mRNA_Ecto-sp13_S_contig9851.21492.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE) HSP 1 Score: 222 bits (565), Expect = 6.800e-70 Identity = 110/141 (78.01%), Postives = 120/141 (85.11%), Query Frame = -2 Query: 7 LGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 429 LGGLVNEHGDLTR INYRSR AWAC+RRYG ELFDRP APFRLKIRLL AE MEALLY CMTW P +TLR+IHHRLL+RVIGY+R+K TYRQ YAQTL+RV C+SVE T+RQRRLLFAGAL RQP GRLPKR+M G Sbjct: 81 LGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFG 221
BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5LCI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCI9_9PHAE) HSP 1 Score: 221 bits (564), Expect = 1.640e-69 Identity = 111/141 (78.72%), Postives = 119/141 (84.40%), Query Frame = -2 Query: 7 LGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 429 LGGLVNEHGDLTR INYRSR AWAC+RRYG ELFDRPNAPFRLKIRLL AE MEALLY CMTW P +TLR+IHHRLL+RVIGY+R+K TYRQ YAQTLKRV CQSVE T+RQRRLL AGAL QP GRLPKR+M G Sbjct: 117 LGGLVNEHGDLTREINYRSRGAWACLRRYGWELFDRPNAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVQCQSVEATIRQRRLLIAGALATQPDGRLPKRLMFG 257
BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE) HSP 1 Score: 236 bits (603), Expect = 1.710e-69 Identity = 117/141 (82.98%), Postives = 124/141 (87.94%), Query Frame = -2 Query: 7 LGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 429 LGGLVNEHGDLTR INYR++ AWACVRRYG ELFDRP APFRLK RLL AE MEALLY CMTW PRQ Q RTLRTIHHRLL+RV+GYQR K TYRQ YAQTLKRVGCQSVE+T+RQRRLLFAGAL RQP GRLPKR+MLG Sbjct: 646 LGGLVNEHGDLTREINYRNKAAWACVRRYGQELFDRPRAPFRLKTRLLQAEAMEALLYGCMTWAPRQDQYRTLRTIHHRLLLRVVGYQRMKCTYRQLSYAQTLKRVGCQSVESTIRQRRLLFAGALARQPDGRLPKRLMLG 786
BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE) HSP 1 Score: 219 bits (557), Expect = 8.620e-69 Identity = 108/141 (76.60%), Postives = 119/141 (84.40%), Query Frame = -2 Query: 7 LGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 429 LGGLVNEHGDLTR INYRSR AWAC+RRYG ELFDRP APFRLKIRLL AE MEALLY CMTW P +TLR+IHHRLL+RV+GY+R+K TYRQ +AQTLKRV CQSV T+RQRR+LFAGAL RQP GRLPKR+M G Sbjct: 81 LGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVVGYKRKKDTYRQLGHAQTLKRVECQSVAATIRQRRILFAGALTRQPDGRLPKRLMFG 221
BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5KBN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN1_9PHAE) HSP 1 Score: 217 bits (552), Expect = 9.210e-68 Identity = 108/141 (76.60%), Postives = 116/141 (82.27%), Query Frame = -2 Query: 7 LGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 429 LGGLVNEHGDLTR INYRSR AWAC+RRY ELFDRP APFRLKI L AE MEALLY CMTW P +TLR+IHHRLL+RVIGY R++ TYRQ Y QTLKRVGCQSVE T+RQRRLLFAGA RQP GRLPKR+MLG Sbjct: 116 LGGLVNEHGDLTREINYRSRGAWACLRRYDRELFDRPKAPFRLKIHLRQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYMRKEDTYRQLSYPQTLKRVGCQSVEATIRQRRLLFAGAFARQPDGRLPKRLMLG 256
BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5JBT6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT6_9PHAE) HSP 1 Score: 221 bits (562), Expect = 9.640e-68 Identity = 110/141 (78.01%), Postives = 119/141 (84.40%), Query Frame = -2 Query: 7 LGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 429 LGGLVNEHGDLTR NYRSR AWAC+RRYG ELFDRP APFRLKIRLL AE M+ALLY CMTW P +TLR+IHHRLL+RVIGY+R+K TYRQ YAQTLKRV CQSVE T+RQRRLLFAGAL RQP GRLPKR+M G Sbjct: 225 LGGLVNEHGDLTRENNYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMDALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFG 365
BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5JS19_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS19_9PHAE) HSP 1 Score: 221 bits (563), Expect = 1.680e-67 Identity = 109/129 (84.50%), Postives = 115/129 (89.15%), Query Frame = -2 Query: 7 RGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 393 R INY+SR AWAC+RRYG +LFD+PNAPFRLK RLL AE MEALLY CMTW PRQ Q RTLRTIHHRLL+RVIGYQREKGTYRQ YAQTLKRVGCQSVETT+RQRRLLFAGAL RQP GRLPKRVMLG Sbjct: 281 REINYQSRAAWACIRRYGQDLFDKPNAPFRLKTRLLQAEAMEALLYGCMTWAPRQDQYRTLRTIHHRLLLRVIGYQREKGTYRQLSYAQTLKRVGCQSVETTIRQRRLLFAGALARQPDGRLPKRVMLG 409
BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5JPL3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL3_9PHAE) HSP 1 Score: 223 bits (569), Expect = 1.040e-66 Identity = 111/140 (79.29%), Postives = 117/140 (83.57%), Query Frame = -2 Query: 7 GGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 426 GGLVNEHGDLT+ INYRS AWACVRRYG ELF RP APFRLK RLL AE M+A+LY CMTW PR QCRTLRTIHHRLL+R IGYQR KGTYRQ YA+TLKRVGCQ VE T+RQR LLFAGAL RQP GRLPKRVM G Sbjct: 391 GGLVNEHGDLTQNINYRSGAAWACVRRYGQELFHRPRAPFRLKTRLLQAEAMKAMLYGCMTWAPRPDQCRTLRTIHHRLLLRDIGYQRNKGTYRQLPYAETLKRVGCQRVENTIRQRCLLFAGALARQPDGRLPKRVMPG 530
BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE) HSP 1 Score: 213 bits (542), Expect = 2.830e-66 Identity = 104/141 (73.76%), Postives = 118/141 (83.69%), Query Frame = -2 Query: 7 LGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 429 LGGLVNE GDLTR IN+RS+ AWAC++RY ELFDRP APFRLK RLL AE +EALLY CMTW PR++ L+T HHRLL+RVIGY+R++GTYRQ YAQ LKRVGCQSVE TVRQRRLLFAGA+ RQP GRLPKR+M G Sbjct: 60 LGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFG 200
BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE) HSP 1 Score: 218 bits (555), Expect = 4.110e-66 Identity = 115/168 (68.45%), Postives = 127/168 (75.60%), Query Frame = -2 Query: 7 AAPHAATADHRGSRAEVGMPRRFNSGTLGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 510 AAP T + G R+ LGGLVNEHGDLTR I++RSR AWAC+RRYG ELFDRP APFRLKIRLL AE MEALLY CMTW P +TLR+IHHRLL+RVIGY+R+K TYRQ YAQTLKRV CQSVE T+RQRRLL AGAL RQ GRLPKR+MLG Sbjct: 58 AAPPPLTIEAAGQNYAQTTEFRY----LGGLVNEHGDLTREISHRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLLAGALARQSDGRLPKRLMLG 221 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9851.21492.1 >prot_Ecto-sp13_S_contig9851.21492.1 ID=prot_Ecto-sp13_S_contig9851.21492.1|Name=mRNA_Ecto-sp13_S_contig9851.21492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp QIAEHHPLRESSAWLPYQRSREQQAPLPDSGFHALAPYPLQGLGVETLPVback to top mRNA from alignment at Ecto-sp13_S_contig9851:4399..4984+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9851.21492.1 ID=mRNA_Ecto-sp13_S_contig9851.21492.1|Name=mRNA_Ecto-sp13_S_contig9851.21492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=586bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9851:4399..4984+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9851:4399..4984+ >mRNA_Ecto-sp13_S_contig9851.21492.1 ID=mRNA_Ecto-sp13_S_contig9851.21492.1|Name=mRNA_Ecto-sp13_S_contig9851.21492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9851:4399..4984+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |