mRNA_Ecto-sp13_S_contig9856.21499.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9856.21499.1 vs. uniprot
Match: A0A6H5KTR2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTR2_9PHAE) HSP 1 Score: 783 bits (2023), Expect = 1.690e-275 Identity = 433/480 (90.21%), Postives = 437/480 (91.04%), Query Frame = 1 Query: 19 LDAMRVESVVRGYAANAAEILPLQRPARTLLPPLLFCMACELLHVRLLAPEVREVCRQIVTDYEARAKLWMSPAQNAERFLQPLVMEFASWLRANRDILYQGSATEGLLRSIDEGLRSSLKNQVYRSAEHFLEVLKSLSSSLTDMPLPSYDPSGGDDHPFDVSQTLKDVSRERFDVNKVPTDPSQCWSQIQTLLLQAAVQDQKXXXXXXXXXXXXXXXVKPDRVARPPDAAAVQPDTGGARIATDTAAASATSTGAAAESVKPWGVKDEEDVRPSRSVPADQEVDHTPSGPDGTHCCDASPSGVRVPGEGVCSAGPVQGGVGGAAKVGDGAVAGKSALETYVDQCAWRVLHAASRTASGGDSFFVVQDLFGGEGVLVKMATAPTEPIRIRTKGLAVRVTTVDKHDIYHISDVDMTTCEASPRPLMTITTTMKEIIQFAPFVEQLALVRRKSGLIAEGNGADIPAEPSNRQQQPSHARSGR 1458 LDAMRVESVVRGYAANAAEILPLQRPARTLLPPLLFCMACELLHVRLLAPEVREVCRQIVTDYEARAKLWMSPAQNAERFLQPLVMEFASWLRANRDILYQGSATEGLLRSIDEGLRSSLKNQVYRSAEHFLEVLKSLSSSLTDMPLPSYDPSGGDDHPFDVSQTLKDVSRERFDVNKVPTDPS+CWSQIQTLLLQAAVQDQ XXXXXXXXXXXX P RVARPPDAAAVQPDTGGARI DTAAASAT +VKP GVKDE DVRP RSVPADQEVDHT GP GTHCCDASPSGVRVPGEG GPV GDGAVA KSALETYVDQCAWRVLHAASRTASGGDSFFVVQDLFGGEGVLVKMATAPTEPIRIRTKGLAVRVTTVDKHDIYHISDVDMTTCEASPRPLMTITTTMKEIIQFAPFVE LVRRKSGLIA+GNG+ IPAEPS RQQQPS ARSGR Sbjct: 357 LDAMRVESVVRGYAANAAEILPLQRPARTLLPPLLFCMACELLHVRLLAPEVREVCRQIVTDYEARAKLWMSPAQNAERFLQPLVMEFASWLRANRDILYQGSATEGLLRSIDEGLRSSLKNQVYRSAEHFLEVLKSLSSSLTDMPLPSYDPSGGDDHPFDVSQTLKDVSRERFDVNKVPTDPSRCWSQIQTLLLQAAVQDQXXXXXXXXXXXXX---ATPGRVARPPDAAAVQPDTGGARIVIDTAAASATGXXXXXXTVKPKGVKDEVDVRPPRSVPADQEVDHTSRGPGGTHCCDASPSGVRVPGEGGFGGGPVXXXXXXXXXDGDGAVAAKSALETYVDQCAWRVLHAASRTASGGDSFFVVQDLFGGEGVLVKMATAPTEPIRIRTKGLAVRVTTVDKHDIYHISDVDMTTCEASPRPLMTITTTMKEIIQFAPFVEHPVLVRRKSGLIAQGNGSVIPAEPSKRQQQPSQARSGR 833
BLAST of mRNA_Ecto-sp13_S_contig9856.21499.1 vs. uniprot
Match: D7FY37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY37_ECTSI) HSP 1 Score: 545 bits (1403), Expect = 9.460e-186 Identity = 309/430 (71.86%), Postives = 313/430 (72.79%), Query Frame = 1 Query: 172 VREVCRQIVTDYEARAKLWMSPAQNAERFLQPLVMEFASWLRANRDILYQGSATEGLLRSIDEGLRSSLKNQVYRSAEHFLEVLKSLSSSLTDMPLPSYDPSGGDDHPFDVSQTLKDVSRERFDVNKVPTDPSQCWSQIQTLLLQAAVQDQKXXXXXXXXXXXXXXXVKPDRVARPPDAAAVQPDTGGARIATDTAAASATSTGAAAESVKPWGVKDEEDVRPSRSVPADQEVDHTPSGPDG-THCCDASPSGVRVPGEGVCSAGPVQGGVGGAAKVGDGAVAGKSALETYVDQCAWRVLHAASRTASGGDSFFVVQDLFGGEGVLVKMATAPTEPIRIRTKGLAVRVTTVDKHDIYHISDVDMTTCEASPRPLMTITTTMKEIIQFAPFVEQLALVRRKSGLIAEGNGADIPAEPSNRQQQPSHARSGR 1458 VREVCRQIVTDYEARAKLWMSPAQNAERFLQPLVMEFASWLRANRDILYQGSATEGLLRSIDEGLRSSLKNQVYRSAEHFLEVLKSLSSSLTDMPLPSYDPSGGDDHPFDVSQ SV+P VKD+EDVR SRSVP DQ VDHT GPDG T C ASPSGVRVPGEG GPVQGGVGG AK GDGAVA KSALETYVDQCAWRVLHAASRTASGGDSFFVVQDLFGGEGVLVKMATAPTEPIRIRTKGLAVRVTTVDKHDIYHISDVDMTT EASPRPLMTIT+TMKEIIQFAPFVE LVRRKSGLIAEGNG+DIPAEPSNRQQQPSHARSGR Sbjct: 316 VREVCRQIVTDYEARAKLWMSPAQNAERFLQPLVMEFASWLRANRDILYQGSATEGLLRSIDEGLRSSLKNQVYRSAEHFLEVLKSLSSSLTDMPLPSYDPSGGDDHPFDVSQ-----------------------------------------------------------------------------------------------SVRPKRVKDKEDVRASRSVPVDQAVDHTSRGPDGCTRCPAASPSGVRVPGEGGRGGGPVQGGVGGTAKDGDGAVAAKSALETYVDQCAWRVLHAASRTASGGDSFFVVQDLFGGEGVLVKMATAPTEPIRIRTKGLAVRVTTVDKHDIYHISDVDMTTSEASPRPLMTITSTMKEIIQFAPFVEHPVLVRRKSGLIAEGNGSDIPAEPSNRQQQPSHARSGR 650
BLAST of mRNA_Ecto-sp13_S_contig9856.21499.1 vs. uniprot
Match: A0A835YH88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH88_9STRA) HSP 1 Score: 292 bits (748), Expect = 4.260e-85 Identity = 204/473 (43.13%), Postives = 258/473 (54.55%), Query Frame = 1 Query: 19 LDAMRVESVVRGYAANAAEILPLQRPARTLLPPLLFCMACELLHVRLLAPEVREVCRQIVTDYEARAKLWMSPAQNAERFLQPLVMEFASWLRANRDILYQGSATEGLLRSIDEGLRSSLKNQV--------------------------YRSAEHFLEVLKSLSSSLTDMPLP--SYDPSGGDDHPFDVSQTLKDVSRERFDVNKVPTDPSQCWSQIQTLLLQAAVQDQKXXXXXXXXXXXXXXXVKPDRVARPPDAAAVQPDTGGARIATDTAAASATSTGAAAESVKPWGVKDEED----VRPSRSVPADQEVDHTP-SGPDGTHCCDASPSGVRVPGEGVCSAGPVQGGVGGAAKVGDGAVAGKSALETYVDQCAWRVLHAASRTASGGDSFFVVQDLFGGEGVLVKMATAPTEPIRIRTKGLAVRVTTVDKHDIYHISDVDMTTCEASPRPLMTITTTMKEIIQFAPF 1338 +D +R E ++R + A A E LPLQRPAR LLPPLLFCMAC++L VRLL PEVR V +IV DYEARA++WM+PAQNA FL+PLV+EFASWLR N +ILY SATE LLR +D LR LKNQ Y+SAEHFL V +SL LTD+ LP + D DD FDV QT+KD++RERF VN P+QC +++++ AA+ D ++R P + P+ G + S A+ P G + D V + +D E D + S P+ TH A+ VPG + A+ G V G A YV +C WR LHAASRTASGGDSFF+VQDLFGGEGVL+K PIR+ GL + VTT + +DIYH SDV + P PLMT+ TT+KE+I F PF Sbjct: 336 VDPLRCEGLLRAWTACAGEYLPLQRPARALLPPLLFCMACDILGVRLLGPEVRTVVDKIVADYEARARVWMAPAQNAATFLRPLVLEFASWLRQNAEILYHASATEALLRCVDRDLRFRLKNQXXXXXXXXXXXXXXXXXXXXXXXXXXXYQSAEHFLLVFQSLRPLLTDIELPVNALDDEE-DDSEFDVGQTMKDINRERFVVNGDDMSPAQCVEALRSIVT-AALTDAAGGPAAPRNPPSLAVTTP---LSRAPPGMSTVPEGGDGSMHVPAELDSPRRRPAS-----PRGPRRPSDRGMHVVQLCQIASDSECDSSSESEPESTHRARAT----SVPGSPLIGTNAANSSSISTAQTGGFNVEGL-AERAYVGRCVWRALHAASRTASGGDSFFIVQDLFGGEGVLIKATRIAPPPIRLAASGLTLTVTTTNAYDIYHFSDVAEGD-DGPPCPLMTVCTTLKEVIAFLPF 792
BLAST of mRNA_Ecto-sp13_S_contig9856.21499.1 vs. uniprot
Match: A0A1Z5JA10_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JA10_FISSO) HSP 1 Score: 60.8 bits (146), Expect = 3.890e-6 Identity = 44/144 (30.56%), Postives = 70/144 (48.61%), Query Frame = 1 Query: 31 RVESVVRGYAANAAEILPLQRPARTLLPPLLFCMACELLHVRLLAPEVREVCRQIVTDYE-----ARAKLWMSPAQNAERFLQPLVMEFASWLRANRDILYQGSATEGLLRS-IDEGLRSSLKNQVYRSAEHFLEVLKSLSSSL 444 R ++V + + + R +L LL CM E+L V +L+ ++ V R+IV++YE A SP AE L PL++++ +LR N E +LR+ +D +R + K +RS H LEV +S S L Sbjct: 249 RANAIVAAFIETVSTV----RQQGPVLTSLLSCMTKEVLAVDILSEDLERVIRRIVSEYEHATSFASLAFLSSPEDAAEHKLTPLILDYLRYLRVNWQNAEASCELEEMLRNCMDPQMRKTFKTVEFRSIGHLLEVCQSFRSEL 388
BLAST of mRNA_Ecto-sp13_S_contig9856.21499.1 vs. uniprot
Match: A0A1Z5K489_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K489_FISSO) HSP 1 Score: 60.5 bits (145), Expect = 5.130e-6 Identity = 44/144 (30.56%), Postives = 70/144 (48.61%), Query Frame = 1 Query: 31 RVESVVRGYAANAAEILPLQRPARTLLPPLLFCMACELLHVRLLAPEVREVCRQIVTDYE-----ARAKLWMSPAQNAERFLQPLVMEFASWLRANRDILYQGSATEGLLRS-IDEGLRSSLKNQVYRSAEHFLEVLKSLSSSL 444 R ++V + + + R +L LL CM E++ V +L+ + V R+IV++YE A SP AER L PL++++ +LR N E +LR+ +D +R + K +RS H LEV +S S L Sbjct: 245 RANAIVAAFIETVSTV----RQQGPVLTRLLSCMTKEVIAVEILSEGLERVIRRIVSEYEHATSFASLAFLSSPENAAERKLTPLILDYLRYLRVNWQNAEASCELEEMLRNCMDPQMRRTFKTVEFRSIGHLLEVCQSFRSEL 384
BLAST of mRNA_Ecto-sp13_S_contig9856.21499.1 vs. uniprot
Match: A0A067BJU8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BJU8_SAPPC) HSP 1 Score: 55.1 bits (131), Expect = 6.580e-5 Identity = 35/106 (33.02%), Postives = 58/106 (54.72%), Query Frame = 1 Query: 1045 DQC---AWRVLHAASRTASGGDSFFVVQDLFGGEGVLVKMATAPTEPIRI-----RTKGLAVRVTTVDKHDIYHISDVD--MTTCEASPRPLMTITTTMKEIIQFA 1332 DQC + R++ SRT SG DS+F +Q+LFG G+L+K T P+ I +T R++ + + IY D++ +T + + PL+ I T + E++ FA Sbjct: 100 DQCLEASDRIMRRCSRTHSGTDSYFALQELFGTTGLLIKPRPGGTPPLDISLGRDKTGSFKCRISAANLYAIYRHDDIEQLLTHSDHTLAPLVEIDTVIVEVMSFA 205
BLAST of mRNA_Ecto-sp13_S_contig9856.21499.1 vs. uniprot
Match: T0SI70_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SI70_SAPDV) HSP 1 Score: 55.1 bits (131), Expect = 6.580e-5 Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = 1 Query: 1045 DQC---AWRVLHAASRTASGGDSFFVVQDLFGGEGVLVKMATAPTEPIRIR-----TKGLAVRVTTVDKHDIYHISDVD--MTTCEASPRPLMTITTTMKEIIQFA 1332 DQC + R++ SRT SG DS+F +Q+LFG G+L+K T P+ IR T R++ + + IY D++ +T E + PL+ I T + E + FA Sbjct: 100 DQCLEASDRIMRRCSRTHSGTDSYFALQELFGATGLLIKPRPGGTPPLDIRLGRDKTGSYKCRISASNLYGIYRHDDIEQLLTHNEHTLAPLVEIDTVIVEAMSFA 205 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9856.21499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9856.21499.1 >prot_Ecto-sp13_S_contig9856.21499.1 ID=prot_Ecto-sp13_S_contig9856.21499.1|Name=mRNA_Ecto-sp13_S_contig9856.21499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=478bp MRVESVVRGYAANAAEILPLQRPARTLLPPLLFCMACELLHVRLLAPEVRback to top mRNA from alignment at Ecto-sp13_S_contig9856:434..5929- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9856.21499.1 ID=mRNA_Ecto-sp13_S_contig9856.21499.1|Name=mRNA_Ecto-sp13_S_contig9856.21499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5496bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9856:434..5929- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9856:434..5929- >mRNA_Ecto-sp13_S_contig9856.21499.1 ID=mRNA_Ecto-sp13_S_contig9856.21499.1|Name=mRNA_Ecto-sp13_S_contig9856.21499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1434bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9856:434..5929- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |