Homology
BLAST of mRNA_Ecto-sp13_S_contig9834.21480.1 vs. uniprot
Match:
D8LHD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD3_ECTSI)
HSP 1 Score: 112 bits (279), Expect = 1.260e-25
Identity = 65/119 (54.62%), Postives = 71/119 (59.66%), Query Frame = 1
Query: 271 TEELERIWAFYRNESDKCASKPKISGRPRHFHLPSTPAPPEAGW--RGLHLKTFLPPQRAAPVLVTRAAXXXXXXXXXXXXXXXXXXXXXRRR-LSWMTQTCSTAARSFRMVGCCVRPL 618
TEE +R+WAFYRNES KCASK +SG PRHF ST W RG HLKTFLPP+R P +V RAA RRR LSWMTQTCS A RSF + GCCVRPL
Sbjct: 27 TEEQDRMWAFYRNESGKCASK--LSGSPRHFDGGST-----GSWTGRGAHLKTFLPPRRTEPAVVIRAAVAATRTAAVVVALTALAFPRGRRRRLSWMTQTCSVAVRSFPLSGCCVRPL 138
BLAST of mRNA_Ecto-sp13_S_contig9834.21480.1 vs. uniprot
Match:
D8LHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD0_ECTSI)
HSP 1 Score: 70.1 bits (170), Expect = 1.420e-10
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 2
Query: 242 MMMSDSRATGQRSWSGFGPSIGTRVTNAPPSPRFPGVHDTSTSLRRQLHRKRGGGG 409
M SDSRA GQRS SG GPSIGTRV +APPS P +HD ST+ R QLHRKRGG G
Sbjct: 2 MNTSDSRAIGQRSRSGCGPSIGTRVASAPPS--SPALHDASTTQRHQLHRKRGGMG 55
BLAST of mRNA_Ecto-sp13_S_contig9834.21480.1 vs. uniprot
Match:
D8LHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI)
HSP 1 Score: 60.8 bits (146), Expect = 5.590e-7
Identity = 47/77 (61.04%), Postives = 51/77 (66.23%), Query Frame = 3
Query: 396 GVEGVAPEDLSSTAA-GGTGVGHQGXXXXXXXXXXXXXXXXPGVFTTKKTTLLDDPDLQYSS-PVVSNGGVLRPTPQ 620
G G PED SS AA GG+GVG++GXXXXXX PG +LLDDPDLQYSS PVVS GGVLRPTPQ
Sbjct: 193 GGMGGVPEDFSSAAAAGGSGVGYEGXXXXXXAVGDG-----PGGTAATTASLLDDPDLQYSSSPVVSTGGVLRPTPQ 264
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9834.21480.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 1.26e-25 / Id = 54.62 Expect = 1.42e-10 / Id = 69.64 Expect = 5.59e-7 / Id = 61.04 Sequence D8LHD3_ECTSI D8LHD0_ECTSI D8LHJ2_ECTSI
Match Name E-value Identity Description
D8LHD3_ECTSI 1.260e-25 54.62 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] D8LHD0_ECTSI 1.420e-10 69.64 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] D8LHJ2_ECTSI 5.590e-7 61.04 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 1 Start 1 Seed ortholog score 62.0 Seed ortholog evalue 2.5e-07 Seed eggNOG ortholog 2880.D8LHJ2 Model size 740 Hectar predicted targeting category other localisation Exons 3 EggNOG free text desc. phosphate ion transport EggNOG OGs COG5409@1,KOG1162@2759 Cds size 405 COG Functional cat. T Best tax level Eukaryota Best eggNOG OG NA|NA|NA
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681464246.4473696-UTR-Ecto-sp13_S_contig9834:595..610 1681464246.4473696-UTR-Ecto-sp13_S_contig9834:595..610 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig9834 596..610 - 1681464246.477156-UTR-Ecto-sp13_S_contig9834:3473..3517 1681464246.477156-UTR-Ecto-sp13_S_contig9834:3473..3517 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig9834 3474..3517 - 1681464246.4862194-UTR-Ecto-sp13_S_contig9834:4958..5234 1681464246.4862194-UTR-Ecto-sp13_S_contig9834:4958..5234 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig9834 4959..5234 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681464246.4582298-CDS-Ecto-sp13_S_contig9834:610..715 1681464246.4582298-CDS-Ecto-sp13_S_contig9834:610..715 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig9834 611..715 - 1681464246.4678853-CDS-Ecto-sp13_S_contig9834:3173..3473 1681464246.4678853-CDS-Ecto-sp13_S_contig9834:3173..3473 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig9834 3174..3473 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9834.21480.1
>prot_Ecto-sp13_S_contig9834.21480.1 ID=prot_Ecto-sp13_S_contig9834.21480.1|Name=mRNA_Ecto-sp13_S_contig9834.21480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
MRLQAQDFRASTTLPPPFDASSTGSGVEGVAPEDLSSTAAGGTGVGHQGG back to top mRNA from alignment at Ecto-sp13_S_contig9834:596..5234-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9834.21480.1 ID=mRNA_Ecto-sp13_S_contig9834.21480.1|Name=mRNA_Ecto-sp13_S_contig9834.21480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9834:596..5234- (Ectocarpus species13 EcNAP12_S_4_19m)CGCGCCGCGTGGTTGAGGTTGTAAGGACCTTGCTTCAACAGCACCAGCAC
CAGCACCAGCAGCACCAGCACATGATGAATCCCCCCGCATATCTGGGGGT
CGATCCACCAACTCACCAACGGCGACGGGCCACCGTTGTAGCCGCGCTTG
CTGTGCACGATCGCGGTGCATCCGAAGCACAGAGAGCTTGGGGAACCTCG
GTGGTTTCTGTGGCTGGGGGAGGATCGAGTTTAGCGTGACGATGATGATG
AGCGACAGCAGGGCGACAGGACAGAG GTGAGTAGCATCAGTTGCATCGTC
TTAAAAACCTCCTCTAATTACCGCTGTCACTACGGGTGATGCTAGACTGA
TGGTCGATGGGTGATAGCCCCCCCCTGCGCATCTAGCTACCGTCCGGAGA
GAGGAGGAACCTGGGACAACGTTGTCGCAACCCAATGAACTACTCTGTGC
AGGGCTATTGAAGTCCAAGTATACATGCACCGCCGCATGTTCTCGATAAG
GATGCCCAAAGTTTTTCGTTTTGCACGTTGAGCAAGGTTGATAACTGTCT
GTTCGACAACAACAAAAAACTGCAAGTACGATCTTCCGCAAGGTTGCACT
GTAAAGACTTCAACACATCCCGTTCGACTGTGGTCATATCTCGAATGGGT
AGTCTTTCTGTGTTTGTATTTATGTTTCCTAATACGTTAGCCTACGTGTA
GCTGCCATTCGGAACAACAACGACACGTTGCCAAAACTTCCTCAATCCAT
CCTTGTGCAAGGGTTCTCAAATTCGAAGTTTAATTACACATGTGTTCCCC
GAACAAACCGGCGAGTTTGGCGGGGTCACCATCACACGGCTCTTTCCGTG
GGACCGAAGCCGTTTGAGGACCCCGCTTTTGCAGCTGCTGTTGCGGTAGA
GCCAGCGCGATAGCTTGTCCCGCCCGCCGCACAATCCCGTCACGTGTTGT
AGAAGTTCTCGTTTCGCGCTTCCGCCTGCTTCGACACTTTGTGTGCTCTA
GTGTGCGGTATTCGACCCCGAAAAGTTCCCTTCGTCGTAACGTGGTACTA
CTACAGCGACGCCCACGTCTGCTCCTACGCGTGCAATCTACTGTAGTCTT
GTGAAAGTTGTCACCAGCAAAGGAGGATGACGGGTGGAAAGGAGCATGTT
TCTTGCGTCCCTAAGTGGGTGTATCCATGAGGTTGGCGCTTTGGCGTGCA
ACAAGCAAGGCACAACGGCGTACGAACGAGGACCACCTTCAATTGATCAG
CAACAATATTCGCGCTGACAACGAAAATGATGTACCGTATATGACACAAG
ATAACACCCCCCTAGGCCGATTTTCAAAGCTCGATTACTCCACGAGGAAG
AGAATGCACAAACGAAACGATACGTTTTCGGAGAGCTCTCGACCAGACGG
CTTCAACGCCGCCGTTTTCGGCGCTGTGACTCTCTCTCCTGTTGAGACGT
CGAGCTTTGAAATTCGGCTCAGGGGGGGTGATTTCTTGTGTCGTATACGG
TACTGCCTGTTCTTGACAGGAACTCAATGGAGCTCCTGAGTCACACATGA
AATTCATACCAAGCGCATGGCACAAATGTTGAGCCTTTTCTCGCACGGAA
GTACAGACAGCCAATGTCCCGCCTCTCCAACATCAACTGTGCGAGATACC
CTCACCTCCACATGGGTAACCCCAACCGCCACGGTGACGCCTCCTGCGCC
TCCCCCCGCCCACACAGGAGCTGGAGCGGATTTGGGCCTTCTATCGGAAC
GAGAGTGACAA ATGCGCCTCCAAGCCCAAGATTTCCGGGCGTCCACGACA
CTTCCACCTCCCTTCGACGCCAGCTCCACCGGAAGCGGGGTGGAGGGGGT
TGCACCTGAAGACCTTTCTTCCACCGCAGCGGGCGGCACCGGTGTTGGTC
ACCAGGGCGGCGGTGGCGGCAACAAGGGCAGCAGCAGTGGTGGCGGCGGC
GACGGCCCTGGCGTTTTCACGACGAAGAAGACGACTCTCCTGGATGACCC
AGACCTGCAGTACAGCAGCCCGGTCGTTTCGAATGGTGGGGTGCTGCGTC
CGACCCCTCAG GTGGGATTGGGTTGGACTGTGTGTTGGATGTCTTCTGTT
GAGGAGGTTGGACGATAGTAGGGTACAGCCTCCACGTGACGGGTGTGCCT
GCGAAAAGGAATTAAAATAAGTAGTGTGTGTGTATGTGTTTTTCTTGCTT
GTTCCACACAATCGCGTCTACACGAGGACCGACGGTGTTTGCCTATCCTC
TCCGTCCTCCCGCGTCCACACTTCTGCCCTAGCATACATTGGCGTGGGTA
CCCCCCCTCTCCCGCTCGCGCTCGTCTCAAGGAAAAGGTTCCTGTGCGAA
GTGCTGTCGATCAGCTGGCTATTTTGGACCGTTTCGCCACGCCGGGGGCG
AGGTTGTGTAGGGTTGGGTTACGTAGGGAAGGTTGGGGTTTTGGGGTCGT
GTTGGGTCCACCGGTCGGTCGGTCGGCCGGTCGATCTATTGGTCGGTCGA
TCGGGCGGCCAGATTCGTACGGACTTCTTCATGGTAGCTCGGCTCCTGTG
CGTCACTTCTATCTACATGTTTGTGGCAGAGTGTTTTTGCGCGTTGGTGT
GTGACTCTTTCTTTAGAAGGGCTTGATTGGGCCGTGTTGGTTACAAGTGC
CGCCTATTTGCGCAATCGGTTCACGTGCGATCAGGCCGGTTTCCGGGGTT
GTTTTCTTGCTCTGGTGTTGGGTTCGTCTTCACCCCAACCGTGTCGGGTT
GGGCTGGGTTGGGTTGAGTTGGGTTGGGGTTGGACCGCCTTCTTCGATCA
CGCCGCCGTCGCTCTGTCTATTGTCGGCGTCGTTGCCCTTGTATATATAG
GTCAGAGAACCTGTCTCATTACCTCGTGCCTCAGCATCCAGAGAACGGGG
AGGGATGGACGTCAGTTGGCGATGCCAACGAGAACGGAGAGGCGCCATCA
CTGAAGCACCTGCAACAAAAAATTCAGGCTCAAAAAAAGACAAATTCAAA
AAGTCGACAGGTGCTCAGCAGCCAAGAAGTCTACATAAAACCCACAAGTA
CAGCAGTCGATGACGGGGTCTACCCCCACAGAAGTGTAAAGAAGAAACTA
GCCTATGGCGAAATGAGGGTAGTACCCCCTGTATTCTGTACCGCAGACAA
CAAATTTGTTCTGCGGAGAGCAGTAAGAGATCGTTTGACTGGAATTTGGT
TGTATGCATGGTATAACCTCGTCGGTGCAACGCCAGGAGCCGACCCCCGA
CAACTTTCGTCTTACACGTTGACGAGATGTTTCAAGTAGACGGGAATAAT
CATACGCGGAAGAAATTGTGCAGCTAGAGCGCCACGTTGGCTTTGCCATC
AACCTGCAAATGCCTACAAAGCGAGATGAGAAGGAAGCCGCTATGCGGCG
TTCAACGCTCCTTTTCTATCTCTCCCATCCTTCTTCAAACTTGCTGTATC
GTACCGAGAAAACGAACGACTGAACCAGCCTATCGTCGGCGCAATCCCCA
TTCATGGAGGACAGGACTATCCTCACACACAAAACACTCAAGAGAGATAC
CATGTGCCCATGAAGGACAGGCCTATCCTCTTAAATAACACACAGAAACA
GCCATGAGGAACAGTATGGAGCAGGCGGCCCGTCCATGCCCACTCACTGC
TGTGAGCAGTCCTCCTTTTGCATGCTTACAGAGACGAGCCTATCGATGGA
GAAACGAACCTCGACTGTAGCAAGACGTTCTCACCGACGTGGCGTCTGTC
AACAGTCACCCTCTTCCCGGACGTTCAACCGCCTCACTACTAATTTTGCA
CATGCACAAACAGACGCCGATGTTTACCAACATCAGCAGCAAGTCAGTGT
CCTTCCAGTTTTCTCGCAAGATACTTCGTTGCTGTTGCCATGATACACTG
GGGAATCATTTCTACATCCGCATGTACATGTAAGAGACAACCCTACCCCT
TTCTTTCCTCCAATGTACCCTCCTCTCCTCTCGAATTTCTGTGCACTCCC
AACCGCACGTTCAATAACGTTTTCACGGAGGGCAACCACCATCTCACTCT
GCGCCGAGCCACCGCATCCGTCGTGCATGCCACTTGGCAGTAACAAAGCC
CAAACCACGACCGTCCCAAAGCCTTGTGCCTCCGAAACCCCCTTTTCTCC
ACACACGACAAACACACGAATCAACGCACGCGCGGAACGCAAGGAACGGT
GCCCTCCTGTTTACCCCGGGCGAGCACACACATATCCTCCCGTTCAATGG
AACAGCGATGCCAGGGGAACGTCGCCGACGCCGCTGGATGTCTGGATGTA
CTGAAGATGGTTTATGCAGCAACCAACCGTGATTAATTTGGCGCGGTGCA
TTTTAAAACAGGACGCATTTGCGTCCCCACCAAAACCACGGGTCGTCCTC
TACATACACCCACCAAGTACGTGATCGCCAGCATCAAAGGCGCAAACGCT
CTCCTGCTCGTCACGTGTCTCCTTACATACCATCCCTGCCTGATCCTTTC
CTAAATGCTAAAAAACAAGGTCTCCTCCTCACGCGCCGCCGATCCTGCCG
TCATGATGCCAGCGAGTAGTCCAGCCGTTGCTGAACAGCGTGGAAGTCGC
AATCAAGAGCCTATAGCCATGTAG GGTGCGCGATCTAGC back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9834:596..5234-
>mRNA_Ecto-sp13_S_contig9834.21480.1 ID=mRNA_Ecto-sp13_S_contig9834.21480.1|Name=mRNA_Ecto-sp13_S_contig9834.21480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9834:596..5234- (Ectocarpus species13 EcNAP12_S_4_19m) back to top