mRNA_Ecto-sp13_S_contig9863.21506.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE) HSP 1 Score: 115 bits (288), Expect = 2.390e-28 Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 Query: 19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTAC 192 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTAC Sbjct: 365 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTAC 422
BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: D8LEJ0_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ0_ECTSI) HSP 1 Score: 115 bits (287), Expect = 3.240e-28 Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1 Query: 19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTAC 192 DPS+RSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTAC Sbjct: 19 DPSVRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTAC 76
BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A835GKE5_SPOEX (DNA helicase n=1 Tax=Spodoptera exigua TaxID=7107 RepID=A0A835GKE5_SPOEX) HSP 1 Score: 64.7 bits (156), Expect = 1.710e-10 Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 1 Query: 19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTACRCDIFFF 213 DPSIRS++S+ L+GAVVI+DEAHN+EG+CRD S++++ L + +L SQ DI F+ Sbjct: 244 DPSIRSSLSIDLKGAVVIIDEAHNIEGICRDVASVDITQLQIQNAIVELEKVSQYRVANQDIEFY 308
BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A2H1VWR6_SPOFR (DNA helicase n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VWR6_SPOFR) HSP 1 Score: 62.4 bits (150), Expect = 1.110e-9 Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 1 Query: 19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTACRCDIFFF 213 DPSIRS++S+ L GAVVI+DEAHN+EG+CRD S++++ L + +L SQ D+ ++ Sbjct: 158 DPSIRSSLSIDLTGAVVIIDEAHNIEGICRDVASVDITQLQIQNAIKELETVSQYRFANQDVEYY 222
BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A2H1VVE1_SPOFR (DNA helicase (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VVE1_SPOFR) HSP 1 Score: 62.4 bits (150), Expect = 1.120e-9 Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 1 Query: 19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTACRCDIFFF 213 DPSIRS++S+ L GAVVI+DEAHN+EG+CRD S++++ L + +L SQ D+ ++ Sbjct: 230 DPSIRSSLSIDLTGAVVIIDEAHNIEGICRDVASVDITQLQIQNAIKELETVSQYRFANQDVEYY 294
BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A8N7W4Z7_SPOFR (Fanconi anemia group J protein homolog isoform X1 n=6 Tax=Spodoptera TaxID=7106 RepID=A0A8N7W4Z7_SPOFR) HSP 1 Score: 62.4 bits (150), Expect = 1.130e-9 Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 1 Query: 19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTACRCDIFFF 213 DPSIRS++S+ L GAVVI+DEAHN+EG+CRD S++++ L + +L SQ D+ ++ Sbjct: 471 DPSIRSSLSIDLTGAVVIIDEAHNIEGICRDVASVDITQLQIQNAIKELETVSQYRFANQDVEYY 535
BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A7S0B927_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0B927_9DINO) HSP 1 Score: 59.3 bits (142), Expect = 1.280e-8 Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 Query: 19 DPSIR-SAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDL 165 DPS+R +A +L L+G VVILDEAHNVEGVCR+AGS E SL M A+ + L Sbjct: 95 DPSVRRTAGALDLQGCVVILDEAHNVEGVCREAGSAEFSLDQMRAVIAGL 144
BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A2W1BYG9_HELAM (DNA helicase n=7 Tax=Helicoverpa TaxID=7112 RepID=A0A2W1BYG9_HELAM) HSP 1 Score: 58.9 bits (141), Expect = 1.880e-8 Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 1 Query: 19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVS 132 DPSIR++MS+ L GAVVI+DEAHN+EG+CRD S+ ++ Sbjct: 467 DPSIRNSMSIELTGAVVIIDEAHNIEGICRDVASVNIT 504
BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A812QM34_SYMPI (Rtel1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812QM34_SYMPI) HSP 1 Score: 58.5 bits (140), Expect = 2.570e-8 Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 Query: 19 DPSIRSAMSLA---LEGAVVILDEAHNVEGVCRDAGSLEVSL 135 DPS+R A L+ L G +V+LDEAHNVEGVCRDAGS E+SL Sbjct: 441 DPSVRQAAGLSCADLSGRIVVLDEAHNVEGVCRDAGSAEISL 482
BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A7S0D6L2_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D6L2_MICPS) HSP 1 Score: 58.2 bits (139), Expect = 3.470e-8 Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 1 Query: 19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASD 162 DPS+R+AM + + GA+VILDEAHNVE CR+A S +V L D+ A A + Sbjct: 281 DPSVRAAMDVDIAGALVILDEAHNVEDTCREAASCDVHLHDLRAAAEE 328 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9863.21506.1 >prot_Ecto-sp13_S_contig9863.21506.1 ID=prot_Ecto-sp13_S_contig9863.21506.1|Name=mRNA_Ecto-sp13_S_contig9863.21506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp PPSKSQDPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAback to top mRNA from alignment at Ecto-sp13_S_contig9863:5273..5485- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9863.21506.1 ID=mRNA_Ecto-sp13_S_contig9863.21506.1|Name=mRNA_Ecto-sp13_S_contig9863.21506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9863:5273..5485- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9863:5273..5485- >mRNA_Ecto-sp13_S_contig9863.21506.1 ID=mRNA_Ecto-sp13_S_contig9863.21506.1|Name=mRNA_Ecto-sp13_S_contig9863.21506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9863:5273..5485- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |