mRNA_Ecto-sp13_S_contig9827.21474.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig9827.21474.1
Unique Name	mRNA_Ecto-sp13_S_contig9827.21474.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig9827.21474.1 vs. uniprot
Match: A0A6H5JSI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI9_9PHAE)

HSP 1 Score: 404 bits (1037), Expect = 1.980e-131
Identity = 205/223 (91.93%), Postives = 210/223 (94.17%), Query Frame = 2

Query:    2 THWTWYATTSYFVVSALSAFLCWRAITVTVASGPVRNSDSAFAAPTSSRPPDRTGSPQPVPAALRFLQLALWSTACISSLIVVAIFWGALYDGDKLTTVDEQAHAFVACIMLLDQFLVADEFKLRYILFPQAFGVIYILFNVGWYYLAPDDDRLIYIILDWEDNTLVACIYAFGAILVGAPLFGLFHLGIFRLREKVYQNRLARSSKAAAEAQAIELKESDQA 670
            THWTWYATT+YFVVSALSAFLCWRAI VTVASGPVR+ D AF APTSSRP DRTGSPQPVPAALR LQLALWSTACI SLIVV+IFWGALYDGDKLTTVDEQAH FVACIMLLDQFLVADEFKLRY+LFPQAFGVIYI FNVGWYYLAPDDDRLIYIILDWEDNTL ACIYAFGAILVGAPLFGL H GIFRLRE+VY NRLARSSKAAAEAQAIELKESDQA
Sbjct:   60 THWTWYATTTYFVVSALSAFLCWRAIAVTVASGPVRDGDPAFDAPTSSRPSDRTGSPQPVPAALRHLQLALWSTACIVSLIVVSIFWGALYDGDKLTTVDEQAHVFVACIMLLDQFLVADEFKLRYVLFPQAFGVIYIFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHFGIFRLRERVYHNRLARSSKAAAEAQAIELKESDQA 282

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BLAST of mRNA_Ecto-sp13_S_contig9827.21474.1 vs. uniprot
Match: D7G734_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G734_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 2.970e-80
Identity = 140/176 (79.55%), Postives = 144/176 (81.82%), Query Frame = 2

Query:  143 SRPPDRTGSPQPVPAALRFLQLALWSTACISSLIVVAIFWGALYDGDKLTTVDEQAHAFVACIMLLDQFLVADEFKLRYILFPQAFGVIYILFNVGWYYLAPDDDRLIYIILDWEDNTLVACIYAFGAILVGAPLFGLFHLGIFRLREKVYQNRLARSSKAAAEAQAIELKESDQA 670
            SRP DRTGSPQPVPA LR LQL LWSTACI SLIVV IFWGAL                     LLDQFLVADEFKLRYILFPQAFGVIY+ FNVGWYYLAPDDDRLIYIILDWEDNTL ACIYAFGAILVGAPLFGL HLG+FRLRE VY NRLAR+SKAAAEAQ+IELKESDQA
Sbjct:    3 SRPYDRTGSPQPVPAVLRHLQLVLWSTACIGSLIVVTIFWGAL---------------------LLDQFLVADEFKLRYILFPQAFGVIYLFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHLGLFRLRESVYHNRLARTSKAAAEAQSIELKESDQA 157

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BLAST of mRNA_Ecto-sp13_S_contig9827.21474.1 vs. uniprot
Match: A0A6H5JMZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ5_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 3.810e-27
Identity = 70/202 (34.65%), Postives = 112/202 (55.45%), Query Frame = 2

Query:    2 THWTWYATTSYFVVSALSAFLCWRAITVTVASGPVRNSDSAFAAPTSSRPPDRTGSPQPVPAALRFL---QLALWSTACISSLIVVAIFWGALYDGDKLTTVDEQAHAFVACIMLLDQFLVADEFKLRYILFPQAFGVIYILFNVGWYYLAPDDDRLIYIILDWEDNTLVACIYAFGAILVGAPLFGLFHLGIFRLREKVYQ 598
            T+W WY    YF+VS  +A+    +     + GPVR + +          P R    QP+ +  R L   Q+  W+ AC+ SL++V +FW AL+D   LT+ D  AH  +A +M +DQ LVA +F+ + +L    F ++Y+ FN+ ++  AP+D+R+IY  +DW ++   +  +A     V  PL GL H  +FRLRE +Y+
Sbjct:   64 TYWGWYMAAIYFLVSTATAYSFLGS--PMASDGPVRGTHAVA--------PHRGNRNQPLSSNRRALLGFQVFSWNVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPVMAIDQLLVATKFERKQMLASFLFSIVYVAFNIVFFLTAPEDERVIYGQMDWGESVGNSAAFAAVVTFVLVPLGGLIHYCVFRLREYIYE 255

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BLAST of mRNA_Ecto-sp13_S_contig9827.21474.1 vs. uniprot
Match: D7G733_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G733_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.210e-26
Identity = 68/196 (34.69%), Postives = 106/196 (54.08%), Query Frame = 2

Query:    8 WTWYATTSYFVVSALSAFLCWRAITVTVASGPVRNSDSAFAAPTSSRPPDRTGSPQPVPAALRFLQLALWSTACISSLIVVAIFWGALYDGDKLTTVDEQAHAFVACIMLLDQFLVADEFKLRYILFPQAFGVIYILFNVGWYYLAPDDDRLIYIILDWEDNTLVACIYAFGAILVGAPLFGLFHLGIFRLREKVY 595
            WT    T+YFV+S +S+ LC   ++        R   +        RPP   G+  PVP   R+LQ   W   CISS++V+++FW  +Y+ D   T    +   +A +MLLDQFL+A E K +Y      F V+YI +NV +YY    +DR+ + + DW++    AC++ F  +  G P F   H+ ++RLRE++Y
Sbjct:   80 WTHMLATAYFVISLISSLLCMAYLS--------REKPAPVEEGKPKRPPPVKGTRSPVPCYFRWLQHISWVLTCISSMVVLSVFWMTIYESDVPVTSVYVSSTILALLMLLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDERPGRACLWVFLILAFGVPGFTALHVFVYRLRERMY 267

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BLAST of mRNA_Ecto-sp13_S_contig9827.21474.1 vs. uniprot
Match: D7G735_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G735_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 6.400e-25
Identity = 62/170 (36.47%), Postives = 98/170 (57.65%), Query Frame = 2

Query:   98 GPVRNSDSAFAAPTSSRPPDRTGSPQPVPAALRFL---QLALWSTACISSLIVVAIFWGALYDGDKLTTVDEQAHAFVACIMLLDQFLVADEFKLRYILFPQAFGVIYILFNVGWYYLAPDDDRLIYIILDWEDNTLVACIYAFGAILVGAPLFGLFHLGIFRLREKVYQ 598
            GPVR + +          P R    QP+ +  R L   Q+  W+ AC+ SL++V +FW AL+D   LT+ D  AH  +A IM +DQ LVA +F+ + +L   +F ++Y+ FN+ ++  AP+D+R+IY  +DW ++   +  +A     V  PL GL H  +FRLRE +Y+
Sbjct:    5 GPVRGTHAVT--------PHRGNRNQPLSSNRRALLGFQVFSWNVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPIMAIDQLLVATKFERKQMLASFSFSIVYVAFNIIFFLTAPEDERVIYGQMDWGESVGNSAAFAAVVAFVLVPLGGLIHYCVFRLREYIYE 166

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig9827.21474.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig9827.21474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5JSI9_9PHAE	1.980e-131	91.93	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G734_ECTSI	2.970e-80	79.55	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JMZ5_9PHAE	3.810e-27	34.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G733_ECTSI	1.210e-26	34.69	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D7G735_ECTSI	6.400e-25	36.47	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig9827:1397..5638-
coding sequence from alignment at Ecto-sp13_S_contig9827:1397..5638-

protein sequence of mRNA_Ecto-sp13_S_contig9827.21474.1

>prot_Ecto-sp13_S_contig9827.21474.1 ID=prot_Ecto-sp13_S_contig9827.21474.1|Name=mRNA_Ecto-sp13_S_contig9827.21474.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MLLDQFLVADEFKLRYILFPQAFGVIYILFNVGWYYLAPDDDRLIYIILD
WEDNTLVACIYAFGAILVGAPLFGLFHLGIFRLREKVYQNRLARSSKAAA
EAQAIELKESDQA*

mRNA from alignment at Ecto-sp13_S_contig9827:1397..5638-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig9827.21474.1 ID=mRNA_Ecto-sp13_S_contig9827.21474.1|Name=mRNA_Ecto-sp13_S_contig9827.21474.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9827:1397..5638- (Ectocarpus species13 EcNAP12_S_4_19m)
GACACACTGGACCTGGTACGCTACGACCAGCTACTTTGTCGTTTCTGCCT
TGTCGGCCTTCCTGTGCTGGAGAGCGATTACGGTTACGGTGGCCAGCGGG
CCCGTCAGGAATAGCGACTCAGCGTTCGCCGCACCCACATCATCAAGGCC
GCCCGACCGGACTGGCTCCCCGCAGCCCGTGCCGGCGGCGCTAAGGTTTC
TGCAGCTCGCGCTCTGGAGCACGGCGTGCATAAGCTCACTAATCGTCGTG
GCCATATTTTGGGGGGCCTTGGTGAGTAGTCTGCAGGTCCAGCTCGGAGT
GTTTTTTTGTTCAGCTTTGTGATTTTGTGGTCGTTGTTTTTTCCTTCCGT
CATTCTTGGTGGATGGGCCTCTGCGTAGCATGCCTGAGACGATGTGTAGC
CGGTAAACTCGTCACGTGCGATGCGCGCTCTCGTAGAAAGGGTGAAAAGG
AAGGGAGGAGGACCTTCGCAAATGGGTCACTCAGAATTCGCGGCGCACTG
GCCGTGTGTTTGCTCCACAGGAACAAATATCAAAATGTCAAAATATGCCT
GCTTCAATGTCGCGACCGTGAAGTTGCACCGGTGGACCATGTTCAGGAAC
TGTTTGCTCCACGCGAAATGACCTGCTTTGCAAGCGCTTTCCACTCTTGA
CTTGCTGCTCACGGATAATCGGAGCCGAGTGCTACGGTGAATACCAGCCA
CCGATGGACGTGGCTTCATTTTTTTTTTTCTCATCTCTTCGATGCGTGCC
TATTGTGCAGTATTGCCGAGTGTATTGGCGCAATGCACTCCACCCGTATC
AAGAGAGGTAATTGTGGCGCAATTTTTTCGACAAAACATCCCACCCCCCC
CCCCCTCCCGCTGCTGCTTCCACTTCGATCGAAACACGTGTGTGTGCTAT
CATGCCCACTTTTAGTACGATGGAGACAAACTCACCACGGTCGACGAACA
AGCACATGCTTTCGTAGCCTGCATCATGGTGGGCACGTAATCATGTAACT
GTAGGAGGAACTGCTGTTGCGGTTGGCATCGTGAGCGTTGTGTATCTTGC
CTGTTGGTCTCGACGTCATGCTGGTAGTCTCCTGAAATGTGCCCTCGAAA
TGACCTCTGCTGTGTTCCGCTATGCCTTCTCACGCTCAAGTCCCTTCTTC
CTGGAGACCTTTGGACCGTTTCTGCCCTCAACAACCAGCATGGTGCCTGC
ATGGAACGCTTACTTATTCGCCCTTCTACGTTGCTTCCCTCTGTTGCGCG
TGCCTGCACCCAGCTGCTGGACCAGTTCCTGGTGGCCGACGAGTTCAAAC
TGCGGTATATCCTCTTCCCGCAGGCGTTCGGGGTGATTTACATTTTGTTC
AACGTGGGCTGGTATTATCTCGCCCCGGACGATGACCGACTGATTTACAT
CATCCTCGACTGGGAAGACAACACTCTAGTGGCGTGCATCTATGCCTTTG
GCGCGATTTTGGTTGGCGCACCGCTCTTTGGGTTGTTCCACTTAGGCATC
TTTAGGTAAGAATTAGGTATTTAACAGCATCCTATTTCACCCCGGTCTTC
TTCCCTTCACCCCAAGTCGCGCAGACGTCGTATTAATAGTACATTGTCAA
CATGTCGCATGTCTCGAGTTTCGCCAGCTCTTGAAGCAGTCCCGATTATT
ACTTCTCACTTTTTTTCCTCGCACCCTGAAGGACCCGGCCCCCTTTCTCT
TCCTCAGCCTTCTACGCGGGTAGGGTCGAGCGTCGAACGGCATTTATATG
TGAAGGGTGACCTCGTGGTAGTTCGCTCGCCTGGCTAGCCCTGATATTAT
TCCCTTCTCGCCAAACCCGTCAAGGTTCACACCACAAAAGTCACCGGTGT
ATCCCACGCTGCATCGTTCTCGAGTCCTTGTTTGCAATACCGGGACTGAG
CTAGCGGAACAGGGTGTGTCGGACACCTTTCGTTGTTTGGTTCGATAGAT
GTTGAGTCGACATCCGAGTTGAACACATGTTCCAACGGAGGGAGGAAAGC
CCTTGGTTGCCAGCACCGGGGGCGCCTTCCCACCTCGATGCCACCATGCT
CGTCATCATGAATCGGGGTCTATACGCCGCCAAAACTTGTCTGGGTTGCA
CCCGCTTGGTCTTGAAAACAGCCCAATTTGGCCATCATCCCCCAAACAAC
GATCACGTTTTCCCATCCCCGCGAAAAACAGACTCCGCGAAAAAGTCTAC
CAGAATCGTCTAGCCAGAAGCTCGAAGGCCGCAGCGGAGGCCCAAGCGAT
CGAATTGAAGGAGAGCGACCAAGCTTGAGATCTTGCTGTTTGATGGGCGG
TTGAGGAGCTCGGCAGGAAGGAGTGGGTTGTTGTAGTATAAGGCAAGAGA
CTGCTGACACGGACGAGCGGGTTGCAGTAGTGGACTATTTTACAGCGAAT
GGTAGAGTGCTGAAGGAAGACCTTGTTCGTGGAAGGCGGTAGAAAAATCG
TAGTATGATGCGGGGACGCAGCATCAACGTCCCCGGAAAAAGCCGCAGGG
TAGGGCACACTCGCAAAATTGCTAGGAAAACAACTCGGAGGACAGGTGGC
CCGCCGAGGAGCGTCGGGCTAGCAGAAGTGGCCTAACCCTCGGGAAAGTG
GTGGGCTTGCAGGAGGGGAGCTGTTTTGCCAGAATCTGGCCAGGGAGAAC
CAGCTAGATCCCGTACATCTGCCACCGATAGATGTGGTATGCAAACATAT
TTTTAAACATTCGAGGCTGATCCGTGGTTCACCCTCGAAGAATTGGCGCT
AGAATGAGATTTTTCGACACGTCCGAACATGACCGGCACCTCCACATGCA
AAGTAGAAACGTGGTGATTACTTGACGTTGTATTCTATACTCGATTTTTG
TGTTCTATAAATTATGAAGTATTACTATCAGCGGGAATTGCTACAGGCTT
GACCGAGGTGTTCTGGAGTGCAATTTTTTTGTGTGTTTGGAGAATTTCCT
TACCTGACGGTTCTACCAACCGGAGCGACGGCGAAAGTTGTCGTACACAC
CCACAAGGTTAAACGTTTTGTGTGCCGGTATGAGGTGTTACCCTGGAGTA
ACGTGAGACAGTAGCTCTTCGTAGCGCCAAAGGGCGTTCAGCTCTATTTA
GCATGCTTTTTTCTTGAATCAAAAACGAAGAGATTTGTCGCGTTTGCGTT
TCACGTATTTTGCTTGGACACATGCATTGGTGTCTGTAGATGATATATAT
ATATATTTTGTGTTGTGTTGTTTTCAAGTAGACCAGTATTATAGGAGGGA
CCACCATTCCCGTATGGTCGTGTAATCCTCCTCCTTTTGTGGTCATATGG
TGCCGTCGCAGTTTTCCGTCTGTGGTCACGGACGATTCGACAGCACTTGT
CGTACACCGCCGCCCTCAAGAAGAAGTTCACCACCGGCGGTTTCTTTTCG
CTCGGGGGGGAGGGGCAAGAACGAGTGTTGTAGCACGATGATTTGTTGGC
GAGTCAAGTGTAGCATGACGATCGTTTTGGGTCCTCTCGTCGTCTCAGGC
GCTGCAAGTGTCTGTCTGTGTGGTCGACCAACAGCGTAAGAACCGTCGGT
ACGTTCATAAGGTTGGGGTGTGCTTGGCATGATGCTTGATGGGTGCCTCC
CCGCAAAAAAGGGCACGTGGAGATGCGACCTAGCCCACCATGATGCTGAC
TTGCATGTTGTGCGCGTGCTCGATGTTGTTGCGTCTTAGTTTGAGTTGTA
TCTTGCGAAGAAAGCCCTTCGTGCGCCCCTCGAGGGTGGGGAGTGTGGTT
GGCCCGGTCGGCCAAGAGACAAAAGTGCACCATCAACAGAACACCCGCCT
GGCTTGGTAACGTGTGAAGCTTGTTACTGTTTTGTTGTCCGGTTCGCTTC
CGAGTTGAGTACTGGGCTGTGGAGCCAGTTGCTGCCACCTGTGGACTAGA
CTCTGTGTGTACTCTGTAGAATAGGGTGGAGTACAAATGTGGGAGGTACA
GCAGTACACCACATAAGTTTTCGAGAGTGTGTGGTGGAACCTCCTGGAGT
CTCATGATCAGCTGTGTCCCGAGTTCGTCGCGGGACGCAAGATTACTTTC
GAGTTTTTTTTTAATTTATTATGAGTCAAATTATGGTGCGCGTCGCGTTA
GCTTGACGTTCTTATGGAAATGGATCATGAATGGATGGCACAGGCGACCA
CGGGAATAGACCGCGTCGAGTGTTGGATCAGTACGGACACACGAAGGTAC
TGGGTAGAGAGAGATCAGGACGGTTCTTAATGTGAAGACAAC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9827:1397..5638-

>mRNA_Ecto-sp13_S_contig9827.21474.1 ID=mRNA_Ecto-sp13_S_contig9827.21474.1|Name=mRNA_Ecto-sp13_S_contig9827.21474.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9827:1397..5638- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTGGACCAGTTCCTGGTGGCCGACGAGTTCAAACTGCGGTATAT
CCTCTTCCCGCAGGCGTTCGGGGTGATTTACATTTTGTTCAACGTGGGCT
GGTATTATCTCGCCCCGGACGATGACCGACTGATTTACATCATCCTCGAC
TGGGAAGACAACACTCTAGTGGCGTGCATCTATGCCTTTGGCGCGATTTT
GGTTGGCGCACCGCTCTTTGGGTTGTTCCACTTAGGCATCTTTAGACTCC
GCGAAAAAGTCTACCAGAATCGTCTAGCCAGAAGCTCGAAGGCCGCAGCG
GAGGCCCAAGCGATCGAATTGAAGGAGAGCGACCAAGCTTGA