mRNA_Ecto-sp13_S_contig9862.21504.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A7S1U3I3_9STRA (Tubulin beta chain (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3I3_9STRA) HSP 1 Score: 286 bits (733), Expect = 6.760e-96 Identity = 134/142 (94.37%), Postives = 139/142 (97.89%), Query Frame = 1 Query: 1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426 QIG+KFWEVISDEHG+DPTG YHGDSDLQLERIN Y+NEATGGRYVPRAILMDLEPGTMDSVR+GPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCD LQGFQLTHSMGGGTGAGMGTLLISK+R Sbjct: 30 QIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSMGGGTGAGMGTLLISKIR 171
BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: TBB5_ECTVR (Tubulin beta-5 chain n=44 Tax=Eukaryota TaxID=2759 RepID=TBB5_ECTVR) HSP 1 Score: 294 bits (753), Expect = 8.980e-96 Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1 Query: 1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426 QIGSKFWEVISDEHGIDPTG YHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVR+GPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR Sbjct: 15 QIGSKFWEVISDEHGIDPTGSYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 156
BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A6A0AGU3_HAELA (Tubulin beta chain (Fragment) n=3 Tax=Eukaryota TaxID=2759 RepID=A0A6A0AGU3_HAELA) HSP 1 Score: 285 bits (728), Expect = 1.840e-95 Identity = 132/142 (92.96%), Postives = 139/142 (97.89%), Query Frame = 1 Query: 1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426 QIG+KFWEV+SDEHGIDPTG YHGDSDLQLERIN YFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQ+FRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCD LQGFQ+THS+GGGTG+GMGTLLISK+R Sbjct: 15 QIGAKFWEVVSDEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVTHSLGGGTGSGMGTLLISKIR 156
BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A7R9UP53_DIALT (Tubulin beta chain (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UP53_DIALT) HSP 1 Score: 283 bits (725), Expect = 3.250e-95 Identity = 131/142 (92.25%), Postives = 139/142 (97.89%), Query Frame = 1 Query: 1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426 QIG+KFWEVISDEHG+DPTG YHGDSDLQLERIN YFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAESCD LQGFQ+THSMGGGTG+GMGTLLISK+R Sbjct: 29 QIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAESCDCLQGFQITHSMGGGTGSGMGTLLISKIR 170
BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A816GJ29_ADIRI (Tubulin beta chain n=2 Tax=Opisthokonta TaxID=33154 RepID=A0A816GJ29_ADIRI) HSP 1 Score: 281 bits (719), Expect = 1.210e-94 Identity = 130/142 (91.55%), Postives = 138/142 (97.18%), Query Frame = 1 Query: 1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426 QIGSKFWEVISDEHGIDPTG YHGDSDLQLERIN YFNEA GG+YVPRA+L+DLEPGTMDSVRSGPFGQLFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVVRKEAESCD LQGFQLTHS+GGGTG+GMGTLLISK+R Sbjct: 15 QIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYFNEAAGGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIR 156
BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A7S1NSD1_9EUGL (Tubulin beta chain (Fragment) n=2 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NSD1_9EUGL) HSP 1 Score: 282 bits (721), Expect = 1.280e-94 Identity = 130/142 (91.55%), Postives = 139/142 (97.89%), Query Frame = 1 Query: 1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426 QIGSKFWEV+SDEHG+DPTG Y+GDSDLQLERIN Y+NEATGGRYVPRAILMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCD LQGFQ+THSMGGGTG+GMGTLLISK+R Sbjct: 21 QIGSKFWEVVSDEHGVDPTGTYNGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQMTHSMGGGTGSGMGTLLISKIR 162
BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A813CFH2_9DINO (Tubulin beta chain (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CFH2_9DINO) HSP 1 Score: 281 bits (720), Expect = 2.160e-94 Identity = 131/142 (92.25%), Postives = 137/142 (96.48%), Query Frame = 1 Query: 1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426 QIG+KFWEVI+DEHGIDPTG YHGDSDLQLERIN YFNEATGGRYVPRA+LMDLEPGTMDSVR+GPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CD LQGFQL HS+GGGTGAGMGTLL+SKVR Sbjct: 46 QIGAKFWEVIADEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQLCHSLGGGTGAGMGTLLVSKVR 187
BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A078B8F6_STYLE (Tubulin beta chain n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B8F6_STYLE) HSP 1 Score: 281 bits (718), Expect = 2.270e-94 Identity = 130/142 (91.55%), Postives = 138/142 (97.18%), Query Frame = 1 Query: 1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426 QIG+KFWEVISDEHGIDPTG YHGDSDLQLERIN Y+NEATGGRYVPRA+LMDLEPGTMDSVR+GPFGQLFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CD LQGFQ+THS+GGGTG+GMGTLLISKVR Sbjct: 15 QIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVR 156
BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0C5P2_PARTE (Tubulin beta chain n=2 Tax=Alveolata TaxID=33630 RepID=A0C5P2_PARTE) HSP 1 Score: 283 bits (723), Expect = 2.660e-94 Identity = 132/142 (92.96%), Postives = 138/142 (97.18%), Query Frame = 1 Query: 1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426 QIG+KFWEVISDEHGIDPTG YHGDSDLQLERIN Y+NEATGGRYVPRAILMDLEPGTMDSVR+GPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CD LQGFQ+THS+GGGTG+GMGTLLISKVR Sbjct: 15 QIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVR 156
BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A813BU98_9DINO (Tubulin beta chain n=5 Tax=Dinophyceae TaxID=2864 RepID=A0A813BU98_9DINO) HSP 1 Score: 280 bits (717), Expect = 2.800e-94 Identity = 133/149 (89.26%), Postives = 138/149 (92.62%), Query Frame = 1 Query: 1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVRRRGYRLG 447 QIG+KFWEVI+DEHGIDPTG YHGDSDLQLERIN YFNEATGGRYVPRA+LMDLEPGTMDSVR+GPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CD LQGFQL HS+GGGTGAGMGTLLISKV R G Sbjct: 15 QIGAKFWEVIADEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQLCHSLGGGTGAGMGTLLISKVGAMQERAG 163 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9862.21504.1 >prot_Ecto-sp13_S_contig9862.21504.1 ID=prot_Ecto-sp13_S_contig9862.21504.1|Name=mRNA_Ecto-sp13_S_contig9862.21504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp MDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSback to top mRNA from alignment at Ecto-sp13_S_contig9862:4593..5184+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9862.21504.1 ID=mRNA_Ecto-sp13_S_contig9862.21504.1|Name=mRNA_Ecto-sp13_S_contig9862.21504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=592bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9862:4593..5184+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9862:4593..5184+ >mRNA_Ecto-sp13_S_contig9862.21504.1 ID=mRNA_Ecto-sp13_S_contig9862.21504.1|Name=mRNA_Ecto-sp13_S_contig9862.21504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9862:4593..5184+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |