mRNA_Ecto-sp13_S_contig98519.21493.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig98519.21493.1
Unique NamemRNA_Ecto-sp13_S_contig98519.21493.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D7FH82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH82_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 2.980e-28
Identity = 57/76 (75.00%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    1 TPSQHSALWHDCDEDDALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDALESCSG 228
            T SQ    W DCDEDD LAR+ DF  PSAE+QLDA +STCTFWCAVALGALVKGGP TSV RY ELARDA+ES SG
Sbjct:   37 TLSQKPVFWRDCDEDDVLAREGDFRMPSAENQLDAGSSTCTFWCAVALGALVKGGPVTSVARYSELARDAVESYSG 112          
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: A0A6H5JZG3_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG3_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.130e-16
Identity = 42/60 (70.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 TPSQHSALWHDCDEDDALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSV 180
            TPSQ SA   DCDEDD LA++ D    SAE+QLDA  STCTFWCAVALGALVKGG   SV
Sbjct:  146 TPSQKSAFGRDCDEDDVLAKEGDIRILSAENQLDAGPSTCTFWCAVALGALVKGGGVASV 205          
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D7FH84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH84_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.020e-16
Identity = 39/50 (78.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:   79 PSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDALESCSG 228
            P AE+QLDA  STCTFWCAVALGALVKGGP TSV R  ELARDA+E  SG
Sbjct:   25 PPAENQLDAGPSTCTFWCAVALGALVKGGPATSVARSSELARDAVERHSG 74          
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D8LU07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU07_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 5.060e-11
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   10 QHSALWHDCDED---DALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDAL 213
            Q SA+  DCD++   DA+AR   +   S  +QL    STCTFWCA+ALGAL +G P  SV +Y ELA++AL
Sbjct:   40 QQSAVEADCDDERSYDAIARGAHWIQASERNQLPRDPSTCTFWCAIALGALAEGSPIQSVYKYSELAQEAL 110          
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D7FZI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI7_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.650e-10
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    1 TPSQHSALWHDCDED---DALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDAL 213
            T  Q SA+  D  E    DA+ R  D+S  S  HQ+    S+CTFWCA+ALGALVKG P  SV +Y +LA +AL
Sbjct:   34 TTLQSSAVGGDFGEQGRFDAIVRGADWSKASEGHQIPMNPSSCTFWCAIALGALVKGHPIGSVTKYSQLAHEAL 107          
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D8LU13_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU13_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.800e-10
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   10 QHSALWHDCDED---DALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDAL 213
            Q  A+   CDE+   DA+AR ED    S  HQ      +CTFWCA+ALGAL KG P  SV +Y +LA +AL
Sbjct:  158 QRPAVGGGCDEEALFDAIARGEDLINASEGHQHPMNPRSCTFWCAIALGALAKGSPFESVAKYSQLAHEAL 228          
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D8LCV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 3.520e-10
Identity = 37/73 (50.68%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    7 SQHSALWHDCDED----DALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDAL 213
            SQ S    DCDE     +A+A   D S  SA +Q     S CTFWCAVALGAL KG P  SV  Y +LA++AL
Sbjct:   62 SQQSVFGDDCDEGGHYFEAVAPGGDLSKTSARNQFPMDPSACTFWCAVALGALAKGSPIESVTSYAQLAQEAL 134          
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 5.340e-10
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    4 PSQHSALWHDCDEDDALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDAL 213
            P Q SA+   C E   + R   ++  S  +QL   ASTCTFWCA+ALGAL KG P  SV +Y  LA +AL
Sbjct:  161 PLQQSAIGGACSEVGTMVRAPCWNEASERNQLPMDASTCTFWCAIALGALAKGSPVESVAKYRHLAHEAL 230          
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D8LCW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW5_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 7.230e-10
Identity = 38/73 (52.05%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    7 SQHSALWHDCDED----DALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDAL 213
            SQ   L  DCDE     +A+AR  D S  SA ++L    S CTFWCAVALGAL KG P  SV  Y  LA+ AL
Sbjct:   39 SQQPVLGDDCDEGGHYFEAVARGGDLSKTSAGNRLPMDPSACTFWCAVALGALAKGSPIESVTSYARLAQAAL 111          
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Match: D8LCU9_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU9_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.360e-9
Identity = 38/73 (52.05%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    7 SQHSALWHDCDEDD----ALARDEDFSTPSAEHQLDAAASTCTFWCAVALGALVKGGPGTSVERYFELARDAL 213
            SQ   L  +CDE +    A+A   D S  SA +QL    S CTFWCAVALGALVKG P  SV  Y +LA +AL
Sbjct:   98 SQQPVLGDNCDEGERYFEAVAPGGDLSKISAGNQLAMDPSACTFWCAVALGALVKGSPIESVTSYAQLAEEAL 170          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98519.21493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH82_ECTSI2.980e-2875.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZG3_9PHAE3.130e-1670.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FH84_ECTSI4.020e-1678.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU07_ECTSI5.060e-1150.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZI7_ECTSI2.650e-1050.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU13_ECTSI2.800e-1049.30Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LCV1_ECTSI3.520e-1050.68Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JYW4_9PHAE5.340e-1048.57Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LCW5_ECTSI7.230e-1052.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCU9_ECTSI1.360e-952.05Zn(2)-C6 fungal-type domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig98519contigEcto-sp13_S_contig98519:2..509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size229
Hectar predicted targeting categoryother localisation
Exons2
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464247.3846583-CDS-Ecto-sp13_S_contig98519:1..1781681464247.3846583-CDS-Ecto-sp13_S_contig98519:1..178Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98519 2..178 +
1681464247.3978703-CDS-Ecto-sp13_S_contig98519:457..5081681464247.3978703-CDS-Ecto-sp13_S_contig98519:457..508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98519 458..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig98519.21493.1prot_Ecto-sp13_S_contig98519.21493.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig98519 2..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig98519.21493.1

>prot_Ecto-sp13_S_contig98519.21493.1 ID=prot_Ecto-sp13_S_contig98519.21493.1|Name=mRNA_Ecto-sp13_S_contig98519.21493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
TPSQHSALWHDCDEDDALARDEDFSTPSAEHQLDAAASTCTFWCAVALGA
LVKGGPGTSVERYFELARDALESCSG
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mRNA from alignment at Ecto-sp13_S_contig98519:2..509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig98519.21493.1 ID=mRNA_Ecto-sp13_S_contig98519.21493.1|Name=mRNA_Ecto-sp13_S_contig98519.21493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=508bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98519:2..509+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTCCCTCACAGCACTCAGCGCTGTGGCACGACTGTGACGAGGACGATGC ACTCGCAAGAGACGAAGATTTCAGCACGCCCTCGGCCGAGCATCAGCTCG ATGCGGCCGCGTCGACCTGCACGTTTTGGTGTGCGGTTGCTCTGGGAGCG CTTGTGAAGGGGGGCCCCGGAACTTCGGTGAGTGGCACCTCGGGCCAAAG AGACGGGCGTACCCTTAAATTTGAGAAGCAGATGAGAAGAAACCTCCAAG AGCCGGTGCCGACTGACGTTGGCCAGCGTCTTGACATGCAGTATGCAAGA GCAAGCCCGTGGGGCGGGGGGGCATGGTGTTCGTATGTTTCATGGCCTAA CGCCGTCGCGTGCTATCGCTTGAACACGTTCACGGTTGAAAGGTCGTTGT TCTTTCCAATTGCCTGATGACGCGAATATCCCGATATGCGTCGTGTGTCG TCGAAGGTGGAGAGGTATTTCGAGCTGGCCAGAGATGCATTGGAAAGCTG TTCGGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98519:2..509+

>mRNA_Ecto-sp13_S_contig98519.21493.1 ID=mRNA_Ecto-sp13_S_contig98519.21493.1|Name=mRNA_Ecto-sp13_S_contig98519.21493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98519:2..509+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTCCCTCACAGCACTCAGCGCTGTGGCACGACTGTGACGAGGACGATGC
ACTCGCAAGAGACGAAGATTTCAGCACGCCCTCGGCCGAGCATCAGCTCG
ATGCGGCCGCGTCGACCTGCACGTTTTGGTGTGCGGTTGCTCTGGGAGCG
CTTGTGAAGGGGGGCCCCGGAACTTCGGTGGAGAGGTATTTCGAGCTGGC
CAGAGATGCATTGGAAAGCTGTTCGGGC
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