mRNA_Ecto-sp13_S_contig9855.21497.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9855.21497.1
Unique NamemRNA_Ecto-sp13_S_contig9855.21497.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9855.21497.1 vs. uniprot
Match: A0A6H5JIK1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIK1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.210e-28
Identity = 58/79 (73.42%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:    1 VQKKIDDLTRLDRSLYEAGKKEFEKRLAPYASSVEEDIPRFQELQSAISEYLKGNSSSKANAMYRSMNVYKEPPDNHLF 237
            VQ KIDDLTRLDR LYEAGK EFEKRLAPYASSV+EDIP+FQELQ  I +YL GNSSS A  MY +M++YK+  DN+LF
Sbjct:  270 VQNKIDDLTRLDRVLYEAGKDEFEKRLAPYASSVQEDIPQFQELQGVIKDYLNGNSSSLAYQMYLNMHIYKKRLDNYLF 348
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BLAST of mRNA_Ecto-sp13_S_contig9855.21497.1 vs. uniprot
Match: D8LRU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRU7_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.500e-27
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:   73 KRLAPYASSVEEDIPRFQELQSAISEYLKGNSSSKANAMYRSMNVYKEPPDNHLF 237
            KRLAPYASSVEEDIPRFQELQSAISEYLKGNSSSKAN MYRSMNVYKEPPDNHLF
Sbjct:  277 KRLAPYASSVEEDIPRFQELQSAISEYLKGNSSSKANTMYRSMNVYKEPPDNHLF 331
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BLAST of mRNA_Ecto-sp13_S_contig9855.21497.1 vs. uniprot
Match: A0A6H5L8E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8E6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 4.330e-16
Identity = 43/80 (53.75%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    1 VQKKIDDLTRLDRSLYEAGKKEFEKRLAPYASSVEEDIPRFQELQSAISEYLKGNSSSKANAMYRSMN-VYKEPPDNHLF 237
            VQ +ID+LT LD++LY+AGKKEFEKRL+  ++S + ++  FQELQ  +  YL+GNSS  A  MYRSM+ VY +PP  + F
Sbjct:  280 VQARIDELTILDQALYDAGKKEFEKRLSSTSTSFQAELAGFQELQDNVCTYLEGNSSGLAREMYRSMDAVYTDPPPAYHF 359
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BLAST of mRNA_Ecto-sp13_S_contig9855.21497.1 vs. uniprot
Match: A0A6H5JMW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.360e-13
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:    1 VQKKIDDLTRLDRSLYEAGKKEFEKRLAPYASSVEEDIPRFQELQSAISEYLKGNSSSKANAMY--RSMNVYKEPP 222
            VQ+KID+LT LDR LY+AG   FE+ LAP+ + V+ D+  F+ELQ+ ++EYL+ N SS A A+Y  ++   Y++PP
Sbjct:  377 VQEKIDELTTLDRRLYDAGVAAFEESLAPFTAQVDADLEGFRELQTVVNEYLRDNPSSPAQALYSYKTAVYYEDPP 452
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BLAST of mRNA_Ecto-sp13_S_contig9855.21497.1 vs. uniprot
Match: D8LRU8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU8_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 2.870e-9
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:    1 VQKKIDDLTRLDRSLYEAGKKEFEKR--LAPYASSVEEDIPRFQELQSAISEYLKGNSSSKANAMYRSMNVYKE 216
            VQ+ ID  T LDR LY A K E+EKR  L P    +EED+  F ELQ  +  YL  N +SKANAMY++ N+Y +
Sbjct:  326 VQQIIDQHTELDRVLYNAAKLEYEKRRDLIP-PPLLEEDLVEFHELQRTVGAYLVDNPTSKANAMYKTANIYAQ 398
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9855.21497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JIK1_9PHAE2.210e-2873.42Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LRU7_ECTSI2.500e-2798.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8E6_9PHAE4.330e-1653.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMW5_9PHAE3.360e-1348.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRU8_ECTSI2.870e-950.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9855contigEcto-sp13_S_contig9855:805..1844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size240
Hectar predicted targeting categoryother localisation
Exons3
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464247.6246274-CDS-Ecto-sp13_S_contig9855:804..8561681464247.6246274-CDS-Ecto-sp13_S_contig9855:804..856Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9855 805..856 -
1681464247.6366627-CDS-Ecto-sp13_S_contig9855:1229..13421681464247.6366627-CDS-Ecto-sp13_S_contig9855:1229..1342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9855 1230..1342 -
1681464247.6544602-CDS-Ecto-sp13_S_contig9855:1769..18441681464247.6544602-CDS-Ecto-sp13_S_contig9855:1769..1844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9855 1770..1844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9855.21497.1prot_Ecto-sp13_S_contig9855.21497.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9855 805..1844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9855.21497.1

>prot_Ecto-sp13_S_contig9855.21497.1 ID=prot_Ecto-sp13_S_contig9855.21497.1|Name=mRNA_Ecto-sp13_S_contig9855.21497.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
VQKKIDDLTRLDRSLYEAGKKEFEKRLAPYASSVEEDIPRFQELQSAISE
YLKGNSSSKANAMYRSMNVYKEPPDNHLF*
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mRNA from alignment at Ecto-sp13_S_contig9855:805..1844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9855.21497.1 ID=mRNA_Ecto-sp13_S_contig9855.21497.1|Name=mRNA_Ecto-sp13_S_contig9855.21497.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1040bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9855:805..1844- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAAAAAAAAATCGATGACCTCACAAGGCTGGATCGATCCCTATATGA
AGCGGGCAAAAAGGAGTTCGAGAAGGTATGGGATTCAAACCGTTCAATGT
TAGACAAGACAAGCTACAACAACTTCTAGGTCATCACCCTCGTTCCACTC
ATCACTGAAGTGAGGAATCTCCGAAGTGAGCGCCATGTCGCGCGCCCTGT
CGTCTTTTGACTTTGTTTGACAGCCAATGTTAATGTTCTCTCCGACCCAG
ATGCATGAAGGCAAGGAAGGACCTTCATTCCGAAAGAACGCCGCTGATAG
CGGAAACGACAACATTCCCATGATACAATCGGGTCAACCAGCCGAAAGAC
GCAGTGCACTATGGGTAGTCGGGGGGCTAAAATGTTAGATTTCGACACTT
TCGTACGCCTCGTGTTCCACGTACTAAAAACATACATACTTAGTATTTAG
TTCCCAACCGATACCTAGAACGGGTTTGCTGTGCCGGACGTTTTTCTGGC
AGCGGTTGGCACCGTACGCGAGCTCGGTGGAAGAGGATATTCCGCGGTTT
CAGGAGCTGCAGAGCGCTATCAGCGAGTATTTGAAAGGGAATTCCTCGAG
CAAGGCCAACGCGATGTAAGCACGGGGTTACTCCCTATAGACCTCTAACA
CACGCCACTCACTGCTCTGCTGTGGGCAAGTCCAAAAGTTGCAGTGTAAG
CATCTTCACGTTGTTGGCCGTCGATCTTTGAACCCGTGGCGTGTGTGTTG
TTGTTCGTTGGTTCCATCTATTCTGGGCACCAGTCTCAACCTGTAATAGT
CTAGACTATGTTTGATGCACCGGCCGGGATCACACGAAGAAGGTACACAC
CTTGGAGTTCGTTGTCTCCACCGTTCTTTCTGCAATTCTTTTGAGTTCCT
TCAATTTGTTGCTAAGGGATGAAAATGTATGCAAACACACCCTCATCATG
TTCCACCTACTGCGTGCTGTCTTCACGTCTCGCCGCAGGTATCGAAGCAT
GAACGTCTACAAGGAACCGCCCGACAACCACCTTTTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9855:805..1844-

>mRNA_Ecto-sp13_S_contig9855.21497.1 ID=mRNA_Ecto-sp13_S_contig9855.21497.1|Name=mRNA_Ecto-sp13_S_contig9855.21497.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9855:805..1844- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAAAAAAAAATCGATGACCTCACAAGGCTGGATCGATCCCTATATGA
AGCGGGCAAAAAGGAGTTCGAGAAGCGGTTGGCACCGTACGCGAGCTCGG
TGGAAGAGGATATTCCGCGGTTTCAGGAGCTGCAGAGCGCTATCAGCGAG
TATTTGAAAGGGAATTCCTCGAGCAAGGCCAACGCGATGTATCGAAGCAT
GAACGTCTACAAGGAACCGCCCGACAACCACCTTTTCTAA
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