ec-08_001560.1
Cds size 1473
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681464248.4959552-CDS-Ecto-sp13_S_contig9866:813..941 1681464248.4959552-CDS-Ecto-sp13_S_contig9866:813..941 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig9866 814..941 -
1681464248.513421-CDS-Ecto-sp13_S_contig9866:1850..2052 1681464248.513421-CDS-Ecto-sp13_S_contig9866:1850..2052 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig9866 1851..2052 -
1681464248.5236237-CDS-Ecto-sp13_S_contig9866:2496..3168 1681464248.5236237-CDS-Ecto-sp13_S_contig9866:2496..3168 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig9866 2497..3168 -
1681464248.5339892-CDS-Ecto-sp13_S_contig9866:3896..4004 1681464248.5339892-CDS-Ecto-sp13_S_contig9866:3896..4004 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig9866 3897..4004 -
1681464248.544813-CDS-Ecto-sp13_S_contig9866:4419..4782 1681464248.544813-CDS-Ecto-sp13_S_contig9866:4419..4782 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig9866 4420..4782 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9866.21510.1
>prot_Ecto-sp13_S_contig9866.21510.1 ID=prot_Ecto-sp13_S_contig9866.21510.1|Name=mRNA_Ecto-sp13_S_contig9866.21510.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=491bp
RYLPNAKFLVHVEVDMPERLMREVLRASGWRTRFIVYEIVAKLFDAPIKP GVVPPPTGRSPAVAAAANLKLREAAEEKLAAKRERREAAAAEGKGGGDEE DDDIDLETARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGM WEGTVTKFLPAKNTKPSSLYYKTGTSAAGTSYYKAGATAAAHAAVAAAAA AAAAAAAAAKPKAKAKPPCAAGVKTSSIATTPASPPATPGAATAATRAPA PAPAPAPAASAGVLGRKRLRVQVDSYSPSSPAVSPAPKAAGGRSTKGKGK GRAAAVIESRSPDERGRGKADGRGVSVKAEAGRPKKRGRPAAGGAKGGGV GFKAEAAEAESATPTGGGALSRESFPLDAGESNAPATGTDVGSGASPKSD GNGNGSSSNKGKFSLLAKRMPVRAKQLRVKDKAMILRHAFWKDVWPHLLK DGWKMHHVMQGDRHARYYFPTGVVRGQGNRLRIDYFDSIKH back to top mRNA from alignment at Ecto-sp13_S_contig9866:814..4782-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9866.21510.1 ID=mRNA_Ecto-sp13_S_contig9866.21510.1|Name=mRNA_Ecto-sp13_S_contig9866.21510.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3969bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9866:814..4782- (Ectocarpus species13 EcNAP12_S_4_19m)AGGTACCTGCCGAATGCCAAGTTCCTGGTGCACGTGGAGGTCGATATGCC
GGAGCGGCTTATGCGGGAGGTGCTCCGGGCGAGCGGGTGGCGGACTCGCT
TCATCGTGTACGAGATAGTGGCCAAGCTGTTCGACGCTCCCATCAAGCCA
GGGGTGGTGCCGCCCCCGACGGGACGCTCTCCCGCGGTTGCCGCGGCCGC
GAACCTGAAGCTTAGGGAGGCGGCGGAGGAGAAGCTTGCGGCCAAGAGGG
AGAGGAGGGAAGCGGCGGCGGCGGAGGGGAAGGGGGGCGGCGATGAGGAG
GACGACGATATCGACTTGGAGACGGCTAGGGCTCTGATCGCGGCCGAGGT
TCCGCTGATGGAG GTAGGTGGTAGGTGGCCGAGGTGCCCTTGGTCTTTTT
TTGTGGATACCAGATGACGATTCCTTCATCATTTCCGAAAGGAAAAGAAC
TATGAAGACGTTGTTAGCTGCTTTCGCCCTCACGCTCAGTTGTTGCTTGG
ATAAATGGAGCACTTGGTGCTGACTGCCCGAGCGCCTCACGCTAACACTG
GTCGTGTTCGGGTGGTAAGGTAGGTCTGCGGTCGCGATGGCTTACGGCAT
GATTTCGTGGTCACGACTATCCCCCAGGTGATCGGTCCTATGGGAAAGAA
CAATTCTCCGTCCTCTCGAGGACGCGTTGTCAATGGTCTAACAGCTGAGG
CATGCAAAGCATGAATACCCCCCCCCCTTCCCGCTTTAAGCTTGGACACA
CGCCTCCCCCTACCGCCCGATCGCACAGATGTCGCACCCGCACGTCCGGG
GCTCCGTGATCGCGGGTGAGCTGATCGGAGCCACGTTCGCCAAGAACTTC
GGGCGCGACGGCATGTGGGAAGGAACGGTGACGAAG GTGAGCACCTTGTA
GAAGAAAAGGGGCCCCAGCGTGCTGCTGAGATGTATGGGGGAGGGGGGTC
CCGCACGTGACTCCCACGACAGAGGGGGGGGGTCGAAAAGGTAGGCGAGG
CGTGAGCACGCAGAAAGCGTGGTTCTGCTGTGTGCGCGCGGCGTGTTTTC
ATCGTACTCGACGGTCGGGCTGTTGGTGTGCGTTTTAGTTTTGGGGGTTG
AACCTGGCGAACTGCTGTAGGTAGCCGGGGCCGCACGCTACCCCTCGAGT
GAAGGTCAGGGAGGGGTGTCGATTAAGCGATGTGCAACCGCGGAGCCCCC
GGTTGAGGTTGTGAGCGTTTCGCTCTCGCTCGCTCTCTCTCTCTCTCTCT
CTCTCTCTCGTTCCTACGTCAGTTTATTCCCTCTCTCGCCGTCTAGTGTA
CGAGCGCGCACACACACACACGAATTAGCCGCATGGGGGAGGAGAGAGTA
TAGCCGCACAGAGGGCATTCAGCGCTACTGTACGGGCGCGCACACACCCT
CATACACAAACTAGCCGCGTGGGGCAGGAGAGAGTGTAACCGCACGGAAG
GCATTCAGCGGCGCGCTAACACTTGGCTTGTTCCAAACCGCGCGCAGTGC
TTCCGGGCCCGGACCCAGAAAACGGTTTGGCCTTGAGCGGCTGCCGTGAT
GAACCAATCCCCTGACCGAAAGCACCCCCCTTTTACCCGATCGAACAACA
CAACAAAACATCAGTTCCTGCCTGCCAAGAACACCAAGCCGTCGTCGCTG
TACTACAAGACCGGGACCAGCGCTGCCGGCACGTCGTACTACAAGGCCGG
AGCCACCGCCGCCGCGCACGCAGCAGTCGCTGCCGCCGCCGCCGCCGCCG
CTGCCGCCGCCGCCGCCGCGAAGCCTAAGGCCAAGGCCAAGCCCCCGTGC
GCTGCCGGAGTAAAGACCAGCAGCATCGCTACTACCCCCGCCTCCCCGCC
CGCTACCCCGGGCGCCGCTACCGCTGCAACCCGGGCACCTGCCCCCGCCC
CCGCCCCCGCCCCCGCCGCTTCCGCGGGCGTTCTCGGCAGAAAGCGGCTC
AGGGTCCAGGTGGACAGCTACTCGCCGTCGTCCCCCGCTGTTTCTCCGGC
GCCTAAGGCGGCGGGCGGAAGGTCTACGAAAGGGAAGGGGAAGGGGAGGG
CAGCGGCGGTGATTGAATCACGGAGCCCCGATGAGCGAGGGAGGGGCAAG
GCCGACGGCCGTGGGGTGAGCGTCAAGGCAGAGGCCGGGCGCCCCAAGAA
GCGGGGGCGTCCTGCTGCCGGGGGGGCGAAGGGAGGGGGGGTGGGGTTCA
AGGCGGAGGCGGCGGAGGCGGAATCCGCCACCCCTACCGGCGGAGGGGCG
CTGTCGAGAGAGTCGTTCCCCCTGGATGCGGGAGAG GTAGGTGATTTCTT
CGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTGTCGTG
GTGGTGGTGATGGTGGTGGTCTATGGCTGTGGAGTGTGTCTTGTGCGAGT
AGCCTCTTTTGTCATGCTGCTCCCGGTAGGCGTCGCCACGGTGGTGCGGC
ACATTGTCGAAGCGGTTATGACTTTTTGATGACGTGGGAAGGAGAGGAGA
GTAAAGCTGGGGGGGGGGGGCGGAGGGTAGGCGCGAACCATGTATCGTCC
GCGTGCATCGCAGGGTAGGTAGGTACGTTTTTTGCCTCCGACACCGGCGT
GAAAAAGCTTTGAAGGTGTCTCCGATCGCGATTGTTTGAGCCACCTATTT
TTATTTTCCGCACGTCGCGCGATTTTTGGTTTCATGTCCTTGTTTCTTGC
CTCCGTTTCTGTGGTCACCGTCCGTAGCAGAGCAATGCCCCCGCTACCGG
CACCGACGTCGGCTCAGGTGCTTCGCCGAAAAGTGACGGCAACGGCAACG
GTAGCAGCAGCAACAAGGGGAAGTTCAGCCTGCTCGCGAAACGGATGCCT
GTTAGGGCGAAGCAGCTTAGGGTCAAGGACAAGGCCATGATCCTCAGGCA
CGCATTCTGGAAGGACGTGTGGCCCCACCTTC GTGAGTGTTGTATATATA
GGTGGTGCATGGAGATATACTAGCCCCCCAGATCCTCTGTGGTATACAGC
AGCTGCTATGGGTCGATACAGAGTATTTTTCTTTCATTTTTGGGAACGCA
ATACCTACAGTATGTTTGTTGTTTTCTTTGTTGTGTTTTTTTTTTTTCGG
TGATGGTTCTTCGTCGTGCGTTCCCGTCTTTCGTGCGAGGGCTGCGGGGA
AAGCAGCTGTTGCTGTGCGACCTCGCCTGTTTTCGCTGGTGGTGGTAGCG
GTGGTGGCGTTGATGGTGGTTGTTGTTGTGTTGTTATTGTTTGTTGTTGT
TGTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTATTGTTGTTGTTGTTG
TTGTGTTGTTGTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTATTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGCGGTACTTTGGCCGCCTGG
GTGTATGTTGCGGTGCCCTTCGTGTTGCTGCTTTCCAGCCCCTCTCTCCA
CCGCTGTTCTGGGGTCCCGCGGCCCTTTTTCACCGACTATGTTGTAGCAC
GCTCTCCCCCGTCTCTCTCTCTCATCAGCGGGCACACGATTTTTAGCGAC
ATGAGGCGGACAAAAATGTGTTCACAGTAATCTTCTTTCTATGCCGGCCT
GTTGCCCCCGGCCGTCTGTTGCGGTGAATGCACTTGGCGGAAAGATGGCA
TCATCATTCGTTCTTGTGACTAGTACGTTCCCTTCGAAGAGGCCCATCTA
CCGTTCTTGGATCGGGTATCAAAAAAACTCTCCTCATGGTGATGGGAGGT
CGCGCCGTCGTCCTGGATTTTCTCGGTCCCCTTCCGCCGCGCCCCCCCTC
TGCTGCAACCCCCCCCCCCCCCCCCCCCCGCTCCCCCGCAGTGAAGGACG
GGTGGAAGATGCACCATGTGATGCAGGGAGATCGTCACGCCCGCTACTAC
TTCCCCACCGGGGTCGTCAGGGGGCAGGGGAACCGATTGCGGATAGACTA
CTTCGACTCTATCAAGCAC back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9866:814..4782-
>mRNA_Ecto-sp13_S_contig9866.21510.1 ID=mRNA_Ecto-sp13_S_contig9866.21510.1|Name=mRNA_Ecto-sp13_S_contig9866.21510.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1473bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9866:814..4782- (Ectocarpus species13 EcNAP12_S_4_19m) AGGTACCTGCCGAATGCCAAGTTCCTGGTGCACGTGGAGGTCGATATGCC GGAGCGGCTTATGCGGGAGGTGCTCCGGGCGAGCGGGTGGCGGACTCGCT TCATCGTGTACGAGATAGTGGCCAAGCTGTTCGACGCTCCCATCAAGCCA GGGGTGGTGCCGCCCCCGACGGGACGCTCTCCCGCGGTTGCCGCGGCCGC GAACCTGAAGCTTAGGGAGGCGGCGGAGGAGAAGCTTGCGGCCAAGAGGG AGAGGAGGGAAGCGGCGGCGGCGGAGGGGAAGGGGGGCGGCGATGAGGAG GACGACGATATCGACTTGGAGACGGCTAGGGCTCTGATCGCGGCCGAGGT TCCGCTGATGGAGATGTCGCACCCGCACGTCCGGGGCTCCGTGATCGCGG GTGAGCTGATCGGAGCCACGTTCGCCAAGAACTTCGGGCGCGACGGCATG TGGGAAGGAACGGTGACGAAGTTCCTGCCTGCCAAGAACACCAAGCCGTC GTCGCTGTACTACAAGACCGGGACCAGCGCTGCCGGCACGTCGTACTACA AGGCCGGAGCCACCGCCGCCGCGCACGCAGCAGTCGCTGCCGCCGCCGCC GCCGCCGCTGCCGCCGCCGCCGCCGCGAAGCCTAAGGCCAAGGCCAAGCC CCCGTGCGCTGCCGGAGTAAAGACCAGCAGCATCGCTACTACCCCCGCCT CCCCGCCCGCTACCCCGGGCGCCGCTACCGCTGCAACCCGGGCACCTGCC CCCGCCCCCGCCCCCGCCCCCGCCGCTTCCGCGGGCGTTCTCGGCAGAAA GCGGCTCAGGGTCCAGGTGGACAGCTACTCGCCGTCGTCCCCCGCTGTTT CTCCGGCGCCTAAGGCGGCGGGCGGAAGGTCTACGAAAGGGAAGGGGAAG GGGAGGGCAGCGGCGGTGATTGAATCACGGAGCCCCGATGAGCGAGGGAG GGGCAAGGCCGACGGCCGTGGGGTGAGCGTCAAGGCAGAGGCCGGGCGCC CCAAGAAGCGGGGGCGTCCTGCTGCCGGGGGGGCGAAGGGAGGGGGGGTG GGGTTCAAGGCGGAGGCGGCGGAGGCGGAATCCGCCACCCCTACCGGCGG AGGGGCGCTGTCGAGAGAGTCGTTCCCCCTGGATGCGGGAGAGAGCAATG CCCCCGCTACCGGCACCGACGTCGGCTCAGGTGCTTCGCCGAAAAGTGAC GGCAACGGCAACGGTAGCAGCAGCAACAAGGGGAAGTTCAGCCTGCTCGC GAAACGGATGCCTGTTAGGGCGAAGCAGCTTAGGGTCAAGGACAAGGCCA TGATCCTCAGGCACGCATTCTGGAAGGACGTGTGGCCCCACCTTCTGAAG GACGGGTGGAAGATGCACCATGTGATGCAGGGAGATCGTCACGCCCGCTA CTACTTCCCCACCGGGGTCGTCAGGGGGCAGGGGAACCGATTGCGGATAG ACTACTTCGACTCTATCAAGCAC back to top