mRNA_Ecto-sp13_S_contig9845.21488.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9845.21488.1
Unique NamemRNA_Ecto-sp13_S_contig9845.21488.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9845.21488.1 vs. uniprot
Match: B5LWN3_9PHYC (Putative ubiquitin-like putative cysteine protease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWN3_9PHYC)

HSP 1 Score: 129 bits (325), Expect = 1.040e-32
Identity = 65/193 (33.68%), Postives = 100/193 (51.81%), Query Frame = 2
Query:  113 LKGFKPAIWFNDTVVNVYFGMLRSNENPSSASCIFMPTYLYTKFAGPLPRNASRDPDDEAKERYKLVRGWTRGVDTLGKEKIFIPVNLGNKHWILVYIDMRRKRVLSLDGFRRPRYVVRTNVLDWLGEEHRAKRVPFDRREWASMEKKAPTQTDGNSCGPFVCLFAAFLSNNRPLSFKQGHVPAMRERIVWSI 691
            +  F P  W+ND +++ Y  +L  + NP+S    +   +  T F   L    S             + G+TRG+    K++IFIPVN+ N HWILV +D   KR+   +       VV  N+ +W  + +++        +W + +K +P Q +G+ CG FVC+ AA LSN R LS+ Q H+ A R+RI WSI
Sbjct:  130 INRFHPGRWYNDNIIDSYMALLGGSSNPASRKKAY---FFNTMFYPLLTHGGS-------------ISGYTRGIPITRKDRIFIPVNVHNNHWILVVVDAESKRIQHYNSMASVSEVVLENIKNWASKTYKS-------GDWVAEDKTSPMQKNGSDCGVFVCVNAALLSNKRKLSYTQNHMSAYRQRIAWSI 299          
BLAST of mRNA_Ecto-sp13_S_contig9845.21488.1 vs. uniprot
Match: H3GKI7_PHYRM (ULP_PROTEASE domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GKI7_PHYRM)

HSP 1 Score: 116 bits (291), Expect = 1.170e-26
Identity = 68/202 (33.66%), Postives = 96/202 (47.52%), Query Frame = 2
Query:  113 LKGFKPAIWFNDTVVNVYFGMLRSNENPSSASCI------FMPTYLYTKFAGPLPRNASRDPDDEAKERYKLVRGWTRGVDTLGKEKIFIPVNLGNKHWILVYIDMRRKRVLSLDGFRRPRYVVRTNVLDWLGEE-HRAKRVPFDRREW--ASMEKKAPTQTDGNSCGPFVCLFAAFLSNNRPLSFKQGHVPAMRERIVWSI 691
            L+   PA W ND V+N YF M+   +    ++ +      F  ++ YTK +             E    +  VR WTR +D    +KIFIPVN+GN HW +  I M  KR+   D            +L +L +E    K+  FD   W   +     PTQ +G+ CG F C+FA +LS NRPLSF Q  +P  R R+V  +
Sbjct:  278 LQVMLPATWLNDEVINFYFQMMCDRDEALVSAGVLPKRSHFFNSFFYTKVS-------------ENGYNFINVRRWTRKIDLFALDKIFIPVNVGNMHWCMAVIFMTEKRIQYYDSMHGSGAACLKVLLRYLHDESEHKKKQKFDAEGWELVTTTTDTPTQNNGSDCGVFSCMFADYLSQNRPLSFTQKDIPFHRHRMVLHV 466          
BLAST of mRNA_Ecto-sp13_S_contig9845.21488.1 vs. uniprot
Match: A0A7K6RXR6_9GRUI (SENP2 protease (Fragment) n=1 Tax=Rhynochetos jubatus TaxID=54386 RepID=A0A7K6RXR6_9GRUI)

HSP 1 Score: 110 bits (276), Expect = 2.970e-26
Identity = 69/214 (32.24%), Postives = 108/214 (50.47%), Query Frame = 2
Query:   71 KILRAAFQPRSLIA-LKGFKPAIWFNDTVVNVYFGML--RSNENPSSASCIFMPTYLYTKFAGPLPRNASRDPDDEAKERYKLVRGWTRGVDTLGKEKIFIPVNLGNKHWILVYIDMRRKRVLSLDGFRRPRYVVRTNVLDWLGEEHRAKR-VPFDRREWASMEKKA---PTQTDGNSCGPFVCLFAAFLSNNRPLSFKQGHVPAMRERIVWSI 691
            +++ +AF+ +   A +   K   W ND V+N Y  +L  RS ++   A   F  T+ Y K                    YK VR WTRGVD    + IF+P++L + HW L+ ID+R+K +   D   +    +   VL +L EE + KR +     EW     +A   P Q +G+ CG FVC +A ++S  +P++F Q H+P  R+++VW I
Sbjct:   25 EVMSSAFKLKVTRADIHTLKICRWLNDEVINFYMSLLVERSRKDGYPAVHAFS-TFFYPKLIS---------------GGYKDVRRWTRGVDIFKMDLIFVPIHL-DAHWTLLVIDVRKKTIRYFDSMGQEGDNICQTVLQYLQEESQEKRKLELIASEWTLHSMQAHEIPQQMNGSDCGVFVCKYADYVSQEKPMTFTQSHMPYFRKKMVWEI 221          
BLAST of mRNA_Ecto-sp13_S_contig9845.21488.1 vs. uniprot
Match: A0A7K9EI37_BARMA (SENP2 protease (Fragment) n=1 Tax=Baryphthengus martii TaxID=176943 RepID=A0A7K9EI37_BARMA)

HSP 1 Score: 110 bits (275), Expect = 3.700e-26
Identity = 66/192 (34.38%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  137 WFNDTVVNVYFGMLRSNENPSSASCIF-MPTYLYTKFAGPLPRNASRDPDDEAKERYKLVRGWTRGVDTLGKEKIFIPVNLGNKHWILVYIDMRRKRVLSLDGFRRPR--YVVRTNVLDWLGEEHRAKR-VPFDRREWA--SMEK-KAPTQTDGNSCGPFVCLFAAFLSNNRPLSFKQGHVPAMRERIVWSI 691
            W ND +VN YF +L      SS   +    T+ YTK                    Y  V+ WTRGVD   K+ I +PV+L   HW L  IDMR+K++   D   R      V   +L++L EE   KR +P    +W   S+E  + P Q++   CG F+C +A ++S  +P++F Q H+P  R+RI W I
Sbjct:   41 WLNDEIVNFYFALLMERSKKSSYPTVHAFNTFFYTKLVS---------------GGYTSVKRWTRGVDIFKKDLILVPVHL-KVHWTLAVIDMRKKKISYYDSMGRSGKGMDVCETLLEYLQEESLQKRNLPLTLSKWTLRSVEPYEIPQQSNDRDCGVFMCKYADYISQEKPMNFTQTHMPYFRKRIAWEI 216          
BLAST of mRNA_Ecto-sp13_S_contig9845.21488.1 vs. uniprot
Match: A0A091K8G6_COLST (Sentrin-specific protease 2 (Fragment) n=2 Tax=Colius striatus TaxID=57412 RepID=A0A091K8G6_COLST)

HSP 1 Score: 112 bits (281), Expect = 2.090e-25
Identity = 67/213 (31.46%), Postives = 106/213 (49.77%), Query Frame = 2
Query:   71 KILRAAFQPRSLIA-LKGFKPAIWFNDTVVNVYFGMLRSNENPSSASCIF-MPTYLYTKFAGPLPRNASRDPDDEAKERYKLVRGWTRGVDTLGKEKIFIPVNLGNKHWILVYIDMRRKRVLSLDGFRRPRYVVRTNVLDWLGEEHRAKR-VPFDRREWA--SMEK-KAPTQTDGNSCGPFVCLFAAFLSNNRPLSFKQGHVPAMRERIVWSI 691
            +IL +AF+ +     ++  +   W ND V+N Y  +L +         I    T+ Y K                    YK V  WTR VD   ++ +F+P++L   HW LV +D+R+K +  LD   +  + +   V  +L  EH  KR +     EW+  SME  + P Q++G+ CG F+C +A FLS ++P++F Q H+P  R R+VW I
Sbjct:  240 EILSSAFKLKVTRGDIQTLRNLCWVNDEVINFYMNLLMARSKKEGYPAIHAFSTFFYPKLLS---------------GGYKAVMRWTRNVDLFKQDMVFVPIHL-KLHWALVVVDVRKKSIRYLDSLGQNGHKICETVFKYLQAEHLEKRKLELSCWEWSLCSMEPHEIPQQSNGSDCGIFLCKYADFLSQDKPMTFSQPHMPYFRRRMVWEI 436          
BLAST of mRNA_Ecto-sp13_S_contig9845.21488.1 vs. uniprot
Match: A0A5F8G528_MONDO (ULP_PROTEASE domain-containing protein n=1 Tax=Monodelphis domestica TaxID=13616 RepID=A0A5F8G528_MONDO)

HSP 1 Score: 108 bits (270), Expect = 2.940e-25
Identity = 59/189 (31.22%), Postives = 95/189 (50.26%), Query Frame = 2
Query:  137 WFNDTVVNVYFGMLRSNENPSSASCIFMPTYLYTKFAGPLPRNASRDPDDEAKERYKLVRGWTRGVDTLGKEKIFIPVNLGNKHWILVYIDMRRKRVLSLDGFRRPRYVVRTNVLDWLGEEHRAKR-VPFDRREWASMEK---KAPTQTDGNSCGPFVCLFAAFLSNNRPLSFKQGHVPAMRERIVWSI 691
            W ND ++N Y  +L           +    + ++ F  P  R A           Y+ VR WT+GVD   ++ + +P++    HW LV ID+R+K +  LD        + T +L +L EE +++R    D  EW   E    K P Q++   CG F+C +A ++S ++PL+F Q H+P  R+R+VW I
Sbjct:   59 WLNDGIINFYMNLLVDRNQKQGLPRL----HAFSTFFYPKLRAAG----------YQAVRRWTKGVDLFQQDLLLVPIHQ-RAHWSLVLIDLRKKSIQYLDSLGGKEPGICTMMLQYLKEESKSRRNAELDPTEWTLDEGRSWKIPQQSNSEDCGVFLCKYADYISQDKPLAFTQNHMPHFRKRMVWEI 232          
BLAST of mRNA_Ecto-sp13_S_contig9845.21488.1 vs. uniprot
Match: UPI000522C328 (sentrin-specific protease 2-like n=1 Tax=Leptosomus discolor TaxID=188344 RepID=UPI000522C328)

HSP 1 Score: 109 bits (272), Expect = 1.940e-24
Identity = 61/190 (32.11%), Postives = 93/190 (48.95%), Query Frame = 2
Query:  137 WFNDTVVNVYFGMLRSNENPSSASCIF-MPTYLYTKFAGPLPRNASRDPDDEAKERYKLVRGWTRGVDTLGKEKIFIPVNLGNKHWILVYIDMRRKRVLSLDGFRRPRYVVRTNVLDWLGEEHRAKR---VPFDRREWASMEK-KAPTQTDGNSCGPFVCLFAAFLSNNRPLSFKQGHVPAMRERIVWSI 691
            W ND V+N Y  +L      +    +    T+ Y K                    Y+ VR WTRGVD   ++ + +P++L + HW L  IDMR+K +  LD   +    +   +  +L EE R KR   +PF      SME  + P Q + + CG F+C +A ++S ++PL+F Q H+P  R R+VW I
Sbjct:  202 WLNDEVINFYMMLLIERSKKAGYPTLHAFSTFFYRKLVS---------------GGYQAVRRWTRGVDLFKQDLVLVPIHLTD-HWTLAAIDMRKKTIKYLDSLGQKGDKICATLFQYLQEESREKRKMELPFSEWTLRSMEPHEIPQQFNNSDCGMFLCKYADYISQDKPLAFTQSHMPYFRRRMVWEI 375          
BLAST of mRNA_Ecto-sp13_S_contig9845.21488.1 vs. uniprot
Match: A0A7K8T0K0_9AVES (SENP2 protease (Fragment) n=1 Tax=Nyctibius bracteatus TaxID=48426 RepID=A0A7K8T0K0_9AVES)

HSP 1 Score: 105 bits (263), Expect = 2.440e-24
Identity = 71/218 (32.57%), Postives = 103/218 (47.25%), Query Frame = 2
Query:   50 NPSRCVLKILRAAFQPRSLIALKGFKPAIWFNDTVVNVYFGMLRSNENPSSASCIFMPTYLYTKFAGPLPRNASRDPDDEAKERYKLVRGWTRGVDTLGKEKIFIPVNLGNKHWILVYIDMRRKRVLSLDGFRRPRYVVRTNVLDWLGEEHRAKR-VPFDRREWA--SMEK-KAPTQTDGNSCGPFVCLFAAFLSNNRPLSFKQGHVPAMRERIVWSI 691
            +PS  +    +      S+  L+ F+   W +D V+N Y  +L    N       +   ++++ F  P   +A           Y  VR WTRGVD    + I +PV++  +HW LV ID R K V S D            +  +L EE R KR V     EW   SME  + P Q + + CG FVC +A +LS ++PL+F Q H+P  R R+VW I
Sbjct:   22 SPSEVLSSAFKLEVTRESMCTLRNFQ---WLDDEVINFYMKLLMERSNKEG----YPKVHVFSTFFYPKLISAG----------YDAVRRWTRGVDLFSCDVILVPVHM-REHWTLVVIDTREKTVKSFDSLGISGDWSCEVLFLYLQEESRKKRNVELTVSEWTLHSMEPDEIPQQYNTSDCGVFVCKYADYLSQDKPLTFSQIHMPYFRRRMVWEI 221          
BLAST of mRNA_Ecto-sp13_S_contig9845.21488.1 vs. uniprot
Match: A0A7L2Z333_JACJC (SENP2 protease (Fragment) n=1 Tax=Jacana jacana TaxID=54508 RepID=A0A7L2Z333_JACJC)

HSP 1 Score: 104 bits (260), Expect = 5.740e-24
Identity = 62/199 (31.16%), Postives = 99/199 (49.75%), Query Frame = 2
Query:  113 LKGFKPAIWFNDTVVNVYFGM-LRSNENPSSASCIFMPTYLYTK-FAGPLPRNASRDPDDEAKERYKLVRGWTRGVDTLGKEKIFIPVNLGNKHWILVYIDMRRKRVLSLDGFRRPRYVVRTNVLDWLGEEHRAKR-VPFDRREWA--SMEK-KAPTQTDGNSCGPFVCLFAAFLSNNRPLSFKQGHVPAMRERIVWSI 691
            L+  +   W ND V+N Y  + +  N+     +     T+ + K ++G                 YK V  WT+ VD    + I +P++L   HW LV I++R K V   D   +    +   +L +L +E R KR V  +  EW   SME  + P Q +G+ CG F+C +A + + N+P++FKQ H+P  R+R+VW I
Sbjct:   33 LQTLRNLCWLNDEVINFYMNLVIERNKKEGYPAVHAFSTFFFPKLYSG----------------GYKAVARWTKNVDLFKYDIILVPIHL-RSHWALVVINIREKTVKYFDSMEQKGDYICKTLLKYLNDESRVKRNVVINILEWTVHSMESHEIPQQYNGSDCGVFMCQYANYAACNKPMNFKQAHMPYFRKRMVWEI 214          
BLAST of mRNA_Ecto-sp13_S_contig9845.21488.1 vs. uniprot
Match: A0A6A3TAC2_9STRA (ULP_PROTEASE domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TAC2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.070e-23
Identity = 63/202 (31.19%), Postives = 93/202 (46.04%), Query Frame = 2
Query:  113 LKGFKPAIWFNDTVVNVYFGMLRS------NENPSSASCIFMPTYLYTKFAGPLPRNASRDPDDEAKERYKLVRGWTRGVDTLGKEKIFIPVNLGNKHWILVYIDMRRKRVLSLDGFRRPRYVVRTNVLDWLGEE-HRAKRVPFDRREW--ASMEKKAPTQTDGNSCGPFVCLFAAFLSNNRPLSFKQGHVPAMRERIVWSI 691
            L+   P +W ND V+N Y+ M+        N    S    F  ++ +TK +             E    +  VR WTR +D    +KIF+PVN+GN HW +  I M  KR+   D            +L +L +E    K+  FD   W   +     P Q +G+ CG F C+FA +LS N+PL+FKQ  +   R R+V  +
Sbjct:  293 LQVLLPGVWLNDEVINFYYQMMSDRDEALVNAGVLSKRSHFFNSFFFTKVS-------------ENGYNFINVRRWTRKIDLFAMDKIFLPVNVGNMHWCMAVIFMTEKRIQYYDSMLGSGAACLKILLRYLHDESEHKKKQKFDEEGWELVTCTPDTPQQNNGSDCGVFSCMFADYLSQNKPLTFKQKDISFHRHRMVLHV 481          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9845.21488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5LWN3_9PHYC1.040e-3233.68Putative ubiquitin-like putative cysteine protease... [more]
H3GKI7_PHYRM1.170e-2633.66ULP_PROTEASE domain-containing protein n=1 Tax=Phy... [more]
A0A7K6RXR6_9GRUI2.970e-2632.24SENP2 protease (Fragment) n=1 Tax=Rhynochetos juba... [more]
A0A7K9EI37_BARMA3.700e-2634.38SENP2 protease (Fragment) n=1 Tax=Baryphthengus ma... [more]
A0A091K8G6_COLST2.090e-2531.46Sentrin-specific protease 2 (Fragment) n=2 Tax=Col... [more]
A0A5F8G528_MONDO2.940e-2531.22ULP_PROTEASE domain-containing protein n=1 Tax=Mon... [more]
UPI000522C3281.940e-2432.11sentrin-specific protease 2-like n=1 Tax=Leptosomu... [more]
A0A7K8T0K0_9AVES2.440e-2432.57SENP2 protease (Fragment) n=1 Tax=Nyctibius bracte... [more]
A0A7L2Z333_JACJC5.740e-2431.16SENP2 protease (Fragment) n=1 Tax=Jacana jacana Ta... [more]
A0A6A3TAC2_9STRA1.070e-2331.19ULP_PROTEASE domain-containing protein n=9 Tax=Phy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9845contigEcto-sp13_S_contig9845:1017..1719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start1
Seed ortholog score104.4
Seed ortholog evalue5.7e-20
Seed eggNOG ortholog13735.ENSPSIP00000020482
Preferred nameSENP2
Model size703
KEGG koko:K03345
KEGG Pathwayko03013,ko04310,map03013,map04310
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001701,GO:0001890,GO:0001892,GO:0001932,GO:0001934,GO:0003002,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006807,GO:0007275,GO:0007346,GO:0007389,GO:0007507,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009790,GO:0009792,GO:0009798,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009950,GO:0009953,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010648,GO:0012505,GO:0016604,GO:0016787,GO:0016925,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019783,GO:0019904,GO:0022414,GO:0023051,GO:0023057,GO:0030111,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031396,GO:0031397,GO:0031398,GO:0031399,GO:0031400,GO:0031401,GO:0031410,GO:0031647,GO:0031648,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032091,GO:0032268,GO:0032269,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032875,GO:0032991,GO:0035561,GO:0035562,GO:0036211,GO:0042325,GO:0042327,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043412,GO:0043516,GO:0043518,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045444,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051052,GO:0051098,GO:0051100,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051726,GO:0060255,GO:0060706,GO:0060707,GO:0060711,GO:0060712,GO:0061458,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070122,GO:0070137,GO:0070138,GO:0070139,GO:0070140,GO:0070646,GO:0070647,GO:0071704,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0090329,GO:0097708,GO:0140096,GO:1901564,GO:1901796,GO:1901797,GO:1901987,GO:1901990,GO:1902531,GO:1902532,GO:1902680,GO:1902806,GO:1903320,GO:1903321,GO:1903322,GO:1903506,GO:1903508,GO:2000045,GO:2000112,GO:2001020,GO:2001021,GO:2001141
Exons1
EggNOG free text desc.SUMO1 sentrin SMT3 specific peptidase 2
EggNOG OGs39WIM@33154,3BJF9@33208,3D329@33213,489ZC@7711,48VBD@7742,4CH21@8459,COG5160@1,KOG0778@2759
EC3.4.22.68
Cds size531
COG Functional cat.O
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03019,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464247.1032753-UTR-Ecto-sp13_S_contig9845:1016..11881681464247.1032753-UTR-Ecto-sp13_S_contig9845:1016..1188Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9845 1017..1188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464247.120794-CDS-Ecto-sp13_S_contig9845:1188..17191681464247.120794-CDS-Ecto-sp13_S_contig9845:1188..1719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9845 1189..1719 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9845.21488.1prot_Ecto-sp13_S_contig9845.21488.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9845 1189..1719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9845.21488.1

>prot_Ecto-sp13_S_contig9845.21488.1 ID=prot_Ecto-sp13_S_contig9845.21488.1|Name=mRNA_Ecto-sp13_S_contig9845.21488.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=177bp
MLRSNENPSSASCIFMPTYLYTKFAGPLPRNASRDPDDEAKERYKLVRGW
TRGVDTLGKEKIFIPVNLGNKHWILVYIDMRRKRVLSLDGFRRPRYVVRT
NVLDWLGEEHRAKRVPFDRREWASMEKKAPTQTDGNSCGPFVCLFAAFLS
NNRPLSFKQGHVPAMRERIVWSIFKW*
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mRNA from alignment at Ecto-sp13_S_contig9845:1017..1719+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9845.21488.1 ID=mRNA_Ecto-sp13_S_contig9845.21488.1|Name=mRNA_Ecto-sp13_S_contig9845.21488.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=703bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9845:1017..1719+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGCCCCACCCATCTGGTCTCTGAATGCTTTCATCCGCAACGTGAAAAA ACCCCTCACGTTGCGTGTTGAAGATCTTAAGGGCGGCATTTCAACCGAGA AGTTTGATAGCTTTGAAAGGTTTTAAACCCGCTATTTGGTTCAATGATAC AGTTGTGAATGTTTATTTTGGGATGCTGAGAAGCAACGAGAATCCTTCGA GCGCGTCCTGTATTTTCATGCCGACTTATTTGTACACCAAATTCGCGGGT CCGTTGCCGAGAAATGCAAGCCGTGACCCCGATGACGAGGCAAAAGAGCG TTATAAGCTCGTTAGGGGATGGACGCGGGGGGTAGACACGCTCGGCAAAG AAAAGATTTTCATCCCCGTCAACCTCGGCAACAAGCATTGGATCCTGGTG TACATCGATATGCGTAGAAAACGTGTCCTTTCGCTTGACGGTTTCCGCCG GCCGAGATATGTGGTAAGAACAAACGTTTTGGATTGGCTGGGAGAAGAGC ACAGAGCGAAGCGTGTCCCTTTTGATCGCCGCGAGTGGGCGTCGATGGAG AAAAAAGCTCCCACACAGACCGACGGAAATAGCTGTGGTCCGTTCGTCTG TTTGTTCGCTGCGTTTTTGTCGAACAATCGGCCGCTGTCCTTCAAACAGG GCCATGTACCCGCCATGCGGGAGCGAATTGTGTGGTCCATTTTTAAATGG TAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9845:1017..1719+

>mRNA_Ecto-sp13_S_contig9845.21488.1 ID=mRNA_Ecto-sp13_S_contig9845.21488.1|Name=mRNA_Ecto-sp13_S_contig9845.21488.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9845:1017..1719+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGAGAAGCAACGAGAATCCTTCGAGCGCGTCCTGTATTTTCATGCC
GACTTATTTGTACACCAAATTCGCGGGTCCGTTGCCGAGAAATGCAAGCC
GTGACCCCGATGACGAGGCAAAAGAGCGTTATAAGCTCGTTAGGGGATGG
ACGCGGGGGGTAGACACGCTCGGCAAAGAAAAGATTTTCATCCCCGTCAA
CCTCGGCAACAAGCATTGGATCCTGGTGTACATCGATATGCGTAGAAAAC
GTGTCCTTTCGCTTGACGGTTTCCGCCGGCCGAGATATGTGGTAAGAACA
AACGTTTTGGATTGGCTGGGAGAAGAGCACAGAGCGAAGCGTGTCCCTTT
TGATCGCCGCGAGTGGGCGTCGATGGAGAAAAAAGCTCCCACACAGACCG
ACGGAAATAGCTGTGGTCCGTTCGTCTGTTTGTTCGCTGCGTTTTTGTCG
AACAATCGGCCGCTGTCCTTCAAACAGGGCCATGTACCCGCCATGCGGGA
GCGAATTGTGTGGTCCATTTTTAAATGGTAG
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