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Homology
BLAST of mRNA_Ecto-sp13_S_contig9830.21477.1 vs. uniprot
Match: A0A6H5KV29_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV29_9PHAE) HSP 1 Score: 287 bits (734), Expect = 4.380e-89 Identity = 143/161 (88.82%), Postives = 147/161 (91.30%), Query Frame = 1 Query: 40 MPNGGKTRERVAGIAAPGDPVGLSAPSAKRSIGRLVERISLKLGNNNVMATAGAAAGRDGDGGGRRRQYVRTFEEEHPYKQPLLVKSFDGDVAAGRPTDLPGEFIGDQRRSDSWKTDDAAEQGRYDAAEARGYGLYSLHAVLGQGTFGRIHLASWRHRGGG 522
MPNGG+ RERVAG AAPG +GLS PSAKRSIGRLVERISLKLGNN+VM TAGAAA RDGDGGGRR QYVRTFE+EHP KQPLLVKSFDGDVAAGRP LPGEFIGD RRSDSWK D AAEQGRYDAAEARGYGLYSLHAVLGQGTFGRIHLASWRHRGGG
Sbjct: 1 MPNGGRARERVAGTAAPGASLGLSTPSAKRSIGRLVERISLKLGNNDVMETAGAAAARDGDGGGRRGQYVRTFEDEHPCKQPLLVKSFDGDVAAGRPAGLPGEFIGDHRRSDSWKIDGAAEQGRYDAAEARGYGLYSLHAVLGQGTFGRIHLASWRHRGGG 161
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Stop | 0 |
Start | 0 |
Seed ortholog score | 309.3 |
Seed ortholog evalue | 1.4e-81 |
Seed eggNOG ortholog | 2880.D8LH93 |
Model size | 663 |
KEGG ko | ko:K08793,ko:K13303 |
KEGG Pathway | ko04068,ko04151,map04068,map04151 |
Hectar predicted targeting category | other localisation |
Exons | 2 |
EggNOG free text desc. | protein serine/threonine kinase activity |
EggNOG OGs | KOG0603@1,KOG0603@2759 |
Ec32 ortholog description | cAMP-dependent protein kinase catalytic subunit (PKA)-like |
Ec32 ortholog | Ec-24_001050.1 |
EC | 2.7.11.1 |
Cds size | 660 |
COG Functional cat. | G |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko01000,ko01001 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1681464246.2074292-CDS-Ecto-sp13_S_contig9830:816..1179 | 1681464246.2074292-CDS-Ecto-sp13_S_contig9830:816..1179 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9830 817..1179 - |
1681464246.2246025-CDS-Ecto-sp13_S_contig9830:2992..3289 | 1681464246.2246025-CDS-Ecto-sp13_S_contig9830:2992..3289 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9830 2993..3289 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9830.21477.1 >prot_Ecto-sp13_S_contig9830.21477.1 ID=prot_Ecto-sp13_S_contig9830.21477.1|Name=mRNA_Ecto-sp13_S_contig9830.21477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=220bp
HISHTHTRCVTRSMPNGGKTRERVAGIAAPGDPVGLSAPSAKRSIGRLVE RISLKLGNNNVMATAGAAAGRDGDGGGRRRQYVRTFEEEHPYKQPLLVKS FDGDVAAGRPTDLPGEFIGDQRRSDSWKTDDAAEQGRYDAAEARGYGLYS LHAVLGQGTFGRIHLASWRHRGGGLAAAASSSASLEDGPSSHGGGGGRAA GAGGVGAGETRERRTTPRAR back to topmRNA from alignment at Ecto-sp13_S_contig9830:816..3289- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig9830.21477.1 ID=mRNA_Ecto-sp13_S_contig9830.21477.1|Name=mRNA_Ecto-sp13_S_contig9830.21477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9830:816..3289- (Ectocarpus species13 EcNAP12_S_4_19m) CACATCTCGCACACGCACACGCGCTGTGTCACGCGTAGCATGCCCAACGG
CGGAAAAACACGCGAGAGAGTAGCTGGAATCGCCGCCCCGGGTGACCCAG
TAGGACTCTCGGCACCGTCGGCGAAAAGGTCGATTGGGCGCTTGGTTGAG
CGCATTTCTCTCAAGCTCGGGAACAACAACGTCATGGCGACAGCGGGTGC
TGCTGCTGGGAGAGATGGGGACGGAGGGGGGAGGAGGAGACAATACGTTA
GAACGTTCGAGGAAGAGCATCCTTACAAGCAGCCTCTTCTGGTGAAGGTG
AGCTCGTCTGCTCTGTCGTGTATCTTGCTTGCGTGTGTGTGTGCGGAAAT
TTCCTGAACACGTGCTTGGGCGTGGTGTGTTGGCGCCTTTTCGCCCGCAT
GGACCGTGACAGCAGTCCTTGACAGCAGTACAGCAGTCAATGTTGTAGTG
TACTGCTGTAGGCGAGCAGAGGGTTGTCCGGACTTGATGAGGTTTGATTG
GGATCTGTTTAACACGGAACATTGTCGGGGGACCTTCGCAGATGATCGAT
CCACACGTACACTCTGGGACACAATCGCCGCGCATTGTACTCCTACTACA
TGCACACAGCAGTGTGTTGATGTGGTGTCAAAATACCTTGCTCTTGCACA
GCATACAGCAAAGTGGGCCCTCCCGAATCAGGCGGTCTCAATGAGGCGGG
CGCTGTAAACAAGGCGGGTGTTGGCTGGCATGGACGGAATAGTCGAGTTG
TTCCACACATTGAATAGGCTGCTGCCCCATGTAAGGCTGAGGCGGTCATT
ATCAGCTGCCCCACCACCGCCTTACTCGGGACCACAGCTGTACTCTAAGG
GAATGCCATGAGAAACACGACCCTCCCCCTCCAGTGCTCCGCTCTCTCAA
GCGTACCCATCTCCTCCTGAGCCCCAACACTGCTGTTGTTGTTGAAGCAA
AAGGTGCAGCATCGTCTAGCGATTTTAGAGAACACCCCCAAACATGGAAG
ACCAATCCCGACACAATGAAAGACTCGCCAGGACTTAGCTGTTTTCGCTG
TCAAGGCTCAGTGATGCCGCCTTGTTGGACACGCTTAACATGTTGTAAGT
TTTGAGCGGTGGCAAAAATCGGGTACACCCGGTCCACACACGGCCATATT
CGGGTACCCCTACAAGACGCTGCTTGGAGCGACCGCATGTCACCATCTGA
TTGGCCGACGCCCACTCCTACCCGACCTCGACCGTCTTTCCATCGGGTGC
ACCCGATCTTGGCTACTCACCCCCCGTAGGGGTACCCGGTTTTTCTTTCC
CCTACCCGAAAATGGCTGAGCTGTTCGACCAAACCCCATGCACACAATCA
CGGGTCGGAAGCACAACACTAGCCCTCGTTTGTCGCCAATGAAATAGTTG
TGGGAGGGAGAGAGTGTTTATATTTTTTAAATGAGTTCCGTGTGTGTCGC
AGGTCGTGAGGGAGGTTTTCATCCAGCTCGTCTTCTCGATCATTTGCACA
GACCGCCTGCCGTTTCCCCCAAGGGAGACCTCCACCGCCGGCGGGGGGTC
TGCCTCCGCCCGAACGTCCGAATTCGAGGGCAGGGCGTTGCTGACGTGTA
CTTGTGTGCATGGGGTTTGGTCGAACAGGTCAGCCATTTTCGGATAGGGG
AAAGAAAAACCGGGTACCCCTACGGGGGGTGAGTAGCCAAGATCGGGTGC
ACCCGATGGAAAGACGGTCGAGGTCGGGTAGGAGTGGGCGTCGGCCAATC
AGATGGTGGCATGCGGTCGCTCCCAGCAGCGTCTTGTAGGGGTACCCGAA
TATGGCCGTGTGTGGACCGGGTGTACCCGATTTTGGCCACTGCAATTACG
TTTTCTCCTAAGTACAGCCACGTCGGACACAGCTCGTCTATTTCCTTCCT
CCCCGACGAACCACACGGGGAACGTGAACCTTTATTGGAAAACCCTTTTT
TCGTTGGCATTTGACAAGTCGGACCCTCTACGCTTCATCTCTCTCTCTCT
ACCGGCGTGTCATATTGCCTTGGTACAGCAGTATGCCTTCCTGCCGACGC
AACCACGCTGTCCTACAGTACCTTTCCTTGTCTCTCCTTTTCTTTAATAA
ACTATGATAGAGCTTCGACGGAGATGTCGCCGCCGGTCGTCCGACCGACC
TCCCCGGGGAGTTCATCGGAGATCAGAGGCGTTCCGACAGCTGGAAGACC
GACGACGCTGCCGAGCAGGGGCGCTACGACGCCGCCGAGGCGCGGGGGTA
CGGCCTCTACTCCCTCCACGCCGTCCTCGGGCAAGGAACCTTCGGCCGCA
TCCACCTCGCCTCCTGGCGGCACCGCGGGGGCGGGCTTGCCGCGGCAGCA
TCATCGTCCGCGTCGCTTGAGGACGGCCCATCGTCGCATGGTGGTGGTGG
TGGTCGTGCGGCTGGAGCAGGAGGGGTAGGCGCGGGAGAAACACGGGAGA
GAAGGACTACTCCACGTGCCAGAT back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig9830:816..3289- >mRNA_Ecto-sp13_S_contig9830.21477.1 ID=mRNA_Ecto-sp13_S_contig9830.21477.1|Name=mRNA_Ecto-sp13_S_contig9830.21477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9830:816..3289- (Ectocarpus species13 EcNAP12_S_4_19m) CACATCTCGCACACGCACACGCGCTGTGTCACGCGTAGCATGCCCAACGG CGGAAAAACACGCGAGAGAGTAGCTGGAATCGCCGCCCCGGGTGACCCAG TAGGACTCTCGGCACCGTCGGCGAAAAGGTCGATTGGGCGCTTGGTTGAG CGCATTTCTCTCAAGCTCGGGAACAACAACGTCATGGCGACAGCGGGTGC TGCTGCTGGGAGAGATGGGGACGGAGGGGGGAGGAGGAGACAATACGTTA GAACGTTCGAGGAAGAGCATCCTTACAAGCAGCCTCTTCTGGTGAAGAGC TTCGACGGAGATGTCGCCGCCGGTCGTCCGACCGACCTCCCCGGGGAGTT CATCGGAGATCAGAGGCGTTCCGACAGCTGGAAGACCGACGACGCTGCCG AGCAGGGGCGCTACGACGCCGCCGAGGCGCGGGGGTACGGCCTCTACTCC CTCCACGCCGTCCTCGGGCAAGGAACCTTCGGCCGCATCCACCTCGCCTC CTGGCGGCACCGCGGGGGCGGGCTTGCCGCGGCAGCATCATCGTCCGCGT CGCTTGAGGACGGCCCATCGTCGCATGGTGGTGGTGGTGGTCGTGCGGCT GGAGCAGGAGGGGTAGGCGCGGGAGAAACACGGGAGAGAAGGACTACTCC ACGTGCCAGA back to top
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