mRNA_Ecto-sp13_S_contig9840.21487.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A6H5LBS4_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBS4_9PHAE) HSP 1 Score: 595 bits (1533), Expect = 1.870e-206 Identity = 307/341 (90.03%), Postives = 317/341 (92.96%), Query Frame = 3 Query: 222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSRSTYADQIKELHKLKAKTADDVAAESPVIAXXXXXXSDDLDPGTTGSESPSGKISSTKREAEVIAQVSGEKRGRIGAISETTAMTAPSSPRLRSVGGAPAEGGGDPTPSPANARGASEVEGDXXXXXXXESREDDLGREDDILSFVAVAIALAIVGILVRKALRLAEVI 1244 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEF+GGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPE+WQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCG+VADLLPELRPKGES GASSRS YADQIKELHKLKAKTAD+VAAESPV A XXXXSDD DPGTTGSESPSGKI STK+EAEVIAQ SG+K G IGAIS+TTA TAPSSPRLRSVGG PAEG G PTP+ ANARG SEVEGD ESRE+ LGREDD+LSFVAVAIALAIVGILVRKALRLAEVI Sbjct: 1 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFQGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEYWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGVVADLLPELRPKGESGGASSRSIYADQIKELHKLKAKTADEVAAESPVTAAAXXXXSDDRDPGTTGSESPSGKIGSTKKEAEVIAQASGKKCGGIGAISKTTATTAPSSPRLRSVGGGPAEGRGGPTPAHANARGTSEVEGDGGQQQKQESREEYLGREDDVLSFVAVAIALAIVGILVRKALRLAEVI 341
BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: I2CR53_NANGC (Ubiquitin-conjugating enzyme E2 J1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CR53_NANGC) HSP 1 Score: 271 bits (693), Expect = 1.590e-80 Identity = 124/198 (62.63%), Postives = 149/198 (75.25%), Query Frame = 3 Query: 231 NIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPK-GESSGASS----------------RSTYADQIKELH 773 N+KNPAI+RIHAD+REL KDPSDQYHAAPLE NLFEWHFT+RGPP T+++ GVYHGRI+LP EYPF+PP+IM TP+GRF G KICL+IS++HPEHWQPAWG+RLILEALISFFP+ GA+G LDW+ ERKRLAVESR W C +CGL+ LLP L GE SG + TYA+ + +L+ Sbjct: 9 NVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDAGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWGVRLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESRSWCCARCGLIKTLLPPLNTAVGEESGKEGXXXXXXXXXXXENNGGKRTYAEAVSQLY 206
BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A8K1CP11_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP11_PYTOL) HSP 1 Score: 264 bits (674), Expect = 2.290e-78 Identity = 127/203 (62.56%), Postives = 157/203 (77.34%), Query Frame = 3 Query: 222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSRSTYADQIKELH--KLKAK---TADDVAAES 815 M +++N AIKRI DVRE+MKDPSDQY+AAPLE N+F+WHFT+RGPPDTEFEGG+YHGRI+LP +YPF+PP+IM TPNGRF KICL+IS++HPE WQPAWGIRLILEALISF P+ GA+G +D+ ERKRLA S + C CG VA+LLPEL+ + E + AS S YADQI +LH L++K +A+D A ES Sbjct: 1 MASSVRNTAIKRIQGDVREMMKDPSDQYYAAPLEDNMFDWHFTLRGPPDTEFEGGIYHGRILLPADYPFKPPNIMLLTPNGRFEVRKKICLSISAHHPEEWQPAWGIRLILEALISFMPTKGEGAIGAIDYPPEERKRLAKLSCDYTCDVCGKVAELLPELKEEDEEN-ASKPSKYADQIAQLHMHSLESKPATSAEDTAQES 202
BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: V9E9I6_PHYPR (UBC core domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=V9E9I6_PHYPR) HSP 1 Score: 259 bits (663), Expect = 1.300e-76 Identity = 119/191 (62.30%), Postives = 145/191 (75.92%), Query Frame = 3 Query: 222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSRSTYADQIKELHKLKAKTA 794 M +++N AIKRI DVRE+M +PSDQY AAPLE+N+F+WHFT+RGP DTEFEGG+YHGRIILP +YPF+PP+IM TPNGRF KICL+IS+YHPE WQPAWG+RLILEALISF P+ GA+G LD+ A ER+RLA S +KC CG VADLLPEL + E S YA+QI +LH ++A Sbjct: 1 MAASVRNTAIKRIQGDVREMMTNPSDQYAAAPLETNMFDWHFTLRGPRDTEFEGGIYHGRIILPSDYPFKPPNIMLLTPNGRFEVKKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFPAEERRRLAKLSVDYKCETCGRVADLLPELESENEEETEKKPSKYAEQIAQLHMHSLESA 191
BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A484EG94_BRELC (UBC core domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EG94_BRELC) HSP 1 Score: 260 bits (664), Expect = 2.140e-76 Identity = 119/185 (64.32%), Postives = 144/185 (77.84%), Query Frame = 3 Query: 222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSR-STYADQIKELH 773 M ++N AIKRI DVRE+M +PSDQY AAPLE+N+F+WHFT+RGPPD+EFEGG+YHGRIILP +YPF+PP+IM TPNGRF KICL+IS+YHPE WQPAWG+RLILEALISF P+ GA+G LD+SA ER+RLA S +KC CG VADLLPEL+ E + S YA+QI +LH Sbjct: 1 MVAGVRNTAIKRIQGDVREMMTNPSDQYDAAPLETNMFDWHFTLRGPPDSEFEGGIYHGRIILPSDYPFKPPNIMLLTPNGRFEVKKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFSAAERRRLAKLSVDFKCETCGRVADLLPELKAGNEEKEVEKKPSKYAEQIAQLH 185
BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A6G0XT22_9STRA (UBC core domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XT22_9STRA) HSP 1 Score: 257 bits (657), Expect = 6.050e-76 Identity = 123/198 (62.12%), Postives = 145/198 (73.23%), Query Frame = 3 Query: 222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSRSTYADQIKELHKLKAKTADDVAAES 815 M +I N AIKRI ADVRE+M DPSDQY A PLE N+F+WHFTIRGP DT FEGGVYHGRI+LP +YPF+PP+I+ TPNGRF KICL+IS+YHPEHWQPAWG+RLILEALISF P+ GA+G LD++A ERK LA ES W C +CG V DL+PE +P+ A S YA QI +LH + A D A S Sbjct: 1 MSGSIGNTAIKRIRADVREMMTDPSDQYFATPLEDNMFDWHFTIRGPRDTPFEGGVYHGRILLPADYPFKPPNIILLTPNGRFEVKKKICLSISAYHPEHWQPAWGVRLILEALISFMPTKGEGAIGALDFTADERKALAKESVNWSCPQCGSVKDLIPEEKPRDT---APVESKYASQIAQLHIHNMEAAPDNADSS 195
BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A0P1B4T1_PLAHL (Ubiquitin-conjugating enzyme n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B4T1_PLAHL) HSP 1 Score: 258 bits (659), Expect = 6.560e-76 Identity = 122/197 (61.93%), Postives = 147/197 (74.62%), Query Frame = 3 Query: 222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSR-STYADQIKELHKLKAKTADDVAA 809 M ++N AIKRI DVRE+M +PSDQY AAPL++N+F+WHFT+RGP DTEFEGGVYHGRIILP +YPF+PP+IM TPNGRF KICL+IS+YHPE WQPAWG+RLILEALISF P+ GA+G LD+SA ERKRLA S + C CG V DLLPELR A+ + S YA+QI +LH ++A V A Sbjct: 1 MSAGVRNTAIKRIQGDVREMMTNPSDQYAAAPLDTNMFDWHFTLRGPRDTEFEGGVYHGRIILPSDYPFKPPNIMLLTPNGRFEVRKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFSAAERKRLAKLSIDYTCETCGRVLDLLPELRATNADEDAAKKPSKYAEQIAQLHMHSLESAPPVTA 197
BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A329S705_9STRA (UBC core domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S705_9STRA) HSP 1 Score: 258 bits (659), Expect = 6.980e-76 Identity = 149/348 (42.82%), Postives = 205/348 (58.91%), Query Frame = 3 Query: 222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSR-STYADQIKELHKLKAKTADDVAA--ESPVIAXXXXXXSDDLDPGTTGSESPSGKISSTKREAEVIAQVSGEKRGRIGAISETTAMTAPSSPRLRSVGGA----PAEGGGDPTPSPANARGASEVEGDXXXXXXXESREDDLGREDDILSFVAVAIALAIVGILVRKALRLAEVI 1244 M +++N AIKRI DVRE+M +PSDQY AAPLE+N+F+WHFT+RGP DTEFE G+YHGRIILP +YPF+PP+IM TPNGRF KICL+IS+YHPE WQPAWG+RLILEALISF P+ GA+G LD+ A ER+RLA S +KC CG VADLLPEL + E + S YA+QI +LH +TA A E+ ++ S+ G+++ + E V ++ + K +SE+TA T +S+G A PAE +P V+ + RE D D L ++ +AI +A+ ++ +K L++ ++ Sbjct: 1 MAASVRNTAIKRIQGDVREMMTNPSDQYAAAPLETNMFDWHFTLRGPRDTEFEDGIYHGRIILPSDYPFKPPNIMLLTPNGRFEVKKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFPAEERRRLAKLSVDYKCETCGRVADLLPELESENEEKEVEKKPSKYAEQIAQLHMHSLETAPPANANKETETVSAEVSENSEQEASAAAGAQT-------AQEEDSVESKPAKTKEAATTEVSESTAST-------QSIGAATIVAPAEEPAAAEAAPGVIDHHQNVDTPIAAHNVAQVRESD--SVDTFLHYLTIAIVVALFALIYKKLLQMHGIL 332
BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A1V9YYG8_9STRA (Ubiquitin-conjugating enzyme E2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYG8_9STRA) HSP 1 Score: 256 bits (654), Expect = 9.640e-76 Identity = 118/184 (64.13%), Postives = 143/184 (77.72%), Query Frame = 3 Query: 222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSRSTYADQIKELH 773 M +I N AIKRI ADVRE+M DPSDQY+AAPLESN+F+WHFTIRGP DTEFEGG++HGRI+LP EYPF+PP+I+ TPNGRF KICL+IS+YHPEHWQPAWG+RLILEALISF P+ GA+G LD++A ERK+LA ES W C +CG + DL+PE + + S YA QI +LH Sbjct: 1 MASSIGNTAIKRIRADVREMMTDPSDQYYAAPLESNMFDWHFTIRGPRDTEFEGGIFHGRILLPSEYPFKPPNIILLTPNGRFEVKKKICLSISAYHPEHWQPAWGVRLILEALISFMPTKGEGAIGALDFTAEERKKLAKESVVWSCPQCGSIKDLIPEETKRDKPV----ESKYASQIAQLH 180
BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A833S8V9_PHYIN (Ubiquitin-conjugating enzyme n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833S8V9_PHYIN) HSP 1 Score: 258 bits (658), Expect = 9.760e-76 Identity = 120/192 (62.50%), Postives = 147/192 (76.56%), Query Frame = 3 Query: 222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSR-STYADQIKELHKLKAKTA 794 M +++N AIKRI DVRE+M +PSDQY AAPLE+N+F+WHFT+RGP DTEFEGG+YHGRIILP +YPF+PP+IM TPNGRF KICL+IS+YHPE WQPAWG+RLILEALISF P+ GA+G LD+ A ER+RLA S +KC CG VADLLPEL + E + + S YA+QI +LH +TA Sbjct: 11 MAASVRNTAIKRIQGDVREMMTNPSDQYAAAPLETNMFDWHFTLRGPRDTEFEGGIYHGRIILPSDYPFKPPNIMLLTPNGRFEVKKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFPAEERRRLAKLSVDYKCETCGRVADLLPELESEHEGNEEEKKPSKYAEQIAQLHMHSLETA 202 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9840.21487.1 >prot_Ecto-sp13_S_contig9840.21487.1 ID=prot_Ecto-sp13_S_contig9840.21487.1|Name=mRNA_Ecto-sp13_S_contig9840.21487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=342bp MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTback to top mRNA from alignment at Ecto-sp13_S_contig9840:593..4083+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9840.21487.1 ID=mRNA_Ecto-sp13_S_contig9840.21487.1|Name=mRNA_Ecto-sp13_S_contig9840.21487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3491bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9840:593..4083+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9840:593..4083+ >mRNA_Ecto-sp13_S_contig9840.21487.1 ID=mRNA_Ecto-sp13_S_contig9840.21487.1|Name=mRNA_Ecto-sp13_S_contig9840.21487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9840:593..4083+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |