Homology
BLAST of mRNA_Ecto-sp13_S_contig9838.21484.1 vs. uniprot
Match:
A0A6H5L5V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V2_9PHAE)
HSP 1 Score: 387 bits (995), Expect = 7.020e-134
Identity = 208/215 (96.74%), Postives = 211/215 (98.14%), Query Frame = 1
Query: 100 MSDTDDDFDMPDSTLFSRPGSKDKDKAYAAQNKKKKSTPSFMSGLDALVAESTLDAERSEKISEIMNLGEDILEKDLLKTEQQKARTDATEAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQPAGELSVLAEAVKLAESDPADLEELLRSGLVPWLRKQLRGKGKTVPPEVFRWLLRLVARHEACAVVAAAEETLLRLLAEDDM 744
MSDTDDDFDMPDSTLFSRPGSKDKDKA AAQNKKK STPSFMSGLDALVAESTL+AERSEKISEIMNLGEDILEKDLLKTEQQKARTDA EAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQPAGELSVLAEAVKLAESDPADLEELLRSGLVPWLRK+L+GKGKTVPPEVFRWLLRLV RHEACAVVAAAEETLLRLLAEDDM
Sbjct: 1 MSDTDDDFDMPDSTLFSRPGSKDKDKASAAQNKKK-STPSFMSGLDALVAESTLNAERSEKISEIMNLGEDILEKDLLKTEQQKARTDAFEAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQPAGELSVLAEAVKLAESDPADLEELLRSGLVPWLRKKLKGKGKTVPPEVFRWLLRLVTRHEACAVVAAAEETLLRLLAEDDM 214
BLAST of mRNA_Ecto-sp13_S_contig9838.21484.1 vs. uniprot
Match:
D7FJ25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ25_ECTSI)
HSP 1 Score: 252 bits (644), Expect = 1.630e-82
Identity = 139/148 (93.92%), Postives = 141/148 (95.27%), Query Frame = 1
Query: 100 MSDTDDDFDMPDSTLFSRPGSKDKDKAYAAQNKKKKSTPSFMSGLDALVAESTLDAERSEKISEIMNLGEDILEKDLLKTEQQKARTDATEAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQPAGELSVLAEAVKLA 543
MSDTDDDFDMPDSTLFSRPGSK KDKA + QNKKK STPSFMSGLDALVAESTL+AERSEKISEIMNL EDILEKDLLKTEQQKARTDA EAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQP GELSVLAEAVKLA
Sbjct: 1 MSDTDDDFDMPDSTLFSRPGSKGKDKASSTQNKKK-STPSFMSGLDALVAESTLNAERSEKISEIMNLAEDILEKDLLKTEQQKARTDAAEAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQPEGELSVLAEAVKLA 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9838.21484.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 7.02e-134 / Id = 96.74 Expect = 1.63e-82 / Id = 93.92 Sequence A0A6H5L5V2_9PHAE D7FJ25_ECTSI
Match Name E-value Identity Description
A0A6H5L5V2_9PHAE 7.020e-134 96.74 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7FJ25_ECTSI 1.630e-82 93.92 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 0 Model size 755 Hectar predicted targeting category other localisation Exons 6 Cds size 753
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681464246.6649356-CDS-Ecto-sp13_S_contig9838:655..792 1681464246.6649356-CDS-Ecto-sp13_S_contig9838:655..792 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig9838 656..792 + 1681464246.67973-CDS-Ecto-sp13_S_contig9838:1698..1819 1681464246.67973-CDS-Ecto-sp13_S_contig9838:1698..1819 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig9838 1699..1819 + 1681464246.6910534-CDS-Ecto-sp13_S_contig9838:2620..2719 1681464246.6910534-CDS-Ecto-sp13_S_contig9838:2620..2719 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig9838 2621..2719 + 1681464246.7050724-CDS-Ecto-sp13_S_contig9838:3784..3886 1681464246.7050724-CDS-Ecto-sp13_S_contig9838:3784..3886 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig9838 3785..3886 + 1681464246.719315-CDS-Ecto-sp13_S_contig9838:4804..4889 1681464246.719315-CDS-Ecto-sp13_S_contig9838:4804..4889 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig9838 4805..4889 + 1681464246.7295215-CDS-Ecto-sp13_S_contig9838:5826..6035 1681464246.7295215-CDS-Ecto-sp13_S_contig9838:5826..6035 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig9838 5827..6035 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9838.21484.1
>prot_Ecto-sp13_S_contig9838.21484.1 ID=prot_Ecto-sp13_S_contig9838.21484.1|Name=mRNA_Ecto-sp13_S_contig9838.21484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=251bp
PTGWPLNSAPEASSTEQHQVSSLCFVCRKHREIMSDTDDDFDMPDSTLFS back to top mRNA from alignment at Ecto-sp13_S_contig9838:656..6035+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9838.21484.1 ID=mRNA_Ecto-sp13_S_contig9838.21484.1|Name=mRNA_Ecto-sp13_S_contig9838.21484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5380bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9838:656..6035+ (Ectocarpus species13 EcNAP12_S_4_19m)CCAACTGGATGGCCTTTGAACAGCGCGCCCGAGGCCAGCAGCACAGAGCA
GCACCAGGTGTCATCCCTCTGCTTTGTTTGTAGAAAGCACCGGGAAATCA
TGTCAGACACCGACGATGACTTCGATATGCCGGACAG GTGAGCGACGAAG
TGCTTTACTGGCTGCGACTACTGGATTGTAGCAATGCACCCTCAAAAGAG
CCATCCCGATTTTGAATTTCAAACATGTCAGCCAACTCTTTCTGGTATAA
TTAATTGTGCACACTGATACTGATTGCCCTTGCCAAACCCTTGTACACGA
CGTAAGGTTGCAAAGTTGGGCCTGGCTGCCTGGGGCATGCCTGGGGTGGT
AGATTAGGACCGATAAAGACGAAGTCTTGCCTATTGTCGCCCCTCCCCCT
CCCCCCCCTTCCTGCTTTTGGGCTTCGAAAAGTGCGCAACCAGCTTCTCA
AGTCTGGACTTTACTTTTACACATACACTACGGTAGTCTACAAAACATTG
AGGATGGCCCTTCTCTCGTTTCCCCGCCTCAAAACCTAACTCATGTGAAT
CCTTGCCCCATGGCCATGCACCAGCCGTTACATCGCACATTGAGAGAGGA
GACAGAGAGAGGAAGAAAGTGAGGGGGATTTCCATGTGAAAAATTTCTGA
ACTCTCTGGGCTGGTTGTCCCACTCTCTCCTGAACCACAAGAGACGGTTT
TCTCCTCCTGTTCGGTACGCCGCACACGACAGATACTCGCTACATGTAGA
CCTATCTTGAACCTTACCTCATGAATGGAAACATGCACGAAGACAGACAT
CGAAATTCCTTGTGCAGCACACGCTTGCCCCAAGACCGCACTGGATACAC
TGCAGGCGAGAGCGTGCGTTCGTGAGCCGAAGGCCCTGTGGAAGTTCCCA
CGTCACGCTTCGCTCGGGGTTCCCCGTACATGGAAGGCGGTGTCTGATGC
ACCTCGATCGAAAGCGTTTGTTTTCCCTCCCCCGTGCCCCCCTTAGTTAA
CACGTCACGGATGTCCGCTTTTACCCCGAAACCGCACGTTCAGCACGCTG
TTCAGCCGGCCTGGTAGCAAAGACAAGGACAAGGCTTATGCAGCGCAGAA
CAAGAAGAAGAAATCGACACCTTCGTTCATGAGCGGCTTGGATGCGCTCG
TCGCAGAGTCCACC GTAAGTTACAGTAATTTCTTGGCTCTTGGCCCTTTA
CGTCCATCACCCTTCACTAGCGTGCCGTCGATATTCGGCCTTCTATCAGA
CCTCGTGCCCCCCCCACACCCCTACGCCGCCCTACGGAGGTCCGAGGTTC
TATCCGCAGTACTCGATTTGTCCTTGTTCGTATGCTACAGTTGCCTTCGA
TTCCGACATGTGATATTCGTTCCTGCCTTTTAAAAAATTCTAGGCCTCCC
TCTCTACTGTAGTAGGTTCGATAAGTGTGTCCGCCACAGACGGTAGAACT
GGACCGAGTGGCGATGGGCACAGAATCCCGGAGATCCCCCACACCTTCAC
TACTTGACGCCAGGGAAAGTAGTTGGAGTATGCGTGCTCCGTTTCTTTAG
GTTCGTGGCGTTTTGTCTTCGTTGTAAGGCCTTTCTCGTACGAGTTTTGG
CCGGAGCTACATACCCGCAACACCAGCGAAGTATGCGAGGCACCCATTGG
CACTACTCACTCCACTATTTTGGTTTGTATCTTCAGAAGATAGACCATCT
TCAAAAATGAAGTGTGGTGTTCACAAAGACGAGCTAACTTTGAGGTACTA
AGACCATCAAGTGATACAACTGAAACCGCGTGGAAGATGAAGCGATCTAT
AACCACGTTAGAGGTGAAGATGTTACCAAGAGATATGGGGCACCAAGCGC
ATTGTGCTTAGGTACAGCAAAGCTTTCTTTCATGACGTACCGCTTCTCTG
AACACGATGTGATTTTTTGGCGCTTGCGCCGTGAACCTTGTTTGATTAAA
TTCTCGACATGGCAGCTCGACGCTGAGAGGTCCGAGAAGATCAGCGAGAT
CATGAACCTGGGAGAAGACATTCTCGAAAAGGACTTGCTGAAGACGGAAC
AGCAGAAAGCAAGG GTGAGGTTGTCGTCCAACGTACGAGTCCGTAAATTG
TGGAAGTACGTTTTGGGGTCGTGTTGGTCGAGAGGTAGGGACGGGTTTCG
GGACGATTTGCTCAGCTCCGGTGACGCTGCTGCTACTCTGAGTATATATA
TTGCTGTGTTGTAGAAACATACCCGGGGTGTGAGGGGGTTCGCTGGATGG
AAACGTAGACGTGCACAAGTACTACAAGGTAACGTCGCGTGGCCTCTCCT
TGCATCGCCTCGTTGGTTTGGTGTGTGTTGTGCCGCTGTCGGGGAACTAT
CGAATGCTGTGCGTCGCAGGGGTGATGTGGTGATGCCCCCCTCTCTTTGG
TGCTTGGCTGTCGTTCGTTGTGTGACATGCACACGCGGCTGGTTGCCGTT
TTGGGCCTGCAGCCTGCACGGCAGAGAGCGCGACAGCCGCTTGAAACGCC
CGAACACACCCGAGAATTATGAGGGGTCCCCCCCCTCCCCTCCTTGATCT
CAGGTAGATATGGCTTGAGAGCACGTTTCCGCGCGGCGCCCGGTCGCACA
GCACTACACAGCAGTCACGCGTGCACACATTGGAGGACAGCCAATCCACT
TGCACTAGAAAAGGCTCACGACAGTAGTTTCCCCCGTGACGTGAACAAAA
GGTCGAACGCCTGGGATACGGGAACGAAAGAGGCTGACGAACAACGCCGC
TCGCCATATGGAGTTCATACCGTTCGAACCGCTTTTCGATCGGTCTGATT
CCCCGCGGGAAGCAGCCTTCCTTCACCCTTGTGCATTCTGCATACCTTTC
CAGTCTTTTTTTTCTTCTTTTTTCTGGACGCCCATCTTGTCCTGCTCGGC
ACCCCAGCCTAGCGTGCAGTCCCTCCCCTTCAGCCACTCCTGGCTGAGGA
GGACGGTGTTGCACTAGATGGCAGCTCCCTGAGGCCCTCCATGCCTATCC
TCCTCTGGCAAGCGCCTCCAAGTGCACCTGGAGGGGAAGGGATAAGCGGT
CCCCTAAGGGCATTCTCACCAACGGTTTTTTTATTGTCGTACTTTCTCTT
GCACTCATCATGCGCTGTGCTTTCAACAGACGGACGCGACCGAGGCCAAG
GACAAGGCGGACCACAAGGCCATCATGGAGGACACGTCCATCAGAATCCC
GGGGGTCATCCGAGTTTTCCGACAGCCCGAG GTGTGTCAAGGCTGACGAC
TCGGGGGAGCTTTCGCGGGGGGCGTGACCGATATATTCCTGCTTGCCCTA
TGTACGCATGTATTGTGCAGGAGCCAACGCCATGTCACGTGGGTGATCCC
CTACAAGTGCTGCGAATTGTACCCCACCAACGGTAGGCCCAATCGACTCG
CAGACACATGTACCCGACCACAATTTGTGCTGACTGCTGTTGGTGTCGTT
CGCCACCGGTAAATGATGTTGAACCCACTTCAAACCACGGTTCGACCGTA
CGAGAAACATGCCGGAGAGTCCCAAACCATTTGTTATTTTTATCCTGTGC
GCGAGAGCGACTGCCGCACTGAGTACGCCTAAGCGAACCACAAGAACTGT
GTGTGCGTTTGTTCACGAAGGGCGTGCAAGGAATTTGAACCGCGCGCAAA
ATGTGTGCTGAGGAATGCCTTTCCTTTGTCTAGCATCGACCAAGCGAACA
GGTTGAGTAAATAAAGTGTTGTGTGTTTTTGTTTTTTGCATCCAACCCCG
CTAGCCGGCGATGTGTGTGTATCATCGGCCATTCACATACACAAAAGCAG
CGACAAGCCATCTTCTTGCGTGGGGCGCAAGTAACATACCATGGTATGGT
ACCGTTTTGGTCCATTGTGCCTCCAGGGACAAGGAGCATCACGGAAAGAC
CAACACAGCCAACGACGCACACAACGTAGGCTACGTATACCAACGCACAG
ACAGTGCGTCTTTTGGTACCCCTCATGCAGGAACCCAACACTTGTTGCGG
ATTGCTTCACCCTCTCGGCGGTCTTCGCTCTTCTGCTTCGCTCTGCTTCG
CTTTGCTTCGCTTTGCTTCGCTTTGCTTCCCCTTTTCGCTTTGCTTCCGC
TTTGCTTCGCCTTACCTTCGCTTCGCTTGGCTTCGCGTTGGTGGGTCAGG
AACAAGGGCCGCCAGATTTGAGGTTCGAGCCTCCCCAGCCTGCGGGAGAG
CTGTCGGTTCTGGCAGAGGCTGTGAAACTCGCAG GTGGGTAGGTGTGTGC
AGACGTCGAGATTGTCGTTTGTCGTGGTGCGCCGCACTACCAAGAGGGTT
GTCATGTTTGACTTTGGCGATGGTAAGTGTATGTCAACCCCTCTTTAGCT
GATTTCTCGAGTGCTCCGCTGCGGTAAGGGTGCGAATGGCCGAATGATAC
GTGTTCGTCATGGTGTCGATGAGACCTTTCCAACGCCGCGCTGTAGTGCA
CCGGCACTTATGAGAGCGTTCAAGCTCTGCCCAACGGGGGGGCTGACACA
TAACAAGTTTAAACATGGGGTTTGCTGCACGTATGGCTCTCTGCCTATAA
ACAGGGGGTGTACTCTGCTGCTGCTGCTGCTGCTGCAACACATGTAATAT
ACTGCTTGCGTAAAGGGTTTTCTTGGGCACCACTGTTTTTACTCTGGCAA
TGTCGTCCGCCTTCGCACAACGACGGCATCTAGCACACCACGGGGTCGAG
CAAGTTGACTGTCCCAGGCACGAACAGGCGTACCACCACTTACTCGAAAA
CACACGACGAACCCGCAAGTGTGCACGATGGCATCACCGTCATCTCGTCT
TTTCGGGATTCGCGCCCGACTAGAAATTCTAGTCGTGAACCCAAGCCAGC
ACAACAACACAACACAACATGCCACTTGTACGGAATGTTCCCGAAATGCT
GAAACCCTCCCTCCCGCTGTTGGGTCGAGGGTGCTTGTCGTCAGAGGCGC
GAGGGAAGGTTCGCCCAAGGGCCTTGTTAGTAACGAGTAGAGAGGGCGCG
CGGGCCCAGGCACAGCACAAGGGGAATCGCCCTTCTACAAACACGTACCA
ACATGATACACAAACCCGCCTTTGCGTCGAGGACACGTGGTCAATGGTAT
AACAACTATGGCATGCAAAACATGAGTACACCAATCCCCCCCCACACACA
CATGGTTCTGTCTCCTATCAGAAAGCGATCCGGCGGACCTGGAAGAGCTC
CTTCGATCCGGTCTCGTGCCGTGGCTGAGGAAGCAGCTGAGAGGAAAAGG
AAAGACGGTGCCCCCGGAGGTGTTCCGCTGGCTGCTGCGCTTGGTTGCCC
GACACGAGGCGTGCGCGGTTGTGGCGGCCGCGGAAGAAACCCTTCTCCGG
CTCTTGGCTGAGGATGACATGGTGAGATAA back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9838:656..6035+
>mRNA_Ecto-sp13_S_contig9838.21484.1 ID=mRNA_Ecto-sp13_S_contig9838.21484.1|Name=mRNA_Ecto-sp13_S_contig9838.21484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9838:656..6035+ (Ectocarpus species13 EcNAP12_S_4_19m) back to top