mRNA_Ecto-sp13_S_contig9818.21469.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: A0A6H5L7Y5_9PHAE (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y5_9PHAE) HSP 1 Score: 819 bits (2116), Expect = 2.270e-293 Identity = 465/551 (84.39%), Postives = 482/551 (87.48%), Query Frame = 1 Query: 1 GSDWNIIKRVFVQADGEFWTAGLPPSASAANXXXXXXXXXXXXXXXPTSGASDGSGSNAPPARGKTHAGGADRVVSLEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDLKFKPKAAELGEPIAVLDLHPGDMMYIPRGWPHEAAVNGTAARPSGGRGASPSSSAARGPSLHLTFGVETALSGTYESLLHHALEVAAVEHPLLLGLSPRGGEESDKQSADDSDEDNQGRKGGDAEVPWLQLLHLWVHDVASRDARLRKAVPLAPLFSASSEGRPTPPTATKDNSDAGSIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAVLQEFQVSLEACAGSAAADDAHGVGGGASSTLALLDSLLENEQLYRVREMFFVGDGELRGRGGXXXXXXXXXXXXXXXXEDEDAADPVLSPRMSEETEWSRATLEAFDRTRFSSSSLREKMEGFRSVASPEGALRRMVVASSRRARERDEVTERDLARCGQGPPSRGGV 1653 GSDWNIIKRVFVQADGEFWTAGLPPS A + TSGA+DG GSN PPA GKTHAGGADRVV LEEAR AFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPD+KFKPKAA LGEPIAVLDLHPGDMMYIPRGWPHEAAVNGTAARP+GGRGASPS SAARGPSLHLTFGVETALSGTYESLLHHALEVAAVEHPLL GLSPR G SDK+SA++SDEDNQGR GG+AEVPWLQLLHLWVHDVASRDARLRKAVPLAPLFSASSEGRP PPTA K + DAGSIDXXXXXXXXXXX P AVLQEF++SLEACAGSAAADDA GVGG ASSTLALLDSLLENEQL+RVREMFFVGDGELRGRGG XXXXXXXXXXXX EDAAD VLS RMSE+TEWSRATLEAFDRTRF SSSLRE+MEGFR+VASP+GALRRMVVASSRRARERD+VTERDLARCGQGPPSRGGV Sbjct: 40 GSDWNIIKRVFVQADGEFWTAGLPPSTLATDKQERRSSSSSSR----TSGATDGWGSNTPPAPGKTHAGGADRVVFLEEARKAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDMKFKPKAAALGEPIAVLDLHPGDMMYIPRGWPHEAAVNGTAARPAGGRGASPSRSAARGPSLHLTFGVETALSGTYESLLHHALEVAAVEHPLLFGLSPREGGRSDKRSANESDEDNQGRMGGNAEVPWLQLLHLWVHDVASRDARLRKAVPLAPLFSASSEGRPAPPTAAKGSPDAGSIDXXXXXXXXXXXEGVCTASAQRQEHQTAAV----PPAVLQEFKISLEACAGSAAADDAPGVGGAASSTLALLDSLLENEQLHRVREMFFVGDGELRGRGGDETSXXXXXXXXXXXXXXEDAADAVLSSRMSEDTEWSRATLEAFDRTRFLSSSLREEMEGFRNVASPQGALRRMVVASSRRARERDKVTERDLARCGQGPPSRGGV 582
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: D7G4T0_ECTSI (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T0_ECTSI) HSP 1 Score: 782 bits (2019), Expect = 7.420e-278 Identity = 446/555 (80.36%), Postives = 457/555 (82.34%), Query Frame = 1 Query: 1 GSDWNIIKRVFVQADGEFWTAGLPPSASAANXXXXXXXXXXXXXXXPTSGASDGSGSNAPPARGKTHAGGADRVVSLEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDLKFKPKAAELGEPIAVLDLHPGDMMYIPRGWPHEAAVNGTAARPSGGRGASPSSSAARGPSLHLTFGVETALSGTYESLLHHALEVAAVEHPLLLGLSPRGGEESDKQSADDSDEDNQGRKGGDAEVPWLQLLHLWVHDVASRDARLRKAVPLAPLFSASSEGRPTPPTATKDNSDAGSIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAVLQEFQVSLEACAGSAAADDAHGVGGGASSTLALLDSLLENEQLYRVREMFFVGDGELRGRGGXXXXXXXXXXXXXXXX--EDEDAADPVLSPRMSEETEWSRATLEAFDRTRFSSSSLREKMEGFRSVASPEGALRRMVVASSRRARERDEVTERDLARCGQGPPSRGGVEV 1659 GSDWNIIKRVFVQAD DG GSN PPA GKTHAGGADRVVSLEEAR AFHRGGFSVVINRLQRRWRGVLRASRALE VLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILY EMVTMPRPDLKFKPKAAELGEPIAVLDL+PGDMMYIPRGWPHEAAVNGTAARP GGRGASPSSS ARGPSLH+TFGVETALSGTYESLLHHALEVAAVEHPLL GL P GGEESDK+SA+DSDEDNQGR GGDAE+PWLQLLHLWVHDVASRDARLRKAVPLAPLF ASSEGRP P TA KDNSDAGSID P AVLQEF++SLEACAGSAAADDA GVGG ASSTLALLDSLL+ EQLYRVREMFFVGDGELRG GGXXXXXXXXXXXXXXXX EDEDA + VLS RMSEETEWSRATLEAFDRTRFSSSSLREKMEGFR VASPEGALRRMVVASSRRARERDE+TERDLARCGQGPP+RGGV V Sbjct: 119 GSDWNIIKRVFVQAD-------------------------------------DGPGSNVPPAPGKTHAGGADRVVSLEEARKAFHRGGFSVVINRLQRRWRGVLRASRALEHVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYHEMVTMPRPDLKFKPKAAELGEPIAVLDLYPGDMMYIPRGWPHEAAVNGTAARPGGGRGASPSSSTARGPSLHVTFGVETALSGTYESLLHHALEVAAVEHPLLFGLLPGGGEESDKRSANDSDEDNQGRMGGDAEIPWLQLLHLWVHDVASRDARLRKAVPLAPLFFASSEGRPAPATAAKDNSDAGSIDDDNINVAGGRREGVCTASAQRQEHQTVA-----PSAVLQEFKISLEACAGSAAADDAPGVGGAASSTLALLDSLLDTEQLYRVREMFFVGDGELRGHGGXXXXXXXXXXXXXXXXXXEDEDAFEAVLSSRMSEETEWSRATLEAFDRTRFSSSSLREKMEGFRKVASPEGALRRMVVASSRRARERDEITERDLARCGQGPPNRGGVAV 631
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: W7TVJ2_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVJ2_9STRA) HSP 1 Score: 142 bits (357), Expect = 3.000e-32 Identity = 81/180 (45.00%), Postives = 103/180 (57.22%), Query Frame = 1 Query: 214 DRVVSLEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDLKFKPKAAELGEPIAVLDLHPGDMMYIPRGWPHEAAVNGTAARPSGGRGASPSSSAARGPSLHLTFGVETALSGTYESLLHHALEV 753 D E A AF RG +S+VIN ++ + G R + A E LG + N Y TPP SQ FEAHFDWMD ++Q+ GSK W LYD +V PRPD++FKP ++GEP L PGD++Y+P G HEA GG G S SLHLT G+ET + G++ESLL L V Sbjct: 142 DDSTDAEVAHAAFSRG-YSLVINNIEDKLYGTSRLALAFEGELGYRTSINCYFTPPGSQAFEAHFDWMDAFILQVEGSKRWRLYDALVEQPRPDMQFKPSLHDIGEPYIDFVLEPGDLLYLPSGTIHEALNEND-----GGLGNS---------SLHLTVGIETTVLGSWESLLLEVLTV 306
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: A0A7S0VDM9_9CRYP (Bifunctional lysine-specific demethylase and histidyl-hydroxylase (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VDM9_9CRYP) HSP 1 Score: 125 bits (315), Expect = 9.110e-29 Identity = 77/201 (38.31%), Postives = 104/201 (51.74%), Query Frame = 1 Query: 1 GSDWNIIKRVFVQADGEFWTAGLPPSASAANXXXXXXXXXXXXXXXPTSGASDGSGSNAPPARGKTHAGGADRVVSLEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDLKFKPKAAEL-GEPIAVLDLHPGDMMYIPRGWPHEA 600 GSD+ ++KR DGE+W+ G P G +H A R + H GF++V+N L R RGV R +R+LE G V ANLY+TPP SQGFE H+D M+ IV+Q++GSK W LYD +V +PRP+ +FKP A++ G+ + L GD +YIPRGW HEA Sbjct: 106 GSDYRLVKRT-KGPDGEWWSGGAP---------------------------------------GDSHDSAAIREL--------VHEKGFTLVLNHLDMRVRGVARLARSLEKQTGLAVQANLYLTPPGSQGFEVHWDPMETIVLQVSGSKLWHLYDPLVPLPRPEQRFKPTGAQVEGQAKRSVMLEAGDTLYIPRGWLHEA 258
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: A0A7R9VM90_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VM90_9STRA) HSP 1 Score: 121 bits (303), Expect = 5.570e-25 Identity = 95/273 (34.80%), Postives = 132/273 (48.35%), Query Frame = 1 Query: 214 DRVVSLEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLG-QPVNANLYMTPP-------------------QSQGFEAHFDWMDGIVVQLTGSKTWILYDE-MVTMPRPDLKFKPKAAELGEPIAVLD------LHPGDMMYIPRGWPHEAAVNGTAA---------RPSGGRGASPSSSAARGPSLHLTFGVETALSGTYESLLHHALEVAAVEHPLLLGLSPRGGEESDKQSADDSDEDNQGRKGGDAEVPWLQLLHLWVHDVASR 924 +R ++ + A F GGFS+V+N +QRRW + SR +++ +G V+ NLY TP Q GFE+H+DWMD IVVQ++GSK W + E +V + DLK KP E+ E I L PGD MYIPRG+ H A+ G A + G S+ + PSLHLTFG+E TYE+LL HA+ + G E+ KQ A S + G + ++ W +L L + DVA R Sbjct: 259 ERSITSDHAAQLFDLGGFSLVVNAMQRRWGNIGAISRVMQEEVGCNYVSCNLYATPSVVEKRPPRPGEEPRPKMVAQRSGFESHWDWMDVIVVQISGSKLWSVATEPLVYLSTQDLKRKPTIEEMKEYIGDKGRYREFLLRPGDAMYIPRGFLHNASTVGPDAGLVNALFNGSEADNDGDDNDSTLWQEPSLHLTFGIEHTCMTTYEALLQHAMHLF-------------GNTEAGKQVAVSSK-----KCGTEQDILWHHMLTLAISDVARR 513
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: A0A0H4WS94_9DELT (Cupin 4 family protein n=1 Tax=Myxococcus hansupus TaxID=1297742 RepID=A0A0H4WS94_9DELT) HSP 1 Score: 117 bits (292), Expect = 1.020e-24 Identity = 76/189 (40.21%), Postives = 104/189 (55.03%), Query Frame = 1 Query: 229 LEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDLKFKPKAAELGEPIAVLDLHPGDMMYIPRGWPHEAAVNGTAARPSGGRGASPSSSAARGPSLHLTFGVETALSGTYESLLHHALEVAAVEHPLLLGLSPR 795 LE+ + A+ R GF++VINRL R W V R A+E+ L PV ANLYMTPP +QGF+AHFD MD V+Q+ G+K W + +P PD ++ L + +L G+++YIPRG+ HEA AAR S+HLT G++ T+E LL A+ VA + L GL PR Sbjct: 80 LEQVQAAW-REGFTLVINRLGRFWEPVGRFCAAVEEELHHPVGANLYMTPPGAQGFKAHFDVMDAFVLQVEGAKVWQVRGPQRVLPLPDEHTTELSSPLPPVLMEHELKSGEVLYIPRGFIHEAR-------------------AAREHSVHLTLGLQAI---TWEELLRAAIAVARRDERLRRGLPPR 245
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: A0A7S1Y1A8_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y1A8_9STRA) HSP 1 Score: 115 bits (289), Expect = 4.650e-24 Identity = 71/168 (42.26%), Postives = 96/168 (57.14%), Query Frame = 1 Query: 214 DRVVSLEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQP-VNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDE-MVTMPRPDLKFKPKAAELGEP--IAVLDLHPGDMMYIPRGWPHEAAVNGTAARPSGGRGASPSSSAARGPSLHLTFGVET 705 +RV +LE+A +A H GF++V+++LQ W + +R LE Q V+ NLYMTPP GFE+H+DWMD IV+QL G KTW + E V + +LK+KP AEL E L+PGD++YIPRG H A+ G SLHLTFG+E+ Sbjct: 156 ERVSTLEDAVMAHH-AGFTLVVDKLQNHWPSISEFARELEVETQQTHVSCNLYMTPPNRSGFESHWDWMDVIVLQLAGQKTWSVASEPTVYLSNEELKYKPSLAELNETSWYDTFVLNPGDVLYIPRGHLHNASTVGFLQE----------------TSLHLTFGIES 306
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: A0A7S1U4K8_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4K8_9STRA) HSP 1 Score: 110 bits (275), Expect = 8.610e-24 Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 1 Query: 262 GFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDLKFKPKAAELGEPIAVLDLHP 558 GFSVV+N LQ R V RA+ LE LG VN NLY+TPP +Q FEAH DWMDG +VQLTG K W +YD +V PR DL++KP+ ++LG A ++HP Sbjct: 131 GFSVVLNALQLRDATVQRAALGLEAALGVRVNVNLYLTPPGAQAFEAHQDWMDGFIVQLTGRKAWRVYDRLVDRPRADLRYKPRQSQLG---AAEEVHP 226
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: A0A0G4IJ20_PLABS (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IJ20_PLABS) HSP 1 Score: 111 bits (277), Expect = 8.790e-23 Identity = 71/187 (37.97%), Postives = 101/187 (54.01%), Query Frame = 1 Query: 247 AFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQ-PVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEM--VTMPRPDLKFKPKAAELGEPIAV-LDLHPGDMMYIPRGWPHEAAVNGTAARPSGGRGASPSSSAARGPSLHLTFGVETALSGTYESLLHHALEVA--AVEHPLLLGLS 789 AF GGF++++NR RRWR + + + P+NANLY+TP +QGFEAH DWM+ IV+QL G K W LY + V +P P++ KP ++ L + A+ L L PGD++YIP G HEA+ T SLH+T G+E T+ L+ A+ A+ P LL L+ Sbjct: 38 AFSLGGFTLIVNRAHRRWRPIASICELVGRTIASFPINANLYLTPKLAQGFEAHQDWMEVIVIQLEGMKHWRLYPDFPSVRLPFPEMIVKPSSSSLTKERALDLTLSPGDVLYIPAGVVHEASTGTTDTI-----------------SLHVTIGIEIHPVDTWLGLMLSAVRFMSNAMSRPTLLCLA 207
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: Q091R3_STIAD (Cupin 4 family protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) TaxID=378806 RepID=Q091R3_STIAD) HSP 1 Score: 109 bits (273), Expect = 3.090e-22 Identity = 69/189 (36.51%), Postives = 99/189 (52.38%), Query Frame = 1 Query: 229 LEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDLKFKPKAAELGEPIAVLDLHPGDMMYIPRGWPHEAAVNGTAARPSGGRGASPSSSAARGPSLHLTFGVETALSGTYESLLHHALEVAAVEHPLLLGLSPR 795 LE+ + A+ R G+++VIN++ + W V R A+E+ L PV NLYMTPP +QGF+AHFD MD V+Q+ GSK W + VT+P PD + L + +L GD++YIPRG+ HEA A+ S+HLT G++ T+ L A+ A + GL PR Sbjct: 80 LEQVQAAW-REGYTIVINKVGQFWEPVGRFCAAVEEELHHPVGVNLYMTPPGAQGFKAHFDIMDAFVLQVEGSKVWQVRGPQVTLPLPDEHTATSSESLPPVLLEQELKRGDVLYIPRGFVHEART-------------------AQTHSVHLTLGLQAV---TWSDLFVAAIAAARRDERFRKGLPPR 245 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9818.21469.1 >prot_Ecto-sp13_S_contig9818.21469.1 ID=prot_Ecto-sp13_S_contig9818.21469.1|Name=mRNA_Ecto-sp13_S_contig9818.21469.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=554bp GSDWNIIKRVFVQADGEFWTAGLPPSASAANKQERRSSSPSSSSSSPTSGback to top mRNA from alignment at Ecto-sp13_S_contig9818:589..6015- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9818.21469.1 ID=mRNA_Ecto-sp13_S_contig9818.21469.1|Name=mRNA_Ecto-sp13_S_contig9818.21469.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5427bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9818:589..6015- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9818:589..6015- >mRNA_Ecto-sp13_S_contig9818.21469.1 ID=mRNA_Ecto-sp13_S_contig9818.21469.1|Name=mRNA_Ecto-sp13_S_contig9818.21469.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1662bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9818:589..6015- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |