mRNA_Ecto-sp13_S_contig98519.21493.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D7FH82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH82_ECTSI) HSP 1 Score: 114 bits (286), Expect = 2.980e-28 Identity = 57/76 (75.00%), Postives = 61/76 (80.26%), Query Frame = 1 Query: 1 TPSQHSALWHDCDEDDALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDALESCSG 228 T SQ W DCDEDD LAR+ DF PSAE+QLDA +STCTFWCAVALGALVKGGP TSV RY ELARDA+ES SG Sbjct: 37 TLSQKPVFWRDCDEDDVLAREGDFRMPSAENQLDAGSSTCTFWCAVALGALVKGGPVTSVARYSELARDAVESYSG 112
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: A0A6H5JZG3_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG3_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 3.130e-16 Identity = 42/60 (70.00%), Postives = 45/60 (75.00%), Query Frame = 1 Query: 1 TPSQHSALWHDCDEDDALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSV 180 TPSQ SA DCDEDD LA++ D SAE+QLDA STCTFWCAVALGALVKGG SV Sbjct: 146 TPSQKSAFGRDCDEDDVLAKEGDIRILSAENQLDAGPSTCTFWCAVALGALVKGGGVASV 205
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D7FH84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH84_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 4.020e-16 Identity = 39/50 (78.00%), Postives = 41/50 (82.00%), Query Frame = 1 Query: 79 PSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDALESCSG 228 P AE+QLDA STCTFWCAVALGALVKGGP TSV R ELARDA+E SG Sbjct: 25 PPAENQLDAGPSTCTFWCAVALGALVKGGPATSVARSSELARDAVERHSG 74
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D8LU07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU07_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 5.060e-11 Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1 Query: 10 QHSALWHDCDED---DALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDAL 213 Q SA+ DCD++ DA+AR + S +QL STCTFWCA+ALGAL +G P SV +Y ELA++AL Sbjct: 40 QQSAVEADCDDERSYDAIARGAHWIQASERNQLPRDPSTCTFWCAIALGALAEGSPIQSVYKYSELAQEAL 110
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D7FZI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI7_ECTSI) HSP 1 Score: 63.9 bits (154), Expect = 2.650e-10 Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 1 Query: 1 TPSQHSALWHDCDED---DALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDAL 213 T Q SA+ D E DA+ R D+S S HQ+ S+CTFWCA+ALGALVKG P SV +Y +LA +AL Sbjct: 34 TTLQSSAVGGDFGEQGRFDAIVRGADWSKASEGHQIPMNPSSCTFWCAIALGALVKGHPIGSVTKYSQLAHEAL 107
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D8LU13_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU13_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 2.800e-10 Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 1 Query: 10 QHSALWHDCDED---DALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDAL 213 Q A+ CDE+ DA+AR ED S HQ +CTFWCA+ALGAL KG P SV +Y +LA +AL Sbjct: 158 QRPAVGGGCDEEALFDAIARGEDLINASEGHQHPMNPRSCTFWCAIALGALAKGSPFESVAKYSQLAHEAL 228
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D8LCV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI) HSP 1 Score: 63.9 bits (154), Expect = 3.520e-10 Identity = 37/73 (50.68%), Postives = 43/73 (58.90%), Query Frame = 1 Query: 7 SQHSALWHDCDED----DALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDAL 213 SQ S DCDE +A+A D S SA +Q S CTFWCAVALGAL KG P SV Y +LA++AL Sbjct: 62 SQQSVFGDDCDEGGHYFEAVAPGGDLSKTSARNQFPMDPSACTFWCAVALGALAKGSPIESVTSYAQLAQEAL 134
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 5.340e-10 Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1 Query: 4 PSQHSALWHDCDEDDALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDAL 213 P Q SA+ C E + R ++ S +QL ASTCTFWCA+ALGAL KG P SV +Y LA +AL Sbjct: 161 PLQQSAIGGACSEVGTMVRAPCWNEASERNQLPMDASTCTFWCAIALGALAKGSPVESVAKYRHLAHEAL 230
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D8LCW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW5_ECTSI) HSP 1 Score: 63.2 bits (152), Expect = 7.230e-10 Identity = 38/73 (52.05%), Postives = 43/73 (58.90%), Query Frame = 1 Query: 7 SQHSALWHDCDED----DALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDAL 213 SQ L DCDE +A+AR D S SA ++L S CTFWCAVALGAL KG P SV Y LA+ AL Sbjct: 39 SQQPVLGDDCDEGGHYFEAVARGGDLSKTSAGNRLPMDPSACTFWCAVALGALAKGSPIESVTSYARLAQAAL 111
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D8LCU9_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU9_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 1.360e-9 Identity = 38/73 (52.05%), Postives = 44/73 (60.27%), Query Frame = 1 Query: 7 SQHSALWHDCDEDD----ALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDAL 213 SQ L +CDE + A+A D S SA +QL S CTFWCAVALGALVKG P SV Y +LA +AL Sbjct: 98 SQQPVLGDNCDEGERYFEAVAPGGDLSKISAGNQLAMDPSACTFWCAVALGALVKGSPIESVTSYAQLAEEAL 170 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig98519.21493.1 >prot_Ecto-sp13_S_contig98519.21493.1 ID=prot_Ecto-sp13_S_contig98519.21493.1|Name=mRNA_Ecto-sp13_S_contig98519.21493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp TPSQHSALWHDCDEDDALARDEDFSTPSAEHQLDAAASTCTFWCAVALGAback to top mRNA from alignment at Ecto-sp13_S_contig98519:2..509+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig98519.21493.1 ID=mRNA_Ecto-sp13_S_contig98519.21493.1|Name=mRNA_Ecto-sp13_S_contig98519.21493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=508bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98519:2..509+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98519:2..509+ >mRNA_Ecto-sp13_S_contig98519.21493.1 ID=mRNA_Ecto-sp13_S_contig98519.21493.1|Name=mRNA_Ecto-sp13_S_contig98519.21493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98519:2..509+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |