Homology
BLAST of mRNA_Ecto-sp13_S_contig985.21491.1 vs. uniprot
Match: A0A6H5JZM6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZM6_9PHAE) HSP 1 Score: 140 bits (354), Expect = 2.630e-36 Identity = 110/248 (44.35%), Postives = 138/248 (55.65%), Query Frame = 1 Query: 289 QQTLENPNFAGELPTSDDVPPAESQLAPPPVAEPRDPP--SGGHVENKGFAPPNVHCTATTPPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSSTRSRIQRVVDNHPDLLAEGSISELPPHIMTLMHRLFDTARQNQGRTQLLRSAPSSGGDPSTTPRSTPRNDNNRGG-GNSSRSAPRERSRCSHPSCKKPLGHTTDTCFQRKREKVQATKNHRENTRPVAKRSCAEDRIPR-KDQNNDD 1020
Q +L N GELPT D P +L+ PPVAE RD P SGGHVE KGF PP+ + XXXXXX ++ST S+IQ VVD H DL+ +G + +LP H++ LM R+F+ RQN+GRT +S S PR+ +RG GNS R +ER RC+HP+C KPLGHTT TCFQ+KRE+ +N R N +P AKR CAEDR PR KD + DD
Sbjct: 10 QLSLSNLANNGELPT--DQP---GELSVPPVAEARDTPPTSGGHVEAKGFDPPSPXXX------NVQDLVIXXXXXXSVASTAAPSVGAPSASSSSTDLTSTLSKIQSVVDRHLDLVTDGRLEQLPDHVVQLMDRMFEHHRQNRGRTPAFQSGSSXXXXXXXXXXXAPRHGTHRGXXGNSRRPVRKERPRCTHPTCDKPLGHTTATCFQKKREEAATERNRRRN-QPTAKRPCAEDRTPRSKDASTDD 245
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 1029 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 780 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681464247.237135-UTR-Ecto-sp13_S_contig985:10262..10511 | 1681464247.237135-UTR-Ecto-sp13_S_contig985:10262..10511 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig985 10263..10511 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681464247.2482853-CDS-Ecto-sp13_S_contig985:10511..10952 | 1681464247.2482853-CDS-Ecto-sp13_S_contig985:10511..10952 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig985 10512..10952 + |
| 1681464247.2673583-CDS-Ecto-sp13_S_contig985:12830..13169 | 1681464247.2673583-CDS-Ecto-sp13_S_contig985:12830..13169 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig985 12831..13169 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig985.21491.1 >prot_Ecto-sp13_S_contig985.21491.1 ID=prot_Ecto-sp13_S_contig985.21491.1|Name=mRNA_Ecto-sp13_S_contig985.21491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
MSFELTEQQLLEEQQTLENPNFAGELPTSDDVPPAESQLAPPPVAEPRDP
PSGGHVENKGFAPPNVHCTATTPPPSPTPSATPAPSPSVTSSATPSAGAP
SIAPSASTNMSSTRSRIQRVVDNHPDLLAEGSISELPPHIMTLMHRLFDT
ARQNQGRTQLLRSAPSSGGDPSTTPRSTPRNDNNRGGGNSSRSAPRERSR
CSHPSCKKPLGHTTDTCFQRKREKVQATKNHRENTRPVAKRSCAEDRIPR
KDQNNDDSDA back to topmRNA from alignment at Ecto-sp13_S_contig985:10263..13169+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig985.21491.1 ID=mRNA_Ecto-sp13_S_contig985.21491.1|Name=mRNA_Ecto-sp13_S_contig985.21491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2907bp|location=Sequence derived from alignment at Ecto-sp13_S_contig985:10263..13169+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCCTCTTCAACCCTCCTCTGTCACTCTTATTCTTCCCCTCTCTTCCCA
GAGACCACACCGTTCGCTCTTCCTAGAGATATACTTCTGTCCAGCAAATC
TGGACACTAGCGGCTTCCCACCGTCGCTCTGGAAGTCTCCTCTGGTCGTA
TAGTCGGGAGAAGGTTCAACCCCTTCCGTCGGTCTGAGATAGGTCACCCT
TGTCTGGCGTCAGCGAGCAGGTTTCCATCTGTACCGTCCTATCTCGACCA
TGTCTTTCGAGCTCACCGAGCAGCAGCTCCTCGAGGAACAACAAACGCTT
GAGAACCCCAACTTCGCCGGAGAACTCCCTACCTCCGACGACGTCCCGCC
GGCGGAGTCACAACTCGCTCCCCCCCCTGTCGCCGAACCACGCGACCCTC
CTTCCGGCGGCCACGTCGAGAATAAAGGGTTCGCCCCACCGAATGTCCAC
TGTACAGCGACCACCCCTCCACCGTCCCCTACCCCGTCCGCGACTCCAGC
GCCATCCCCGTCCGTGACTTCATCCGCCACGCCGTCCGCTGGTGCTCCAT
CGATCGCGCCGTCCGCATCCACCAACATGTCCAGTACGAGAAGCCGGATC
CAGCGGGTGGTCGACAACCATCCAGATCTCCTGGCTGAGGGGAGCATCTC
GGAACTACCCCCACACATCATGACCCTGATGCACCGGCTGGTAAGCTTGC
AGGAGGCCAACACGGCAGCTGAGCGTGTGTCCCAGTCTGTCTTGTCTGTC
GACGCTATGTCGCACGCCCCGTCTGTCCCGGGTTTGACTAGGTCATTTGC
CGCTGCGTTGGCACGCCAAATACATGTCGTGTTGGGCCCCACCGATGTCA
AACAACCCCCCCGCCTCAATGGCAAGAGCGAGGTTGATGTCACTTCCGTC
CTGTCCCAGTTCCGCTTGATCGCTGGCAGCGCAACGCTGCAAAAAAAGAT
GCATTTCTGCAACTTTTCTTGCAGCTTTGCACATGTACGCTCAGTATGGG
AGCTAAAAGTTGCGCAAAAAGTTCTGCAACTTTTTTTCCGGAGCGAAAAG
CTGCAGTTTGGCCGAAAAGTTTTTCAGCTTTTCTCGAGTCGGGAAGGGGC
GAGAAAAGCTGCACGGCGGAAACTATACTGGTTCACGTCAAGCTGCTACC
CCTACCGCACACGCAGACCCTCTCCAGCATCGATTGTGGGAAGACTGTGA
TCACCGACATCTCGACAAAAACTTTACGAGTTGCCTCATGAATGGTACCT
GGAAGGAGGTGATGCCATGGGCTGATGGGCAATGCCAAGGTTTGCGGCCG
TGAGGTGCAGAATGTGCCGGGAAAAAAAGTTTGTGCCGTCAACGGCCGCT
AGCGGTTGGTTCAAGCTCGACGTTTTTGACCGCCACGGGTTTGGTTATCC
ACCGATAACTTTCCGAACGAGGAAGCAACAGCAATAGTAAGGCCGCTCGG
TGGGAGGTAGCTCTGTGCTTCATCTCTCATGCCCAAGGTTTGGTGCCGTG
GGGTATCGTGCGCATCGGGAAACAAGTTTTGATCGTACCCACGTCAGAGA
TCAGTTGGTTCTAGTTCGAAGGGATTGTGTGCGCATCGTTTGGTTTTCCA
GCGACAACTTTTCGAAGGAGAAGGCAACAGCAACAGCAATGCCACCCCGA
GGGAGCTGGCTACGCCCAGCATCTTTCTGGTACGAGGTTAGATGCCTTGG
GGTATCGTAAGTGTGGAGAAAAAATGTTGCAACTACACTCTCCCGCACGC
TCTTTAACCGGTTCTTCTTTGGCGGTGCAATATGAAGAGCGCGTGCCTTC
TCTCCGTTGCTGAAAAAAAGAAGATCACGCCTCCGCATGCCGCCGGTCCC
GTACACAAAACTTTTCTTCGTCCCACAAAGAGCATGCATCAAAAGTTCCG
TTGACAAAGTTTGAAGGAAAAGCTGCCGGAAAAGTTTGCAGCTTTTCTTG
CAGCATTGTGCCGCCATAAAAAGCGGTGTAACCCCACCATCATCTCTGTC
TCCGGACTCGAAAAACGCGGTGATGCGGTCGCGTTCGAATCGTTCTCCCT
CATCTGCGACGGTCCCGTGTTGCAGATGTATCAAGAGATGATGTCGGGTA
AGATCGATTGTTCCTGCGCCGCTGTCTCTCACGGGACTGTACAACAAGCA
AACTCTTACCCCCCGCCTGCCACATGGGTAGAGCTCGAAATAGCTCTCCT
ACACCGTCTCATGCCCTCCAACATAGTCGAGGAGAATGCACTTCACCTTG
TCAACCTTCGTCGAGCAGGCAATGACAACCTTAGCTCGTATGCCCTTCGT
TTTCAAACAGATTGCACTCGGTTTGAACAAGCTGTCGAACGAATCACTCC
GGGTCGCTCGCCGTATCAAGCGCTCGTGGTAATTCTGTTTCAAAACGGCC
TTGTCCCGAACATTCGGTCCAATGCGCTAGACAAAAACCTGTCAAAGCCC
TTCGGGATGTTATCGATCGCGCTCGCCGTACCGAGTCAGCGAATCTGTCT
GATGAAACCCCCGCTGTCAGCGCTGTTTCGCTCACCCTGTCATGTCTCGC
GCCCGTCTGTCTCAAAAGTTTGACACCGCGCGGCAGAACCAGGGCCGCAC
CCAGTTACTCAGGTCGGCACCCTCGTCAGGTGGTGATCCGTCCACCACTC
CCAGGAGCACGCCACGCAACGACAACAACCGCGGCGGTGGCAACTCCTCC
CGCTCCGCCCCGAGGGAGCGCTCGCGGTGCTCGCACCCGTCGTGCAAGAA
ACCCCTCGGGCACACGACGGACACGTGTTTCCAACGGAAGCGCGAAAAAG
TCCAGGCGACCAAGAACCACCGCGAGAACACTCGCCCGGTGGCGAAAAGG
TCGTGTGCAGAGGATCGAATTCCTCGCAAAGACCAGAACAACGACGATAG
CGACGCG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig985:10263..13169+ >mRNA_Ecto-sp13_S_contig985.21491.1 ID=mRNA_Ecto-sp13_S_contig985.21491.1|Name=mRNA_Ecto-sp13_S_contig985.21491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig985:10263..13169+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTTCGAGCTCACCGAGCAGCAGCTCCTCGAGGAACAACAAACGCT
TGAGAACCCCAACTTCGCCGGAGAACTCCCTACCTCCGACGACGTCCCGC
CGGCGGAGTCACAACTCGCTCCCCCCCCTGTCGCCGAACCACGCGACCCT
CCTTCCGGCGGCCACGTCGAGAATAAAGGGTTCGCCCCACCGAATGTCCA
CTGTACAGCGACCACCCCTCCACCGTCCCCTACCCCGTCCGCGACTCCAG
CGCCATCCCCGTCCGTGACTTCATCCGCCACGCCGTCCGCTGGTGCTCCA
TCGATCGCGCCGTCCGCATCCACCAACATGTCCAGTACGAGAAGCCGGAT
CCAGCGGGTGGTCGACAACCATCCAGATCTCCTGGCTGAGGGGAGCATCT
CGGAACTACCCCCACACATCATGACCCTGATGCACCGGCTGTTTGACACC
GCGCGGCAGAACCAGGGCCGCACCCAGTTACTCAGGTCGGCACCCTCGTC
AGGTGGTGATCCGTCCACCACTCCCAGGAGCACGCCACGCAACGACAACA
ACCGCGGCGGTGGCAACTCCTCCCGCTCCGCCCCGAGGGAGCGCTCGCGG
TGCTCGCACCCGTCGTGCAAGAAACCCCTCGGGCACACGACGGACACGTG
TTTCCAACGGAAGCGCGAAAAAGTCCAGGCGACCAAGAACCACCGCGAGA
ACACTCGCCCGGTGGCGAAAAGGTCGTGTGCAGAGGATCGAATTCCTCGC
AAAGACCAGAACAACGACGATAGCGACGCG back to top
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