mRNA_Ecto-sp13_S_contig98355.21483.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig98355.21483.1 vs. uniprot
Match: A0A6H5KCL5_9PHAE (GMC_OxRdtase_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCL5_9PHAE) HSP 1 Score: 267 bits (683), Expect = 8.880e-84 Identity = 133/137 (97.08%), Postives = 133/137 (97.08%), Query Frame = 1 Query: 1 PKQQLTVFPRVTEPHILALAKIRPSVQAPPMMLVTVSVLDPEGRCVVRLNEDDPHRGNPHIERDQREGEPDPLSELDAKKLAWGVGQVRRIAQTSPLLEELRGEVYPGPGVSGAADDTAGEDVDLVGWVKQHVYSNS 411 P QLTVFPRVTEPHILALA IRPS QAPPMMLVTVSVLDPEGRCVVRLNEDDPHRGNPHIERDQREGEPDPLSELDAKKLAWGVGQVRRIAQTSPLLEELRGEVYPGPGVSGAADDTAGEDVDLVGWVKQHVYSNS Sbjct: 465 PDIQLTVFPRVTEPHILALANIRPSAQAPPMMLVTVSVLDPEGRCVVRLNEDDPHRGNPHIERDQREGEPDPLSELDAKKLAWGVGQVRRIAQTSPLLEELRGEVYPGPGVSGAADDTAGEDVDLVGWVKQHVYSNS 601
BLAST of mRNA_Ecto-sp13_S_contig98355.21483.1 vs. uniprot
Match: A0A4D9CPB5_9STRA (GMC_OxRdtase_N domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPB5_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 9.710e-12 Identity = 56/165 (33.94%), Postives = 79/165 (47.88%), Query Frame = 1 Query: 1 PKQQLTVFPRVTEPHILA----------------LAKIRPSVQAPPM-------MLVTVSVLDPEGRCVVRLNEDDPHRG-----NPHIERDQREGEPDPLSELDAKKLAWGVGQVRRIAQTSPLLEELRGEVYPGPGVSGAADDTAGEDVDLVGWVKQHVYSNS 411 P QLTVFPR++EPH++ A + + PP MLVT+++LDP+ R V L+ D G ++ + EG LS++D KL WGV VR IA+TSP+ E + E PGP D E V L WV+++ + NS Sbjct: 534 PDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVLEANVSASEGEGF---LSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGP-------DLVDEGV-LKKWVRKNKFVNS 687
BLAST of mRNA_Ecto-sp13_S_contig98355.21483.1 vs. uniprot
Match: A0A7S0PU53_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PU53_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 2.090e-9 Identity = 54/153 (35.29%), Postives = 70/153 (45.75%), Query Frame = 1 Query: 1 PKQQLTVFPRVTEPHIL---------ALAKIRPSVQAP---PMMLVTVSVLDPEGRCVVRLNEDDPHRGN------------------PHIERDQREGEPDPLSELDAKKLAWGVGQVRRIAQTSPLLEELRGEVYPGPG-VSGAADDTAGED 366 P QLTVFPRV EPH++ A SVQ P MLVTV++L PE R V+ + + + N P + LS+LD K+LAWGV +VRRI +PL E E++PG V G D+ ED Sbjct: 59 PDLQLTVFPRVIEPHVIDRSHKLNQQRSANDGSSVQIPIESSAMLVTVALLQPEARYEVKTSRREKKKKNISTGVLTDMNHTFWGFDFPLPSVGLPPNKTSYLSDLDVKRLAWGVEEVRRIRSFAPLSRETEEELFPGSRIVDGLLDNHIKED 211 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98355.21483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig98355.21483.1 >prot_Ecto-sp13_S_contig98355.21483.1 ID=prot_Ecto-sp13_S_contig98355.21483.1|Name=mRNA_Ecto-sp13_S_contig98355.21483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp PKQQLTVFPRVTEPHILALAKIRPSVQAPPMMLVTVSVLDPEGRCVVRLNback to top mRNA from alignment at Ecto-sp13_S_contig98355:2..412- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig98355.21483.1 ID=mRNA_Ecto-sp13_S_contig98355.21483.1|Name=mRNA_Ecto-sp13_S_contig98355.21483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98355:2..412- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98355:2..412- >mRNA_Ecto-sp13_S_contig98355.21483.1 ID=mRNA_Ecto-sp13_S_contig98355.21483.1|Name=mRNA_Ecto-sp13_S_contig98355.21483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98355:2..412- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |