mRNA_Ecto-sp13_S_contig982.21470.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig982.21470.1 vs. uniprot
Match: D8LH34_ECTSI (Peptidase-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH34_ECTSI) HSP 1 Score: 363 bits (932), Expect = 7.650e-104 Identity = 179/196 (91.33%), Postives = 188/196 (95.92%), Query Frame = 3 Query: 6 MDLYHGNIRELLELEEELNTLPCSIERSAKVNLLKFLQVNAVVEYERVSIALYFDLRRDAGFHELYLVQEKNHVGHTCSQPMEAGSIEEHLVQAEEAKTCLDRLIYSIATPGDPRWEGIPAPIKSKESARRKADKLGNARYVTDFAHATFVCETPHNLVEVFALLTDGIGQEDNLLRVSNVFLRNYGRNGYRDVEV 593 MDLYHGNIRELL+LEEELNTLPCSIERSAKVNLLKFLQVNAVVEYERVS ALYFDLRRDAGFHEL LV EKNH+GHTCSQPMEAGSIE++LVQAEEAK CLDRLIYSIATPGDPRWEGIPAPIKSKESA RKADKLGNAR+VTDFA ATFVC+TPH+LVEV ALLTDGIGQEDNLLRVSN FLRNYGRNGYRDV++ Sbjct: 1 MDLYHGNIRELLQLEEELNTLPCSIERSAKVNLLKFLQVNAVVEYERVSTALYFDLRRDAGFHELSLVPEKNHLGHTCSQPMEAGSIEDYLVQAEEAKACLDRLIYSIATPGDPRWEGIPAPIKSKESASRKADKLGNARFVTDFARATFVCKTPHDLVEVIALLTDGIGQEDNLLRVSNGFLRNYGRNGYRDVKM 196
BLAST of mRNA_Ecto-sp13_S_contig982.21470.1 vs. uniprot
Match: A0A6H5KNC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC4_9PHAE) HSP 1 Score: 194 bits (494), Expect = 5.180e-47 Identity = 105/199 (52.76%), Postives = 137/199 (68.84%), Query Frame = 3 Query: 3 QMDLYHGNIRELLELEEELNTLPCSIERSAKVNLLKFLQVNAVVEYERVSIALYFDLRRDAGFHELYLVQEKNHVGHTCSQPMEAGSIEEHLVQAEEAKTCLDRLIYSIATPGDPRWEGIPAPIKSKESARRKADKLGNARYVTDFAHATFVCETPHNLVEVFALLTDGIGQED--NLLRVSNVFLRNYGRNGYRDVEV 593 +MD +I+ +L+L +L LP SIERSAK+NL+ +LQV+AV +YER+S LYFDLRRD GF EL + EK G QPME GS E++L+QAE AK CLD L+ S+A G P E I A +K+ +S RKA+ G RYVTD A T +C+TP ++ +VF LT +GQ N+LRVSN F+RNYGRNGYRDV++ Sbjct: 143 RMDPTGSDIKNILQLASDLKELPDSIERSAKMNLVTYLQVDAVRKYERISTGLYFDLRRDEGFDELLRIHEKQPEGDLV-QPMETGSFEDYLLQAEHAKLCLDGLLESVAPLGTPGREVILADVKTLKSTTRKANNWGGIRYVTDLARGTVICDTPRDVAQVFEALTLKVGQVPGGNVLRVSNGFIRNYGRNGYRDVKM 340
BLAST of mRNA_Ecto-sp13_S_contig982.21470.1 vs. uniprot
Match: A0A6H5KKK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK7_9PHAE) HSP 1 Score: 107 bits (268), Expect = 5.570e-20 Identity = 75/196 (38.27%), Postives = 108/196 (55.10%), Query Frame = 3 Query: 21 GNIRELLELEEELNTLPCSIERSAKVNLLKFLQVNAVVEYERVSIALYFDLRRDAGFHELYLVQEKNHVG---HTCSQPMEAGSIEEHLVQAEEAKTCLDRLIYSIATPGDPRWEGIPAPIKSKESARRKADKL-GNARYVTDFAHATFVCETPHNLVEVFALLTDGIGQEDNLLRVSNVFLRNYGRNGYRDVEVD 596 NI+ELLELE+E+ + S++R AKVNLLK+LQV V EY+ LYF L R L + KN QP + G ++E+L A+EA+ LD+LI + D EG KS +S RKA++ GN + D A A VC TP +L + ++ + +D +LRV N F ++ +GYRDV+V+ Sbjct: 9 SNIQELLELEKEIRSKIPSLDRDAKVNLLKYLQVQRVQEYQVEYDRLYFTLSRGGNLEGL---RRKNMAAARLKPVEQPKKLG-LQEYLADAQEAQPHLDKLIEDVVATCD-GCEGRFVGTKSPDSVMRKAERFNGNVGKIADMARAAVVCGTPEDLERAYTVIMARLNPQD-VLRVKNGFSSDWMPSGYRDVKVN 198
BLAST of mRNA_Ecto-sp13_S_contig982.21470.1 vs. uniprot
Match: D7FY64_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY64_ECTSI) HSP 1 Score: 101 bits (252), Expect = 3.150e-18 Identity = 74/212 (34.91%), Postives = 109/212 (51.42%), Query Frame = 3 Query: 24 NIRELLELEEELNTLPCSIERSAKVNLLKFLQVNAVVEYERVSIALYFDLRRDAGFHELYLVQEKNHVGHTCSQPMEAGSIEEHLVQAEE---------------AKTCLDRLIYSIATPGDPRWEGIPAPIKSKESARRKADKL--GNARYVTDFAHATFVCETPHNLVEVFALLTDGIGQEDNLLRVSNVFLRNYGRNGYRDVEVDRWLS 608 +I ELL++E EL S+ER AKVNLLKFLQV V +YER +LY++L D G L+ ++E N S + +E A+E AK LD+L+ + G G+ A +KS ES RRKA K G+ R + D A + +C+TP +L L + + + ++ RV N F + +GYRDV+V+ +S Sbjct: 6 DINELLQMEIELEGSDLSLERDAKVNLLKFLQVKTVKKYERAYDSLYYELNMDGGLECLHRIEELN----PKSSLFQPEGLEPQGCDADENLGKQLDFYREGALRAKVQLDKLVRELVN-GHQGRTGLYAEVKSLESTRRKATKSYGGDVRRLADMARVSVICDTPEDLELACKDLMESV-EPHHVKRVRNGFNSGWKPSGYRDVKVNTVVS 211
BLAST of mRNA_Ecto-sp13_S_contig982.21470.1 vs. uniprot
Match: A0A6H5JHK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK0_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 9.230e-17 Identity = 72/208 (34.62%), Postives = 107/208 (51.44%), Query Frame = 3 Query: 24 NIRELLELEEELNTLPCS-----IERSAKVNLLKFLQVNAVVEYERVSIALYFDLRRDAGFHELY---------LVQEKNHVGHTCSQPME-AGSIEEHLVQAEEAKTCLDRLIYSIATPGDPRWEGIPAPIKSKESARRKADKL--GNARYVTDFAHATFVCETPHNLVEVFALLTDGIGQEDNLLRVSNVFLRNYGRNGYRDVEVD 596 +I ELL LE EL C +R AK+NLLKFLQ+ AV++YE LY++L + G L L+Q K C++ + A +E +L AE AK LD L+ IA E A +KS+ S +RKA K G+ R V D A + +C+ P L + + + + ++LRV+N F ++ +GYRDV+V+ Sbjct: 4 DIAELLRLEAELEN-SCEDCRNPYDRDAKLNLLKFLQIRAVLQYEEAYDRLYYELNKHGGLECLREIAPARLKDLLQPKVLELQDCNEDVRFAAQLEFYLADAELAKNRLDELVADIAKHTG-ECEVHCAEVKSRASTQRKASKSYGGDVRKVADMARVSVICDNPEALKRAYLAIVESF--QGDVLRVANGFNSDWMPSGYRDVKVN 207
BLAST of mRNA_Ecto-sp13_S_contig982.21470.1 vs. uniprot
Match: A0A6H5KB97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB97_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 3.080e-16 Identity = 62/165 (37.58%), Postives = 80/165 (48.48%), Query Frame = 3 Query: 24 NIRELLELEEELNTLPCSIERSAKVNLLKFLQVNAVVEYERVSIALYFDLRRDAGFHELYLVQEKNHVGHTCSQPMEAGSIEEHLVQAEEAKTCLDRLIYSIATPGDPRWEGIPAPIKSKESARRK------ADKLGNARYVTDFAHATFVCETPHNLVEVFALL 500 NI+ LL+LE +LN LP SIER AK+NLLK VQ K G QP + S+E++ AE AK LD+L+ S+A PG P E I P+KS +S RK +K R +TD A T +C TPH+L + F LL Sbjct: 9 NIKGLLDLETKLNNLPSSIERKAKMNLLK--------------------------------VQGKEQPGGDLVQPTKMRSVEDYRKDAERAKVDLDQLVGSVAPPGTPGLEMIETPVKSLDSTMRKINGWHKVEKWRTIRDITDLARVTLICNTPHDLADGFELL 141
BLAST of mRNA_Ecto-sp13_S_contig982.21470.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 5.050e-15 Identity = 69/199 (34.67%), Postives = 105/199 (52.76%), Query Frame = 3 Query: 42 ELEEELNTLPCSIERSAKVNLLKFLQVNAVVEYERVSIALYFDLRRDAGFHELY---------LVQEKNHVGHTCSQPME-AGSIEEHLVQAEEAKTCLDRLIYSIA--TPGDPRWEGIPAPIKSKESARRKADKL--GNARYVTDFAHATFVCETPHNLVEVFALLTDGIGQEDNLLRVSNVFLRNYGRNGYRDVEVD 596 ELE T +R AK+NLLKFLQ+ AV+++ER LY++L + G L L+Q K C + + A +E +L A+ AK LD L+ IA T G + A +KS+ S +RKA K G+ R VTD A + +C+TP L + + + + ++LRV+N F ++ +GYRDV+V+ Sbjct: 1441 ELENSCETCQNPYDRDAKLNLLKFLQIKAVLQFERAYDHLYYELNKHGGLKCLREITPARPKDLLQPKVLELQDCHEDVRFAAQLEFYLADAKLAKNRLDELVVDIAKDTGG---CQVHCAEVKSRASTQRKARKSYDGDVRKVTDMARVSVICDTPEALKRAYLAIVESF--QGDVLRVANGFNSDWMPSGYRDVKVN 1634
BLAST of mRNA_Ecto-sp13_S_contig982.21470.1 vs. uniprot
Match: D7FH93_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH93_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 5.370e-15 Identity = 70/208 (33.65%), Postives = 108/208 (51.92%), Query Frame = 3 Query: 24 NIRELLELEEELNTLPCSIERS-----AKVNLLKFLQVNAVVEYERVSIALYFDLRRDAGFHELY---------LVQEKNHVGHTCSQPMEAGS-IEEHLVQAEEAKTCLDRLIYSIATPGDPRWEGIPAPIKSKESARRKADKL--GNARYVTDFAHATFVCETPHNLVEVFALLTDGIGQEDNLLRVSNVFLRNYGRNGYRDVEVD 596 +I EL+ LE EL T C E S AKVN+LK+LQV V+ ++ LY++L + G L L+Q K CS+ + ++ +L AE AK LD L+ +A ++E A +KS+ES RRKA + G+ R V D A T +C P L E ++ + + E ++LR+ N F ++ +GYRDV+++ Sbjct: 4 DINELIRLEAELKT-SCESETSPVSLDAKVNILKYLQVQTVLRFQGQYDGLYYELNKTGGLECLRGIAAVRSTELLQPKVLGLQDCSEDEQLEKQLQFYLADAELAKPNLDELVTKVAHDSS-KYEVQRAEVKSRESTRRKASREHDGDVRKVADMARVTLICANPEALKEAYSSIMEM--PEQHVLRIKNGFNSDWMPSGYRDVKLN 207
BLAST of mRNA_Ecto-sp13_S_contig982.21470.1 vs. uniprot
Match: A0A6H5KU99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU99_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 7.400e-15 Identity = 79/219 (36.07%), Postives = 106/219 (48.40%), Query Frame = 3 Query: 27 IRELLELEEELN---------TLPC-------SIERSAKVNLLKFLQVNAVVEYERVSIALYFDLRRDAGFHELY----------LVQEKNHVGHTCSQPMEAGS-IEEHLVQAEEAKTCLDRLIYSIATPGDPRWEGIPAPIKSKESARRKADKL--GNARYVTDFAHATFVCETPHNLVEVFALLTDGIGQEDNLLRVSNVFLRNYGRNGYRDVEVD 596 I ELL LE+EL C S+ER AKVNLLKFLQV V +Y+R LY++L + G L L+Q +C E S ++ + AE AK LD L+ + G EG+ IK+ ES +RKA + GN R V D A A +C TP +L + L I Q ++ RVSN F ++ NGYRDV+V+ Sbjct: 7 INELLRLEKELQGNAPSVWDKLFECVSIREKPSLERDAKVNLLKFLQVKTVDKYKRAYDNLYYELNKQGGLECLRRIEPAPAKSALLQPIVLEEQSCDADEELSSQLQFYRKGAECAKEQLDGLVQEVIN-GREGCEGVYPKIKTLESTKRKAVRFYGGNVRRVADMARAAVICNTPEDLETAYIGLMARI-QPHDVKRVSNGFDADWMPNGYRDVKVN 223
BLAST of mRNA_Ecto-sp13_S_contig982.21470.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 9.220e-15 Identity = 68/207 (32.85%), Postives = 103/207 (49.76%), Query Frame = 3 Query: 24 NIRELLELEEELNTLPC----SIERSAKVNLLKFLQVNAVVEYERVSIALYFDLRRDAGFHELYLVQEKNHVG---------HTCSQPMEAGS-IEEHLVQAEEAKTCLDRLIYSIATPGDPRWEGIPAPIKSKESARRKADKL--GNARYVTDFAHATFVCETPHNLVEVFALLTDGIGQEDNLLRVSNVFLRNYGRNGYRDVEVD 596 +I ELL LE EL + ++ AKVNLLK+LQ+ V++++ +Y++L + G L + G C Q + +E +L AE AK CLD L+ ++A ++E IKS+ES RRKA G+ R V D A T +C TP L E + I + +LRV N F ++ +GYRDV+++ Sbjct: 5 DISELLRLEAELKSSRARETWTVSLDAKVNLLKYLQIQTVLQFQAAYDDMYYELHQTGGLDCLRSIAPVRSTGVFQPKVLDLQDCGQDDQLEKQLEFYLADAELAKACLDELVMNVAHDSS-KYEVQCVEIKSRESTRRKASTGYDGDVRKVADMARVTVICATPEALKEAYL----AIMELPEVLRVKNGFNSDWMPSGYRDVKLN 206 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig982.21470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig982.21470.1 >prot_Ecto-sp13_S_contig982.21470.1 ID=prot_Ecto-sp13_S_contig982.21470.1|Name=mRNA_Ecto-sp13_S_contig982.21470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=223bp MDLYHGNIRELLELEEELNTLPCSIERSAKVNLLKFLQVNAVVEYERVSIback to top mRNA from alignment at Ecto-sp13_S_contig982:6738..16433+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig982.21470.1 ID=mRNA_Ecto-sp13_S_contig982.21470.1|Name=mRNA_Ecto-sp13_S_contig982.21470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=9696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig982:6738..16433+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig982:6738..16433+ >mRNA_Ecto-sp13_S_contig982.21470.1 ID=mRNA_Ecto-sp13_S_contig982.21470.1|Name=mRNA_Ecto-sp13_S_contig982.21470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=669bp|location=Sequence derived from alignment at Ecto-sp13_S_contig982:6738..16433+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |